Wall clock time and date at job start Tue Mar 31 2020 02:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00285 * 2 1 4 4 C 1.46904 * 110.99954 * 123.95216 * 2 1 3 5 5 C 1.53004 * 109.46759 * 76.70459 * 4 2 1 6 6 H 1.09005 * 109.47117 * 296.78660 * 5 4 2 7 7 N 1.46497 * 109.47174 * 56.78891 * 5 4 2 8 8 C 1.34784 * 119.99623 * 263.39046 * 7 5 4 9 9 O 1.21684 * 120.00226 * 5.37749 * 8 7 5 10 10 C 1.46378 * 119.99186 * 185.37505 * 8 7 5 11 11 H 1.07998 * 120.00598 * 7.40678 * 10 8 7 12 12 C 1.40053 * 119.99393 * 187.39704 * 10 8 7 13 13 N 1.30674 * 120.00019 * 7.46201 * 12 10 8 14 14 Si 1.86795 * 119.99797 * 187.45347 * 12 10 8 15 15 H 1.48498 * 109.47257 * 94.98393 * 14 12 10 16 16 H 1.48502 * 109.47190 * 214.97874 * 14 12 10 17 17 H 1.48504 * 109.47415 * 334.97870 * 14 12 10 18 18 C 1.50702 * 109.47011 * 176.79103 * 5 4 2 19 19 C 1.38248 * 119.97250 * 99.99942 * 18 5 4 20 20 C 1.38196 * 120.01907 * 180.02562 * 19 18 5 21 21 C 1.38458 * 119.98196 * 359.97438 * 20 19 18 22 22 F 1.35096 * 120.03009 * 180.02562 * 21 20 19 23 23 C 1.38467 * 119.94446 * 0.02562 * 21 20 19 24 24 C 1.38203 * 119.97123 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47320 * 295.06210 * 1 2 3 26 26 H 1.09000 * 109.47118 * 55.05358 * 1 2 3 27 27 H 1.08998 * 109.47181 * 175.05716 * 1 2 3 28 28 H 1.08997 * 109.47316 * 183.95120 * 3 2 1 29 29 H 1.08995 * 109.47116 * 303.95621 * 3 2 1 30 30 H 1.09003 * 109.46766 * 63.95425 * 3 2 1 31 31 H 1.08996 * 109.46794 * 316.70422 * 4 2 1 32 32 H 1.08997 * 109.47401 * 196.69879 * 4 2 1 33 33 H 0.96994 * 119.99954 * 83.39551 * 7 5 4 34 34 H 0.97003 * 119.99779 * 179.97438 * 13 12 10 35 35 H 1.07996 * 119.98952 * 0.27375 * 19 18 5 36 36 H 1.08002 * 120.01146 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.01399 * 179.97438 * 23 21 20 38 38 H 1.08002 * 119.97977 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8684 -2.2628 0.8471 6 1 0.8151 -2.5260 0.7498 7 7 2.5681 -2.5791 -0.4006 8 6 1.8812 -2.6553 -1.5577 9 8 0.6995 -2.3661 -1.5840 10 6 2.5568 -3.0859 -2.7827 11 1 3.5703 -3.4563 -2.7389 12 6 1.8887 -3.0178 -4.0118 13 7 0.7207 -2.4369 -4.0892 14 14 2.6673 -3.7571 -5.5403 15 1 2.1539 -5.1362 -5.7397 16 1 2.3245 -2.9257 -6.7220 17 1 4.1425 -3.7972 -5.3744 18 6 2.4798 -3.0478 1.9789 19 6 1.6691 -3.6035 2.9511 20 6 2.2287 -4.3231 3.9897 21 6 3.6018 -4.4880 4.0562 22 9 4.1500 -5.1918 5.0708 23 6 4.4128 -3.9310 3.0818 24 6 3.8509 -3.2117 2.0441 25 1 -0.3634 0.4353 0.9309 26 1 -0.3633 0.5887 -0.8424 27 1 -0.3633 -1.0238 -0.0885 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.4273 -0.5205 2.0349 32 1 3.0445 -0.5135 1.2914 33 1 3.5256 -2.7338 -0.3938 34 1 0.2582 -2.3894 -4.9405 35 1 0.5977 -3.4786 2.8966 36 1 1.5952 -4.7575 4.7489 37 1 5.4841 -4.0585 3.1328 38 1 4.4834 -2.7768 1.2843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291808587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:47 Heat of formation + Delta-G solvation = -69.818080 kcal Electronic energy + Delta-G solvation = -22037.027973 eV Core-core repulsion = 18600.184398 eV Total energy + Delta-G solvation = -3436.843575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.86740 -40.70405 -38.98685 -37.80232 -35.21707 -34.29495 -32.18409 -31.67741 -29.32019 -28.34496 -27.94376 -25.21210 -24.07142 -22.68057 -22.19892 -20.83072 -19.26896 -18.54212 -17.50621 -17.21998 -16.80538 -16.56593 -16.23894 -16.09357 -15.73788 -15.63755 -15.35428 -14.63216 -14.44304 -14.20777 -14.16518 -13.86149 -13.55120 -13.29398 -13.14546 -12.92350 -12.75216 -12.64646 -12.50890 -12.38711 -12.15954 -12.06131 -11.91386 -11.72466 -10.79564 -10.04309 -9.63220 -9.45488 -9.24630 -8.87557 -8.14608 -6.63432 0.14598 0.29923 1.43425 1.44602 1.57964 2.31838 2.58898 2.69433 3.13600 3.28067 3.31452 3.81040 3.84485 3.96456 4.00347 4.23008 4.29930 4.35722 4.43427 4.48699 4.54391 4.65162 4.71985 4.80070 4.92334 5.00034 5.00840 5.06497 5.16165 5.27740 5.29321 5.45993 5.59170 5.93235 6.08848 6.27101 6.34791 6.44170 6.57694 7.05398 7.80483 8.70658 8.94776 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.005324 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.577805 B = 5257.904462 C = 6419.133694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.551 5.551 3 C 0.034 3.966 4 C 0.061 3.939 5 C 0.200 3.800 6 H 0.060 0.940 7 N -0.736 5.736 8 C 0.563 3.437 9 O -0.604 6.604 10 C -0.579 4.579 11 H 0.074 0.926 12 C 0.040 3.960 13 N -0.818 5.818 14 Si 0.981 3.019 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.253 1.253 18 C -0.098 4.098 19 C -0.088 4.088 20 C -0.149 4.149 21 C 0.079 3.921 22 F -0.147 7.147 23 C -0.147 4.147 24 C -0.082 4.082 25 H 0.030 0.970 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.386 0.614 34 H 0.268 0.732 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 0.957 13.983 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.274 5.274 3 C -0.114 4.114 4 C -0.069 4.069 5 C 0.093 3.907 6 H 0.078 0.922 7 N -0.390 5.390 8 C 0.366 3.634 9 O -0.488 6.488 10 C -0.616 4.616 11 H 0.092 0.908 12 C -0.175 4.175 13 N -0.448 5.448 14 Si 0.803 3.197 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.176 1.176 18 C -0.100 4.100 19 C -0.107 4.107 20 C -0.167 4.167 21 C 0.059 3.941 22 F -0.125 7.125 23 C -0.166 4.166 24 C -0.101 4.101 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.220 0.780 34 H 0.078 0.922 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.331 0.976 13.464 14.514 hybrid contribution 0.224 -0.035 -0.028 0.228 sum 5.555 0.941 13.437 14.570 Atomic orbital electron populations 1.22112 0.87459 1.01738 0.98428 1.61536 1.08141 1.13881 1.43864 1.22321 1.00561 0.88360 1.00123 1.22473 1.00243 0.93461 0.90708 1.19373 0.96249 0.92401 0.82648 0.92194 1.45673 1.10239 1.77037 1.06050 1.18098 0.86165 0.76254 0.82917 1.90483 1.18047 1.54540 1.85746 1.21356 1.01657 1.46478 0.92097 0.90775 1.26648 0.94606 0.93139 1.03137 1.70145 1.14215 1.34023 1.26409 0.85248 0.79609 0.78284 0.76580 1.19512 1.20079 1.17624 1.20191 0.94585 0.99115 0.96101 1.21042 1.00706 0.95937 0.92991 1.21277 0.93274 1.01492 1.00669 1.17890 0.92266 0.96460 0.87447 1.91473 1.86266 1.76687 1.58100 1.21309 1.01459 0.99542 0.94266 1.20950 0.94141 0.97475 0.97503 0.95219 0.93805 0.92655 0.91250 0.92631 0.94747 0.93700 0.90170 0.78010 0.92186 0.84261 0.82807 0.82703 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.97 8.73 127.69 1.11 3.08 16 2 N -0.55 -20.81 3.97 -948.85 -3.77 -24.57 16 3 C 0.03 1.05 9.51 127.69 1.21 2.26 16 4 C 0.06 1.93 4.67 86.30 0.40 2.34 16 5 C 0.20 7.14 2.38 44.25 0.11 7.24 16 6 H 0.06 2.54 6.16 -2.38 -0.01 2.52 16 7 N -0.74 -31.20 4.78 -450.38 -2.15 -33.35 16 8 C 0.56 31.00 7.28 86.36 0.63 31.62 16 9 O -0.60 -37.17 12.00 -4.30 -0.05 -37.22 16 10 C -0.58 -32.44 9.54 24.83 0.24 -32.20 16 11 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 12 C 0.04 2.20 5.48 85.31 0.47 2.67 16 13 N -0.82 -49.37 11.92 21.84 0.26 -49.11 16 14 Si 0.98 41.64 29.56 68.60 2.03 43.67 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 16 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 18 C -0.10 -2.79 4.96 -19.86 -0.10 -2.88 16 19 C -0.09 -2.21 9.67 22.26 0.22 -1.99 16 20 C -0.15 -3.29 10.03 22.31 0.22 -3.07 16 21 C 0.08 1.82 7.30 22.38 0.16 1.98 16 22 F -0.15 -3.45 17.27 44.97 0.78 -2.67 16 23 C -0.15 -3.23 10.03 22.32 0.22 -3.01 16 24 C -0.08 -2.03 9.17 22.26 0.20 -1.82 16 25 H 0.03 0.95 8.06 -2.39 -0.02 0.93 16 26 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 27 H 0.05 2.51 5.47 -2.39 -0.01 2.50 16 28 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 29 H 0.05 1.75 8.11 -2.39 -0.02 1.73 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 1.28 7.93 -2.39 -0.02 1.26 16 32 H 0.08 2.30 7.87 -2.39 -0.02 2.28 16 33 H 0.39 14.50 6.96 -92.71 -0.65 13.85 16 34 H 0.27 14.89 8.29 -92.71 -0.77 14.12 16 35 H 0.14 3.20 8.03 -2.91 -0.02 3.18 16 36 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.14 3.18 6.81 -2.91 -0.02 3.16 16 Total: -1.00 -70.90 321.51 2.63 -68.27 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.43 Total: 28.76 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.10 Total: 6.22 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -5.66 Total: -107.04 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.05 Total: -37.22 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -70.90 2.63 -68.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291808587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.544 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds