Wall clock time and date at job start Tue Mar 31 2020 02:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47090 * 2 1 4 4 C 1.50701 * 109.47004 * 240.00499 * 2 1 3 5 5 C 1.38424 * 122.53859 * 199.66301 * 4 2 1 6 6 C 1.33389 * 114.92194 * 179.75668 * 5 4 2 7 7 S 1.75890 * 109.58951 * 0.47505 * 6 5 4 8 8 C 1.33384 * 122.54158 * 19.94190 * 4 2 1 9 9 N 1.46899 * 109.47587 * 120.00196 * 2 1 3 10 10 C 1.46962 * 110.99816 * 54.78212 * 9 2 1 11 11 C 1.53047 * 109.36436 * 176.81517 * 10 9 2 12 12 N 1.46962 * 109.36835 * 58.40022 * 11 10 9 13 13 C 1.46890 * 111.00299 * 176.81290 * 12 11 10 14 14 C 1.50703 * 109.47169 * 59.20965 * 13 12 11 15 15 H 1.07996 * 120.00256 * 355.49801 * 14 13 12 16 16 C 1.37878 * 119.99837 * 175.48806 * 14 13 12 17 17 N 1.31510 * 120.00068 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99700 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47483 * 60.00330 * 18 16 14 20 20 H 1.48507 * 109.46993 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47226 * 299.99671 * 18 16 14 22 22 C 1.46962 * 110.87930 * 300.68111 * 12 11 10 23 23 C 1.46961 * 110.99866 * 290.98598 * 9 2 1 24 24 H 1.09002 * 109.47090 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46738 * 299.99590 * 1 2 3 26 26 H 1.08994 * 109.46955 * 59.99508 * 1 2 3 27 27 H 1.08004 * 122.54145 * 359.97438 * 5 4 2 28 28 H 1.07999 * 125.20399 * 180.20161 * 6 5 4 29 29 H 1.07999 * 125.20432 * 0.02562 * 8 4 2 30 30 H 1.08998 * 109.48632 * 296.77863 * 10 9 2 31 31 H 1.09000 * 109.48465 * 56.84480 * 10 9 2 32 32 H 1.09004 * 109.48955 * 298.43823 * 11 10 9 33 33 H 1.08992 * 109.50929 * 178.37960 * 11 10 9 34 34 H 1.09005 * 109.47385 * 179.21001 * 13 12 11 35 35 H 1.09004 * 109.47441 * 299.21377 * 13 12 11 36 36 H 0.97005 * 120.00122 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.48632 * 299.35306 * 22 12 11 38 38 H 1.08993 * 109.49149 * 179.28192 * 22 12 11 39 39 H 1.09001 * 109.48851 * 303.15366 * 23 9 2 40 40 H 1.08992 * 109.48934 * 63.19630 * 23 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 3.3165 -1.2182 -1.3250 6 6 3.5986 -1.8221 -2.4804 7 16 2.1953 -1.7552 -3.5387 8 6 1.2749 -0.8925 -2.3133 9 7 2.0198 -0.6925 1.1994 10 6 1.4494 -2.0434 1.2973 11 6 2.0438 -2.7583 2.5130 12 7 1.7562 -1.9792 3.7254 13 6 2.2459 -2.6716 4.9247 14 6 3.7334 -2.8847 4.8097 15 1 4.2503 -2.6061 3.9033 16 6 4.4344 -3.4350 5.8617 17 7 3.8049 -3.7745 6.9653 18 14 6.2783 -3.6984 5.7193 19 1 6.9481 -2.3939 5.4853 20 1 6.7909 -4.3001 6.9765 21 1 6.5616 -4.6112 4.5829 22 6 2.3266 -0.6283 3.6275 23 6 1.7321 0.0867 2.4118 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 4.0346 -1.1351 -0.5225 28 1 4.5454 -2.2780 -2.7297 29 1 0.2528 -0.5607 -2.4211 30 1 0.3674 -1.9740 1.4094 31 1 1.6865 -2.6045 0.3934 32 1 3.1227 -2.8518 2.3883 33 1 1.6010 -3.7500 2.6045 34 1 2.0326 -2.0668 5.8061 35 1 1.7469 -3.6363 5.0166 36 1 4.2982 -4.1613 7.7056 37 1 3.4086 -0.6977 3.5153 38 1 2.0895 -0.0670 4.5312 39 1 2.1753 1.0783 2.3204 40 1 0.6534 0.1805 2.5363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274224122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:49 Heat of formation + Delta-G solvation = 49.350682 kcal Electronic energy + Delta-G solvation = -20284.087707 eV Core-core repulsion = 17418.624853 eV Total energy + Delta-G solvation = -2865.462854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71057 -37.64586 -35.17828 -32.57876 -31.10682 -30.29004 -28.45979 -27.15569 -25.51719 -24.07855 -22.98263 -21.91373 -20.93769 -18.98514 -18.27534 -17.69868 -16.28620 -15.77585 -15.44037 -14.86636 -14.40840 -14.25601 -13.99496 -13.47886 -13.43159 -13.13635 -12.95964 -12.63517 -12.25463 -12.08326 -11.80181 -11.77417 -11.48031 -11.36780 -11.04783 -10.85805 -10.76813 -10.57044 -10.39259 -10.23433 -10.01112 -9.81101 -9.49038 -8.78203 -8.40558 -8.34615 -8.00929 -7.12927 -5.99958 -4.08817 1.02595 1.67832 1.98809 2.77488 3.30702 3.35391 3.38252 4.17690 4.43070 4.79279 4.95758 5.08736 5.16130 5.27013 5.30387 5.37855 5.49881 5.57540 5.70013 5.71238 5.76843 5.85941 5.98119 6.05049 6.14204 6.14790 6.24644 6.37079 6.42351 6.54866 6.66820 6.82038 6.91281 7.25195 7.37006 7.44656 7.55045 7.92884 8.09289 8.30793 8.34429 9.01828 9.57949 11.05063 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022323 B = 0.004472 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.000740 B = 6259.299734 C = 7049.316955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 H 0.090 0.910 4 C -0.081 4.081 5 C -0.104 4.104 6 C -0.217 4.217 7 S 0.066 5.934 8 C -0.215 4.215 9 N -0.525 5.525 10 C 0.059 3.941 11 C 0.065 3.935 12 N -0.543 5.543 13 C 0.187 3.813 14 C -0.547 4.547 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.065 3.935 23 C 0.058 3.942 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.149 0.851 28 H 0.161 0.839 29 H 0.162 0.838 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 7.206 -18.137 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.026 3.974 3 H 0.108 0.892 4 C -0.094 4.094 5 C -0.135 4.135 6 C -0.352 4.352 7 S 0.329 5.671 8 C -0.351 4.351 9 N -0.249 5.249 10 C -0.069 4.069 11 C -0.064 4.064 12 N -0.267 5.267 13 C 0.061 3.939 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.064 4.064 23 C -0.070 4.070 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.166 0.834 28 H 0.179 0.821 29 H 0.179 0.821 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.306 6.593 -19.413 21.178 hybrid contribution 1.427 0.200 1.443 2.039 sum -3.879 6.793 -17.970 19.599 Atomic orbital electron populations 1.22493 0.97091 1.02731 1.02031 1.20286 0.92433 0.97015 0.87654 0.89242 1.18915 0.93933 1.01055 0.95538 1.20163 0.97029 0.98585 0.97680 1.25579 1.02330 1.09063 0.98199 1.84148 1.06227 1.56958 1.19794 1.25439 1.03887 1.08397 0.97349 1.62318 1.58334 1.02913 1.01359 1.22235 0.96993 0.89090 0.98569 1.21926 0.99587 0.95991 0.88930 1.62684 1.57929 1.02297 1.03833 1.19721 0.93202 0.93967 0.86963 1.21739 0.94429 1.41731 1.00739 0.92339 1.24957 0.98212 0.95343 0.95244 1.69936 1.35973 1.42487 1.04740 0.86714 0.85860 0.78485 0.77307 1.20270 1.21268 1.20288 1.21905 0.98181 0.90980 0.95292 1.22250 0.98768 0.96252 0.89741 0.91745 0.91944 0.92344 0.83365 0.82132 0.82084 0.94442 0.91405 0.93417 0.91620 0.94934 0.95487 0.92816 0.93447 0.91474 0.91371 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 7.56 37.16 0.28 -1.71 16 2 C 0.14 1.66 2.77 -68.87 -0.19 1.47 16 3 H 0.09 1.04 8.04 -51.93 -0.42 0.62 16 4 C -0.08 -0.98 4.28 -106.25 -0.46 -1.43 16 5 C -0.10 -1.31 9.17 -41.21 -0.38 -1.69 16 6 C -0.22 -2.43 11.23 29.04 0.33 -2.10 16 7 S 0.07 0.68 23.34 -107.50 -2.51 -1.83 16 8 C -0.22 -2.31 10.16 29.04 0.30 -2.02 16 9 N -0.53 -7.79 4.23 -227.87 -0.96 -8.75 16 10 C 0.06 0.95 4.75 -3.77 -0.02 0.93 16 11 C 0.06 1.28 5.24 -3.77 -0.02 1.26 16 12 N -0.54 -11.66 4.92 -235.91 -1.16 -12.82 16 13 C 0.19 4.83 5.14 -4.98 -0.03 4.81 16 14 C -0.55 -15.04 7.67 -34.44 -0.26 -15.30 16 15 H 0.06 1.61 5.81 -52.49 -0.31 1.30 16 16 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.07 1.27 5.32 -3.76 -0.02 1.25 16 23 C 0.06 0.89 5.32 -3.76 -0.02 0.87 16 24 H 0.06 0.75 6.40 -51.93 -0.33 0.42 16 25 H 0.06 0.69 6.72 -51.93 -0.35 0.34 16 26 H 0.06 0.52 6.99 -51.93 -0.36 0.16 16 27 H 0.15 2.01 8.00 -52.48 -0.42 1.59 16 28 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.16 1.46 6.65 -52.49 -0.35 1.11 16 30 H 0.04 0.60 6.42 -51.93 -0.33 0.27 16 31 H 0.07 1.05 6.89 -51.93 -0.36 0.70 16 32 H 0.05 1.05 6.45 -51.93 -0.34 0.71 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.03 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.05 1.02 6.95 -51.93 -0.36 0.66 16 38 H 0.07 1.30 8.12 -51.93 -0.42 0.87 16 39 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.04 0.57 6.72 -51.93 -0.35 0.22 16 LS Contribution 319.74 15.07 4.82 4.82 Total: -1.00 -28.73 319.74 -10.62 -39.35 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.94 Total: 0.24 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.59 Total: -11.95 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -1.39 Total: -47.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.73 -10.62 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274224122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.703 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds