Wall clock time and date at job start Tue Mar 31 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 119.99786 * 2 1 4 4 H 1.07996 * 119.99961 * 203.05568 * 3 2 1 5 5 C 1.38815 * 120.00071 * 23.06162 * 3 2 1 6 6 N 1.31619 * 119.99712 * 13.01460 * 5 3 2 7 7 Si 1.86799 * 119.99650 * 193.01129 * 5 3 2 8 8 H 1.48496 * 109.47608 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.46723 * 120.00281 * 7 5 3 10 10 H 1.48501 * 109.47093 * 239.99777 * 7 5 3 11 11 C 1.46500 * 120.00000 * 180.02562 * 2 1 3 12 12 C 1.50696 * 109.47236 * 90.00108 * 11 2 1 13 13 N 1.29029 * 124.91935 * 90.00087 * 12 11 2 14 14 C 1.31779 * 117.12432 * 180.02562 * 13 12 11 15 15 C 1.50704 * 122.74453 * 179.72737 * 14 13 12 16 16 C 1.53002 * 109.46953 * 215.02341 * 15 14 13 17 17 C 1.53000 * 109.47331 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47090 * 59.99493 * 17 16 15 19 19 C 1.52994 * 109.47224 * 300.00383 * 18 17 16 20 20 C 1.52996 * 109.47219 * 60.00101 * 19 18 17 21 21 C 1.33632 * 114.50461 * 359.97438 * 14 13 12 22 22 S 1.70982 * 124.91427 * 270.00083 * 12 11 2 23 23 H 1.08992 * 109.46857 * 275.12373 * 1 2 3 24 24 H 1.08994 * 109.46639 * 35.12903 * 1 2 3 25 25 H 1.09001 * 109.46872 * 155.12372 * 1 2 3 26 26 H 0.97001 * 119.99326 * 180.02562 * 6 5 3 27 27 H 1.09005 * 109.46936 * 330.00069 * 11 2 1 28 28 H 1.09005 * 109.47043 * 210.00117 * 11 2 1 29 29 H 1.08999 * 109.47341 * 335.02417 * 15 14 13 30 30 H 1.09000 * 109.46694 * 299.99935 * 16 15 14 31 31 H 1.08992 * 109.47349 * 60.00075 * 16 15 14 32 32 H 1.08999 * 109.46829 * 299.99993 * 17 16 15 33 33 H 1.08997 * 109.47515 * 179.97438 * 17 16 15 34 34 H 1.09003 * 109.46988 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.46876 * 60.00529 * 18 17 16 36 36 H 1.08999 * 109.47313 * 299.99878 * 19 18 17 37 37 H 1.09005 * 109.46973 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.47238 * 179.97438 * 20 19 18 39 39 H 1.09008 * 109.47541 * 60.00164 * 20 19 18 40 40 H 1.08000 * 126.03938 * 179.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2233 -0.3663 5 6 1.5388 2.3400 0.4709 6 7 0.4129 2.2593 1.1479 7 14 2.3147 4.0075 0.1439 8 1 3.5678 3.8268 -0.6322 9 1 1.3689 4.8500 -0.6313 10 1 2.6245 4.6712 1.4357 11 6 2.1976 -1.2687 -0.0006 12 6 2.4488 -1.7031 -1.4215 13 7 3.4881 -1.3871 -2.1177 14 6 3.5507 -1.8523 -3.3490 15 6 4.7030 -1.5571 -4.2744 16 6 4.1852 -1.4275 -5.7083 17 6 5.3550 -1.1283 -6.6479 18 6 6.3727 -2.2684 -6.5742 19 6 6.8905 -2.3980 -5.1404 20 6 5.7207 -2.6972 -4.2008 21 6 2.5064 -2.6031 -3.7116 22 16 1.3977 -2.6862 -2.3446 23 1 -0.3633 0.0918 1.0235 24 1 -0.3632 0.8405 -0.5913 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0141 3.0659 1.4766 27 1 1.6084 -2.0286 0.5129 28 1 3.1500 -1.1386 0.5134 29 1 5.1799 -0.6240 -3.9746 30 1 3.7083 -2.3606 -6.0081 31 1 3.4599 -0.6156 -5.7607 32 1 5.8323 -0.1954 -6.3482 33 1 4.9862 -1.0364 -7.6695 34 1 7.2064 -2.0551 -7.2433 35 1 5.8954 -3.2014 -6.8739 36 1 7.3678 -1.4651 -4.8407 37 1 7.6152 -3.2106 -5.0879 38 1 6.0896 -2.7900 -3.1793 39 1 5.2433 -3.6303 -4.5005 40 1 2.3663 -3.0750 -4.6729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277758098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:13 Heat of formation + Delta-G solvation = 25.148910 kcal Electronic energy + Delta-G solvation = -19790.366259 eV Core-core repulsion = 16923.853937 eV Total energy + Delta-G solvation = -2866.512322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12552 -38.91574 -37.46153 -33.92739 -32.72198 -31.66485 -30.13878 -28.45178 -27.93841 -25.53194 -23.77649 -23.43344 -22.16544 -20.86608 -19.96106 -18.94973 -18.37680 -17.04272 -16.74980 -15.92213 -15.79500 -15.47388 -15.23757 -15.07466 -14.92572 -14.66412 -14.31124 -13.68084 -13.49154 -13.21320 -13.10243 -13.06896 -12.84590 -12.63102 -12.50566 -12.36551 -12.05183 -12.00844 -11.92250 -11.90230 -11.35462 -11.11956 -11.02667 -10.76973 -10.42394 -10.21940 -9.54056 -8.89766 -7.88941 -5.38871 -0.10231 0.60472 0.95120 1.41048 1.42665 1.53844 1.95599 2.47881 3.15924 3.30360 3.70779 3.82193 3.87522 3.89716 4.25628 4.31420 4.38468 4.42380 4.44449 4.53231 4.61113 4.62359 4.73930 4.75856 4.78590 4.83282 4.98124 5.14115 5.24729 5.25651 5.25965 5.28222 5.30236 5.44290 5.45655 5.58094 5.61181 5.66940 6.26674 7.02818 7.10302 7.75490 8.17937 9.14137 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.004935 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.783229 B = 5672.261221 C = 6647.357790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.600 5.600 3 C -0.259 4.259 4 H 0.060 0.940 5 C -0.043 4.043 6 N -0.932 5.932 7 Si 0.964 3.036 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.285 1.285 11 C 0.215 3.785 12 C 0.043 3.957 13 N -0.504 5.504 14 C 0.058 3.942 15 C -0.010 4.010 16 C -0.105 4.105 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.099 4.099 21 C -0.266 4.266 22 S 0.121 5.879 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.033 0.967 26 H 0.251 0.749 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.460 -13.226 -15.108 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.322 5.322 3 C -0.389 4.389 4 H 0.077 0.923 5 C -0.239 4.239 6 N -0.578 5.578 7 Si 0.792 3.208 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.211 1.211 11 C 0.084 3.916 12 C -0.238 4.238 13 N -0.220 5.220 14 C -0.074 4.074 15 C -0.031 4.031 16 C -0.143 4.143 17 C -0.155 4.155 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.137 4.137 21 C -0.405 4.405 22 S 0.375 5.625 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.754 -13.238 -14.548 20.797 hybrid contribution 0.739 1.560 -0.227 1.741 sum 7.493 -11.678 -14.775 20.269 Atomic orbital electron populations 1.20643 0.81933 0.96092 0.98370 1.44079 1.02293 1.00913 1.84927 1.19379 0.98141 0.86634 1.34772 0.92258 1.25671 0.98502 1.01424 0.98288 1.70207 1.20544 1.27695 1.39380 0.85262 0.77813 0.80351 0.77371 1.20101 1.21461 1.21130 1.19525 0.97615 0.88173 0.86252 1.28833 0.92791 0.98222 1.03998 1.66115 1.25193 1.23627 1.07041 1.20642 0.98138 0.97404 0.91169 1.19756 0.91366 0.99336 0.92678 1.21581 0.98212 1.02193 0.92358 1.21538 0.95751 0.98803 0.99384 1.21535 0.98756 0.98847 0.96083 1.21539 0.96862 1.01893 0.95113 1.21478 0.95650 0.97212 0.99405 1.26956 0.98084 1.10512 1.04911 1.83568 1.25826 1.47101 1.05973 0.96335 0.96748 0.94850 0.93996 0.89509 0.91349 0.92208 0.90173 0.93190 0.92754 0.90384 0.90774 0.90995 0.92674 0.90571 0.93577 0.90944 0.78336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.62 8.98 127.77 1.15 9.77 16 2 N -0.60 -30.88 2.91 -731.31 -2.12 -33.00 16 3 C -0.26 -14.87 9.65 84.03 0.81 -14.06 16 4 H 0.06 3.51 7.86 -2.91 -0.02 3.49 16 5 C -0.04 -2.49 5.10 84.86 0.43 -2.06 16 6 N -0.93 -55.39 10.71 21.65 0.23 -55.16 16 7 Si 0.96 46.84 29.57 68.60 2.03 48.86 16 8 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 9 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 C 0.22 9.14 6.22 85.63 0.53 9.67 16 12 C 0.04 1.68 6.97 88.52 0.62 2.29 16 13 N -0.50 -20.56 10.53 -179.40 -1.89 -22.45 16 14 C 0.06 1.93 5.73 41.52 0.24 2.16 16 15 C -0.01 -0.27 2.60 -11.54 -0.03 -0.30 16 16 C -0.11 -2.22 4.70 30.60 0.14 -2.08 16 17 C -0.12 -1.98 5.92 30.60 0.18 -1.80 16 18 C -0.11 -1.65 5.92 30.59 0.18 -1.47 16 19 C -0.12 -2.02 5.92 30.59 0.18 -1.84 16 20 C -0.10 -2.20 5.18 30.59 0.16 -2.04 16 21 C -0.27 -7.47 10.35 66.77 0.69 -6.78 16 22 S 0.12 3.73 23.18 -56.49 -1.31 2.42 16 23 H 0.02 0.98 7.34 -2.39 -0.02 0.96 16 24 H 0.01 0.75 7.34 -2.39 -0.02 0.74 16 25 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 26 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.09 3.17 8.07 -2.38 -0.02 3.15 16 28 H 0.07 3.01 8.04 -2.38 -0.02 2.99 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 1.40 6.93 -2.39 -0.02 1.39 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.20 4.09 6.98 -2.91 -0.02 4.07 16 Total: -1.00 -66.22 331.82 3.23 -63.00 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.00 Total: 4.85 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.29 Total: -8.53 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.78 Total: -110.61 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.31 Total: 2.42 kcal Total: -66.22 3.23 -63.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277758098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.147 kcal (2) G-P(sol) polarization free energy of solvation -66.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds