Wall clock time and date at job start Tue Mar 31 2020 02:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46648 * 2 1 4 4 N 1.46905 * 109.46977 * 119.99620 * 2 1 3 5 5 C 1.46901 * 111.00050 * 275.00039 * 4 2 1 6 6 C 1.52998 * 109.47095 * 180.02562 * 5 4 2 7 7 C 1.50692 * 109.47254 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00013 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00455 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99579 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00206 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47139 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47061 * 120.00503 * 11 9 7 14 14 H 1.48503 * 109.46712 * 239.99798 * 11 9 7 15 15 C 1.50696 * 109.47146 * 239.99643 * 2 1 3 16 16 N 1.28666 * 124.93156 * 285.31260 * 15 2 1 17 17 C 1.32517 * 117.88053 * 180.22159 * 16 15 2 18 18 C 1.34618 * 113.16003 * 359.51020 * 17 16 15 19 19 S 1.70914 * 124.92971 * 104.99805 * 15 2 1 20 20 C 1.50994 * 125.22780 * 180.21169 * 18 17 16 21 21 C 1.53276 * 108.58945 * 343.97587 * 20 18 17 22 22 C 1.53153 * 108.99823 * 49.24503 * 21 20 18 23 23 C 1.52136 * 124.20335 * 179.78613 * 17 16 15 24 24 H 1.09001 * 109.46917 * 299.99724 * 1 2 3 25 25 H 1.08998 * 109.46889 * 60.00122 * 1 2 3 26 26 H 1.09001 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.00896 * 110.99379 * 151.04557 * 4 2 1 28 28 H 1.09003 * 109.46628 * 300.00307 * 5 4 2 29 29 H 1.08997 * 109.47176 * 59.99892 * 5 4 2 30 30 H 1.09003 * 109.47321 * 300.00384 * 6 5 4 31 31 H 1.09002 * 109.46838 * 59.99864 * 6 5 4 32 32 H 0.96999 * 119.99766 * 179.97438 * 10 9 7 33 33 H 1.08995 * 109.61749 * 224.24441 * 20 18 17 34 34 H 1.09005 * 109.76205 * 103.79335 * 20 18 17 35 35 H 1.08995 * 109.54920 * 289.39451 * 21 20 18 36 36 H 1.08998 * 109.62814 * 169.14601 * 21 20 18 37 37 H 1.08997 * 109.47727 * 169.62653 * 22 21 20 38 38 H 1.09003 * 109.47354 * 49.60331 * 22 21 20 39 39 H 1.08997 * 109.59049 * 281.91830 * 23 17 16 40 40 H 1.09006 * 109.59336 * 42.21768 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5962 -0.5327 3.5742 7 6 2.6612 0.4062 4.7511 8 1 2.3653 1.4385 4.6354 9 6 3.0975 -0.0527 5.9760 10 7 3.4574 -1.3097 6.1170 11 14 3.1774 1.1111 7.4350 12 1 2.7222 2.4612 7.0167 13 1 2.2984 0.6057 8.5199 14 1 4.5759 1.1914 7.9280 15 6 2.0324 -0.7105 -1.2304 16 7 2.0153 -1.9853 -1.4036 17 6 2.4984 -2.4626 -2.5415 18 6 2.9389 -1.5011 -3.3744 19 16 2.7005 0.0607 -2.6015 20 6 3.5361 -1.7388 -4.7407 21 6 3.9250 -3.2171 -4.8535 22 6 2.7411 -4.0796 -4.4063 23 6 2.5528 -3.9416 -2.8939 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9173 -1.1204 1.0288 28 1 2.7589 1.0463 2.1181 29 1 1.0871 0.6165 2.5525 30 1 1.9202 -1.3566 3.8031 31 1 3.5917 -0.9261 3.3683 32 1 3.7647 -1.6325 6.9785 33 1 4.4223 -1.1167 -4.8660 34 1 2.8046 -1.4930 -5.5105 35 1 4.7845 -3.4180 -4.2141 36 1 4.1770 -3.4515 -5.8877 37 1 2.9372 -5.1227 -4.6544 38 1 1.8368 -3.7483 -4.9169 39 1 3.3904 -4.4098 -2.3770 40 1 1.6224 -4.4235 -2.5936 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273298630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:57 Heat of formation + Delta-G solvation = -4.590262 kcal Electronic energy + Delta-G solvation = -19109.689110 eV Core-core repulsion = 16241.887201 eV Total energy + Delta-G solvation = -2867.801909 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21915 -38.54620 -36.94518 -35.24876 -32.97953 -31.82955 -30.13747 -29.59314 -26.61597 -25.67784 -24.51087 -23.13927 -22.46892 -21.29358 -19.36685 -18.98397 -18.43992 -17.05727 -16.50491 -16.31599 -15.94230 -15.72108 -15.52029 -14.89076 -14.73891 -14.53894 -14.19480 -14.10330 -13.88434 -13.54201 -13.04042 -12.99075 -12.91296 -12.87953 -12.63896 -12.48003 -12.37677 -11.88510 -11.78963 -11.72388 -11.44365 -11.39972 -11.27781 -10.58404 -10.46821 -10.17271 -9.53129 -9.36146 -8.20753 -6.32826 -0.31154 0.32512 0.73351 1.40217 1.41083 1.54525 1.77250 2.40237 2.93089 3.12689 3.28156 3.70029 3.78932 3.96935 4.00760 4.10111 4.22599 4.24258 4.49203 4.54035 4.56420 4.57470 4.62580 4.77408 4.84356 4.87975 4.97648 5.03310 5.06142 5.13712 5.20901 5.28877 5.39173 5.42191 5.43605 5.63801 5.76520 6.08738 6.20643 6.38709 6.84632 6.86022 7.36646 8.91893 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029701 B = 0.003202 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.500426 B = 8741.642572 C = 9107.490993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.161 3.839 3 H 0.069 0.931 4 N -0.679 5.679 5 C 0.084 3.916 6 C 0.033 3.967 7 C -0.542 4.542 8 H 0.064 0.936 9 C -0.002 4.002 10 N -0.933 5.933 11 Si 0.970 3.030 12 H -0.259 1.259 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.031 3.969 16 N -0.480 5.480 17 C 0.038 3.962 18 C -0.222 4.222 19 S 0.135 5.865 20 C -0.041 4.041 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.041 4.041 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.335 0.665 28 H 0.023 0.977 29 H 0.068 0.932 30 H -0.008 1.008 31 H -0.014 1.014 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -0.047 -26.628 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.087 0.913 4 N -0.311 5.311 5 C -0.045 4.045 6 C -0.004 4.004 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.200 4.200 10 N -0.573 5.573 11 Si 0.794 3.206 12 H -0.183 1.183 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.248 4.248 16 N -0.194 5.194 17 C -0.093 4.093 18 C -0.344 4.344 19 S 0.393 5.607 20 C -0.081 4.081 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.081 4.081 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.152 0.848 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.011 0.989 31 H 0.005 0.995 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.481 0.367 -26.175 26.219 hybrid contribution 0.865 -0.133 1.038 1.358 sum -0.615 0.233 -25.137 25.146 Atomic orbital electron populations 1.21719 0.91930 1.02371 1.02422 1.20203 0.97258 0.94057 0.83625 0.91303 1.60580 1.33566 1.33366 1.03587 1.21909 0.99770 0.93049 0.89742 1.18895 0.94119 0.95129 0.92280 1.21632 1.43930 0.97015 0.95484 0.91761 1.26032 0.94756 0.96885 1.02305 1.70136 1.45259 1.16546 1.25403 0.85325 0.77843 0.79073 0.78338 1.18286 1.20373 1.20376 1.26830 1.04106 0.92414 1.01429 1.65760 1.17894 1.13182 1.22586 1.21419 1.00243 0.99087 0.88519 1.26528 1.09608 0.93905 1.04310 1.83584 1.56895 1.09879 1.10364 1.20362 1.00578 0.98749 0.88376 1.21638 0.97928 0.92415 1.03229 1.21568 0.99212 1.01680 0.92568 1.20470 1.02881 0.86715 0.98048 0.91542 0.90561 0.92996 0.84763 0.95836 0.91398 0.98908 0.99541 0.92765 0.89268 0.88539 0.91970 0.88197 0.88882 0.91298 0.90336 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.40 71.98 0.68 -2.91 16 2 C 0.16 5.08 3.11 44.17 0.14 5.22 16 3 H 0.07 1.99 7.80 -2.39 -0.02 1.97 16 4 N -0.68 -26.74 6.28 -495.44 -3.11 -29.85 16 5 C 0.08 3.66 5.42 86.30 0.47 4.13 16 6 C 0.03 1.85 5.23 29.84 0.16 2.01 16 7 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 10 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 11 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 12 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.03 0.93 5.89 88.57 0.52 1.45 16 16 N -0.48 -15.67 10.47 -177.08 -1.85 -17.52 16 17 C 0.04 1.01 6.78 42.09 0.29 1.30 16 18 C -0.22 -4.87 6.39 24.95 0.16 -4.71 16 19 S 0.13 3.10 23.17 -56.49 -1.31 1.80 16 20 C -0.04 -0.56 6.28 30.03 0.19 -0.37 16 21 C -0.11 -1.27 5.95 30.74 0.18 -1.09 16 22 C -0.11 -1.45 5.87 30.66 0.18 -1.27 16 23 C -0.04 -0.85 6.29 30.32 0.19 -0.66 16 24 H 0.07 1.90 7.45 -2.39 -0.02 1.88 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.33 13.76 8.35 -89.70 -0.75 13.01 16 28 H 0.02 0.98 8.06 -2.39 -0.02 0.97 16 29 H 0.07 2.87 7.44 -2.39 -0.02 2.85 16 30 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -69.94 338.01 0.15 -69.78 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.27 Total: 14.93 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.84 Total: -27.92 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -4.68 Total: -105.57 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.31 Total: 1.80 kcal Total: -69.94 0.15 -69.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273298630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.191 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds