Wall clock time and date at job start Tue Mar 31 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47207 * 2 1 4 4 C 1.50705 * 109.47071 * 119.99697 * 2 1 3 5 5 C 1.38422 * 122.53983 * 253.80346 * 4 2 1 6 6 C 1.33394 * 114.91787 * 179.97438 * 5 4 2 7 7 S 1.75882 * 109.59432 * 359.97438 * 6 5 4 8 8 C 1.33392 * 122.53677 * 73.50618 * 4 2 1 9 9 N 1.46898 * 109.47463 * 239.99730 * 2 1 3 10 10 C 1.46955 * 110.99957 * 176.71098 * 9 2 1 11 11 C 1.53058 * 109.38155 * 176.82518 * 10 9 2 12 12 N 1.46958 * 109.36293 * 58.38721 * 11 10 9 13 13 C 1.46902 * 110.99759 * 176.81214 * 12 11 10 14 14 C 1.50693 * 109.47134 * 190.00104 * 13 12 11 15 15 H 1.08002 * 120.00379 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00073 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99958 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00105 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47242 * 89.99764 * 18 16 14 20 20 H 1.48495 * 109.47268 * 209.99903 * 18 16 14 21 21 H 1.48501 * 109.46712 * 329.99501 * 18 16 14 22 22 C 1.46956 * 110.88348 * 300.68100 * 12 11 10 23 23 C 1.46957 * 111.01634 * 52.89908 * 9 2 1 24 24 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47351 * 300.00342 * 1 2 3 26 26 H 1.09003 * 109.46560 * 60.00182 * 1 2 3 27 27 H 1.07993 * 122.54008 * 359.97438 * 5 4 2 28 28 H 1.07997 * 125.20214 * 180.02562 * 6 5 4 29 29 H 1.07999 * 125.19856 * 0.02574 * 8 4 2 30 30 H 1.09001 * 109.48861 * 56.84787 * 10 9 2 31 31 H 1.08999 * 109.49299 * 296.80159 * 10 9 2 32 32 H 1.08993 * 109.49150 * 178.35927 * 11 10 9 33 33 H 1.08998 * 109.48507 * 298.42663 * 11 10 9 34 34 H 1.09003 * 109.47252 * 310.00493 * 13 12 11 35 35 H 1.09005 * 109.47205 * 70.00353 * 13 12 11 36 36 H 0.97003 * 119.99905 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.48801 * 179.28702 * 22 12 11 38 38 H 1.09002 * 109.48895 * 299.35544 * 22 12 11 39 39 H 1.09000 * 109.46794 * 63.19927 * 23 9 2 40 40 H 1.09001 * 109.50547 * 303.16057 * 23 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.5874 -0.0366 2.3048 6 6 2.9811 -0.8151 3.3139 7 16 2.6490 -2.4979 2.9248 8 6 1.9705 -2.0356 1.3694 9 7 2.0197 -0.6925 -1.1994 10 6 3.4866 -0.6443 -1.2732 11 6 3.9604 -1.4421 -2.4905 12 7 3.3559 -0.8805 -3.7065 13 6 3.8460 -1.5727 -4.9060 14 6 3.4035 -0.8219 -6.1353 15 1 2.8171 0.0796 -6.0357 16 6 3.7480 -1.2852 -7.3874 17 7 3.3622 -0.6296 -8.4603 18 14 4.7628 -2.8440 -7.5599 19 1 3.8568 -4.0173 -7.6475 20 1 5.5887 -2.7633 -8.7913 21 1 5.6497 -2.9905 -6.3778 22 6 1.8890 -0.9292 -3.6329 23 6 1.4153 -0.1314 -2.4157 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 2.6937 1.0379 2.3244 28 1 3.4337 -0.4655 4.2300 29 1 1.5669 -2.7200 0.6379 30 1 3.9108 -1.0771 -0.3672 31 1 3.8122 0.3916 -1.3683 32 1 5.0463 -1.3834 -2.5636 33 1 3.6587 -2.4839 -2.3822 34 1 4.9348 -1.6178 -4.8801 35 1 3.4410 -2.5844 -4.9327 36 1 3.6042 -0.9558 -9.3411 37 1 1.4648 -0.4964 -4.5389 38 1 1.5639 -1.9653 -3.5376 39 1 1.7169 0.9104 -2.5239 40 1 0.3293 -0.1899 -2.3427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274224127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:52 Heat of formation + Delta-G solvation = 32.752479 kcal Electronic energy + Delta-G solvation = -19996.520130 eV Core-core repulsion = 17130.337524 eV Total energy + Delta-G solvation = -2866.182606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75946 -38.94292 -36.55570 -34.64403 -32.50110 -31.85910 -29.87046 -29.49277 -26.60124 -25.64472 -24.14835 -23.12943 -22.03593 -20.58888 -19.47667 -18.93832 -18.51863 -17.46776 -16.51098 -16.07796 -15.91735 -15.69201 -15.46207 -15.19743 -14.92279 -14.51805 -14.24012 -13.86872 -13.66514 -13.51804 -13.30803 -13.17350 -12.83138 -12.73118 -12.58229 -12.42357 -12.23758 -12.18483 -11.90323 -11.77101 -11.52080 -11.40772 -11.24873 -10.79369 -9.61700 -9.33126 -9.24604 -9.03719 -8.28967 -6.32245 0.18780 0.83758 1.15403 1.33994 1.35541 1.46557 1.81495 2.33852 2.91004 3.03495 3.21909 3.86621 3.97946 4.14148 4.19266 4.30121 4.33416 4.37155 4.46737 4.53694 4.58030 4.62139 4.79215 4.80323 4.86168 4.87769 4.94915 4.99423 5.02050 5.11148 5.15111 5.23208 5.34152 5.50422 5.52851 5.61386 5.94679 6.06703 6.19215 6.37508 6.64476 6.73393 7.31480 8.87514 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.003810 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.255008 B = 7347.821170 C = 7867.033994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.141 3.859 3 H 0.048 0.952 4 C -0.103 4.103 5 C -0.140 4.140 6 C -0.211 4.211 7 S 0.086 5.914 8 C -0.190 4.190 9 N -0.533 5.533 10 C 0.075 3.925 11 C 0.055 3.945 12 N -0.544 5.544 13 C 0.173 3.827 14 C -0.515 4.515 15 H 0.039 0.961 16 C 0.009 3.991 17 N -0.947 5.947 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.251 1.251 22 C 0.070 3.930 23 C 0.067 3.933 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.150 0.850 28 H 0.185 0.815 29 H 0.161 0.839 30 H 0.087 0.913 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.028 0.972 35 H -0.016 1.016 36 H 0.267 0.733 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.031 0.969 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 -1.850 25.638 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 H 0.066 0.934 4 C -0.115 4.115 5 C -0.170 4.170 6 C -0.346 4.346 7 S 0.349 5.651 8 C -0.326 4.326 9 N -0.258 5.258 10 C -0.053 4.053 11 C -0.073 4.073 12 N -0.269 5.269 13 C 0.046 3.954 14 C -0.554 4.554 15 H 0.057 0.943 16 C -0.188 4.188 17 N -0.587 5.587 18 Si 0.770 3.230 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.175 1.175 22 C -0.058 4.058 23 C -0.060 4.060 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.168 0.832 28 H 0.202 0.798 29 H 0.178 0.822 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.001 0.999 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.049 0.951 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.676 -3.234 26.230 26.564 hybrid contribution 0.215 0.832 -1.640 1.852 sum -2.461 -2.402 24.590 24.829 Atomic orbital electron populations 1.21893 0.92428 1.02787 1.02556 1.20253 0.96152 0.94228 0.86283 0.93390 1.18835 1.02696 0.93296 0.96711 1.20238 1.01684 1.01907 0.93195 1.25824 1.08844 0.95289 1.04656 1.84268 1.59413 1.08448 1.12961 1.25493 1.07677 0.99063 1.00387 1.62206 1.06377 1.55387 1.01823 1.21969 0.87809 0.98435 0.97100 1.22186 0.99120 0.96368 0.89632 1.62039 1.06886 1.55867 1.02109 1.19913 0.95364 0.91630 0.88539 1.21232 1.33537 1.10308 0.90291 0.94299 1.25820 0.97053 1.00655 0.95265 1.70046 1.48208 1.41880 0.98614 0.85723 0.79418 0.79427 0.78418 1.19359 1.20529 1.17491 1.21957 0.87947 0.98186 0.97712 1.22159 0.99937 0.95852 0.88101 0.92026 0.90823 0.91749 0.83225 0.79814 0.82191 0.89502 0.95033 0.90641 0.95186 0.95352 0.99869 0.92398 0.92191 0.95672 0.95058 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.67 71.98 0.62 -1.95 16 2 C 0.14 3.04 2.36 44.17 0.10 3.15 16 3 H 0.05 1.05 8.06 -2.39 -0.02 1.03 16 4 C -0.10 -2.06 3.50 -20.92 -0.07 -2.14 16 5 C -0.14 -2.41 9.93 21.22 0.21 -2.20 16 6 C -0.21 -3.23 11.23 66.72 0.75 -2.48 16 7 S 0.09 1.46 23.34 -56.49 -1.32 0.15 16 8 C -0.19 -3.88 10.35 66.72 0.69 -3.19 16 9 N -0.53 -14.29 4.26 -874.85 -3.72 -18.01 16 10 C 0.08 2.15 5.41 86.31 0.47 2.62 16 11 C 0.06 1.90 5.61 86.31 0.48 2.39 16 12 N -0.54 -23.22 4.70 -900.27 -4.23 -27.46 16 13 C 0.17 8.52 3.79 85.55 0.32 8.84 16 14 C -0.52 -30.25 9.03 25.60 0.23 -30.02 16 15 H 0.04 2.53 7.38 -2.91 -0.02 2.51 16 16 C 0.01 0.56 5.47 84.65 0.46 1.02 16 17 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 18 Si 0.95 44.62 27.47 68.60 1.88 46.51 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 22 C 0.07 2.77 5.43 86.31 0.47 3.23 16 23 C 0.07 2.04 5.14 86.31 0.44 2.49 16 24 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.18 6.25 -2.39 -0.01 1.17 16 27 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 29 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.09 2.24 6.93 -2.39 -0.02 2.23 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.03 1.39 7.08 -2.39 -0.02 1.38 16 35 H -0.02 -0.80 7.55 -2.38 -0.02 -0.82 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.06 2.70 6.79 -2.39 -0.02 2.68 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 2.58 6.02 -2.39 -0.01 2.56 16 Total: -1.00 -65.76 325.84 -0.95 -66.72 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.95 Total: 9.61 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 5.19 Total: -18.24 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -7.66 Total: -104.74 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.32 Total: 0.15 kcal Total: -65.76 -0.95 -66.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274224127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.471 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds