Wall clock time and date at job start Tue Mar 31 2020 02:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00285 * 2 1 4 4 C 1.46904 * 110.99954 * 123.95216 * 2 1 3 5 5 C 1.53004 * 109.46759 * 76.70459 * 4 2 1 6 6 H 1.09005 * 109.47117 * 296.78660 * 5 4 2 7 7 N 1.46497 * 109.47174 * 56.78891 * 5 4 2 8 8 C 1.34784 * 119.99623 * 263.39046 * 7 5 4 9 9 O 1.21684 * 120.00226 * 5.37749 * 8 7 5 10 10 C 1.46378 * 119.99186 * 185.37505 * 8 7 5 11 11 H 1.07998 * 120.00598 * 7.40678 * 10 8 7 12 12 C 1.40053 * 119.99393 * 187.39704 * 10 8 7 13 13 N 1.30674 * 120.00019 * 7.46201 * 12 10 8 14 14 Si 1.86795 * 119.99797 * 187.45347 * 12 10 8 15 15 H 1.48498 * 109.47257 * 94.98393 * 14 12 10 16 16 H 1.48502 * 109.47190 * 214.97874 * 14 12 10 17 17 H 1.48504 * 109.47415 * 334.97870 * 14 12 10 18 18 C 1.50702 * 109.47011 * 176.79103 * 5 4 2 19 19 C 1.38248 * 119.97250 * 99.99942 * 18 5 4 20 20 C 1.38196 * 120.01907 * 180.02562 * 19 18 5 21 21 C 1.38458 * 119.98196 * 359.97438 * 20 19 18 22 22 F 1.35096 * 120.03009 * 180.02562 * 21 20 19 23 23 C 1.38467 * 119.94446 * 0.02562 * 21 20 19 24 24 C 1.38203 * 119.97123 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47320 * 295.06210 * 1 2 3 26 26 H 1.09000 * 109.47118 * 55.05358 * 1 2 3 27 27 H 1.08998 * 109.47181 * 175.05716 * 1 2 3 28 28 H 1.08997 * 109.47316 * 183.95120 * 3 2 1 29 29 H 1.08995 * 109.47116 * 303.95621 * 3 2 1 30 30 H 1.09003 * 109.46766 * 63.95425 * 3 2 1 31 31 H 1.08996 * 109.46794 * 316.70422 * 4 2 1 32 32 H 1.08997 * 109.47401 * 196.69879 * 4 2 1 33 33 H 0.96994 * 119.99954 * 83.39551 * 7 5 4 34 34 H 0.97003 * 119.99779 * 179.97438 * 13 12 10 35 35 H 1.07996 * 119.98952 * 0.27375 * 19 18 5 36 36 H 1.08002 * 120.01146 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.01399 * 179.97438 * 23 21 20 38 38 H 1.08002 * 119.97977 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8684 -2.2628 0.8471 6 1 0.8151 -2.5260 0.7498 7 7 2.5681 -2.5791 -0.4006 8 6 1.8812 -2.6553 -1.5577 9 8 0.6995 -2.3661 -1.5840 10 6 2.5568 -3.0859 -2.7827 11 1 3.5703 -3.4563 -2.7389 12 6 1.8887 -3.0178 -4.0118 13 7 0.7207 -2.4369 -4.0892 14 14 2.6673 -3.7571 -5.5403 15 1 2.1539 -5.1362 -5.7397 16 1 2.3245 -2.9257 -6.7220 17 1 4.1425 -3.7972 -5.3744 18 6 2.4798 -3.0478 1.9789 19 6 1.6691 -3.6035 2.9511 20 6 2.2287 -4.3231 3.9897 21 6 3.6018 -4.4880 4.0562 22 9 4.1500 -5.1918 5.0708 23 6 4.4128 -3.9310 3.0818 24 6 3.8509 -3.2117 2.0441 25 1 -0.3634 0.4353 0.9309 26 1 -0.3633 0.5887 -0.8424 27 1 -0.3633 -1.0238 -0.0885 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.4273 -0.5205 2.0349 32 1 3.0445 -0.5135 1.2914 33 1 3.5256 -2.7338 -0.3938 34 1 0.2582 -2.3894 -4.9405 35 1 0.5977 -3.4786 2.8966 36 1 1.5952 -4.7575 4.7489 37 1 5.4841 -4.0585 3.1328 38 1 4.4834 -2.7768 1.2843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291808587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:47 Heat of formation + Delta-G solvation = -48.645177 kcal Electronic energy + Delta-G solvation = -22036.109847 eV Core-core repulsion = 18600.184398 eV Total energy + Delta-G solvation = -3435.925449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.85844 -39.47073 -37.47570 -36.12546 -33.59954 -32.25054 -31.13956 -30.20227 -27.98856 -26.92728 -25.98182 -23.87624 -23.01870 -21.46474 -20.56959 -19.17719 -17.81169 -17.16547 -16.16909 -15.68691 -15.55409 -15.15814 -14.83262 -14.73218 -14.39166 -14.09887 -13.87862 -13.46744 -13.29751 -12.91870 -12.67228 -12.22637 -12.06025 -11.90837 -11.68100 -11.48195 -11.13707 -11.04666 -10.98898 -10.88921 -10.70850 -10.38730 -10.31886 -10.10763 -9.05461 -8.73806 -8.48309 -7.70958 -7.35531 -7.29137 -6.09466 -4.48490 1.20515 1.28939 3.19573 3.27206 3.29685 3.64056 4.19152 4.29482 4.46259 4.72962 4.74653 4.87770 4.90467 5.21400 5.34810 5.47494 5.53097 5.61889 5.76527 5.79924 5.89890 5.95116 6.06511 6.11732 6.14819 6.15941 6.23880 6.25887 6.34059 6.36988 6.74567 6.87259 6.95435 7.54250 7.65616 7.72621 8.06177 8.24380 8.46170 9.15805 9.69770 10.73433 10.97083 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.005324 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.577805 B = 5257.904462 C = 6419.133694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.515 5.515 3 C 0.031 3.969 4 C 0.054 3.946 5 C 0.194 3.806 6 H 0.092 0.908 7 N -0.747 5.747 8 C 0.574 3.426 9 O -0.569 6.569 10 C -0.548 4.548 11 H 0.062 0.938 12 C 0.094 3.906 13 N -0.769 5.769 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.267 1.267 18 C -0.084 4.084 19 C -0.084 4.084 20 C -0.153 4.153 21 C 0.084 3.916 22 F -0.146 7.146 23 C -0.152 4.152 24 C -0.080 4.080 25 H 0.001 0.999 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.011 0.989 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.375 0.625 34 H 0.265 0.735 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 1.335 12.959 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.238 5.238 3 C -0.117 4.117 4 C -0.076 4.076 5 C 0.087 3.913 6 H 0.110 0.890 7 N -0.401 5.401 8 C 0.377 3.623 9 O -0.450 6.450 10 C -0.585 4.585 11 H 0.081 0.919 12 C -0.126 4.126 13 N -0.398 5.398 14 Si 0.725 3.275 15 H -0.200 1.200 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.085 4.085 19 C -0.102 4.102 20 C -0.172 4.172 21 C 0.065 3.935 22 F -0.125 7.125 23 C -0.171 4.171 24 C -0.099 4.099 25 H 0.019 0.981 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.207 0.793 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.424 1.350 12.390 12.925 hybrid contribution 0.794 -0.143 0.164 0.824 sum 4.218 1.207 12.554 13.298 Atomic orbital electron populations 1.22361 0.86785 1.04035 0.97716 1.61599 1.08303 1.11756 1.42106 1.22339 1.00277 0.89829 0.99291 1.22525 0.99236 0.94965 0.90863 1.19393 0.98178 0.90706 0.83063 0.88981 1.46047 1.09862 1.78156 1.06070 1.17933 0.86386 0.76523 0.81437 1.90502 1.16555 1.53255 1.84722 1.20837 1.00844 1.45825 0.90974 0.91950 1.25585 0.94267 0.93218 0.99486 1.69990 1.12251 1.32302 1.25215 0.86493 0.80137 0.79394 0.81450 1.20017 1.20694 1.19107 1.20434 0.93713 0.97982 0.96417 1.20940 1.00302 0.96003 0.93005 1.21078 0.93075 1.02292 1.00736 1.17703 0.91882 0.96532 0.87367 1.91468 1.86250 1.76689 1.58085 1.21108 1.00258 1.00569 0.95127 1.20889 0.94783 0.97253 0.96929 0.98078 0.92200 0.89260 0.92085 0.91801 0.97103 0.95487 0.91742 0.79269 0.92455 0.84984 0.85035 0.84973 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 8.73 60.06 0.52 1.26 16 2 N -0.52 -9.74 3.97 -251.26 -1.00 -10.73 16 3 C 0.03 0.49 9.51 60.06 0.57 1.06 16 4 C 0.05 0.89 4.67 -3.82 -0.02 0.87 16 5 C 0.19 3.46 2.38 -69.08 -0.16 3.29 16 6 H 0.09 1.87 6.16 -51.93 -0.32 1.55 16 7 N -0.75 -15.71 4.78 -56.34 -0.27 -15.98 16 8 C 0.57 15.39 7.28 -12.98 -0.09 15.29 16 9 O -0.57 -16.77 12.00 5.20 0.06 -16.71 16 10 C -0.55 -15.17 9.54 -35.63 -0.34 -15.51 16 11 H 0.06 1.62 7.86 -52.49 -0.41 1.20 16 12 C 0.09 2.58 5.48 -17.36 -0.10 2.48 16 13 N -0.77 -22.54 11.92 55.55 0.66 -21.88 16 14 Si 0.90 20.22 29.56 -169.99 -5.03 15.19 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C -0.08 -1.23 4.96 -104.62 -0.52 -1.75 16 19 C -0.08 -1.11 9.67 -39.59 -0.38 -1.49 16 20 C -0.15 -1.87 10.03 -39.52 -0.40 -2.27 16 21 C 0.08 1.09 7.30 -39.42 -0.29 0.80 16 22 F -0.15 -1.91 17.27 2.25 0.04 -1.87 16 23 C -0.15 -1.87 10.03 -39.51 -0.40 -2.27 16 24 C -0.08 -1.07 9.17 -39.60 -0.36 -1.43 16 25 H 0.00 0.01 8.06 -51.93 -0.42 -0.40 16 26 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 27 H 0.09 1.93 5.47 -51.93 -0.28 1.64 16 28 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 29 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.03 0.41 7.93 -51.93 -0.41 0.00 16 32 H 0.06 0.99 7.87 -51.93 -0.41 0.58 16 33 H 0.38 7.13 6.96 -40.82 -0.28 6.85 16 34 H 0.26 7.14 8.29 -40.82 -0.34 6.80 16 35 H 0.13 1.56 8.03 -52.49 -0.42 1.14 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.13 1.64 6.81 -52.49 -0.36 1.29 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -32.07 321.51 -7.63 -39.70 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.98 Total: 7.09 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.96 Total: 0.35 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.60 Total: -48.59 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.06 Total: -16.71 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.07 -7.63 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291808587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.948 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds