Wall clock time and date at job start Tue Mar 31 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47093 * 2 1 4 4 C 1.36940 * 119.99968 * 275.82986 * 3 2 1 5 5 H 1.08003 * 120.00027 * 319.65108 * 4 3 2 6 6 C 1.38812 * 120.00242 * 139.65733 * 4 3 2 7 7 N 1.31628 * 119.99723 * 0.78236 * 6 4 3 8 8 Si 1.86793 * 120.00421 * 180.78111 * 6 4 3 9 9 H 1.48498 * 109.46884 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47235 * 119.99914 * 8 6 4 11 11 H 1.48494 * 109.47243 * 240.00015 * 8 6 4 12 12 C 1.46504 * 120.00207 * 95.82656 * 3 2 1 13 13 H 1.09000 * 109.47197 * 182.66256 * 12 3 2 14 14 C 1.53003 * 109.47027 * 302.66621 * 12 3 2 15 15 C 1.50697 * 109.46831 * 62.66278 * 12 3 2 16 16 O 1.21290 * 120.00168 * 0.02562 * 15 12 3 17 17 N 1.34781 * 120.00101 * 179.97438 * 15 12 3 18 18 C 1.39918 * 120.00154 * 175.31729 * 17 15 12 19 19 C 1.38906 * 120.05696 * 215.00922 * 18 17 15 20 20 C 1.38099 * 119.98031 * 179.72831 * 19 18 17 21 21 C 1.38267 * 120.09455 * 0.56722 * 20 19 18 22 22 C 1.38490 * 120.11407 * 359.69838 * 21 20 19 23 23 F 1.35100 * 119.98948 * 180.02562 * 22 21 20 24 24 C 1.38353 * 120.01809 * 0.02562 * 22 21 20 25 25 H 1.08998 * 109.47127 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47372 * 300.00149 * 1 2 3 27 27 H 1.09000 * 109.47135 * 60.00133 * 1 2 3 28 28 H 1.09001 * 109.47372 * 239.99851 * 2 1 3 29 29 H 1.08996 * 109.47582 * 119.99684 * 2 1 3 30 30 H 0.96999 * 119.99637 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46988 * 59.99789 * 14 12 3 32 32 H 1.09003 * 109.47173 * 179.97438 * 14 12 3 33 33 H 1.09004 * 109.46605 * 299.99771 * 14 12 3 34 34 H 0.96996 * 119.99663 * 355.04404 * 17 15 12 35 35 H 1.08004 * 120.01072 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.95367 * 180.29179 * 20 19 18 37 37 H 1.08001 * 119.94797 * 179.73088 * 21 20 19 38 38 H 1.08001 * 120.04620 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1329 2.0669 -1.1798 5 1 2.5062 1.5665 -2.0611 6 6 1.7695 3.4051 -1.2430 7 7 1.3292 4.0191 -0.1652 8 14 1.9053 4.3346 -2.8576 9 1 2.4227 3.4245 -3.9107 10 1 0.5653 4.8376 -3.2534 11 1 2.8351 5.4805 -2.6923 12 6 2.3839 2.0290 1.2622 13 1 2.6770 3.0610 1.0694 14 6 1.1846 2.0083 2.2121 15 6 3.5359 1.2887 1.8913 16 8 4.0057 0.3161 1.3395 17 7 4.0450 1.7080 3.0668 18 6 5.0481 0.9656 3.6994 19 6 5.0882 0.8899 5.0858 20 6 6.0757 0.1521 5.7084 21 6 7.0321 -0.5021 4.9540 22 6 6.9991 -0.4248 3.5716 23 9 7.9345 -1.0655 2.8369 24 6 6.0086 0.3084 2.9428 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.0749 4.9541 -0.2094 31 1 0.8916 0.9762 2.4049 32 1 1.4568 2.4898 3.1514 33 1 0.3514 2.5437 1.7570 34 1 3.7186 2.5266 3.4721 35 1 4.3449 1.4046 5.6766 36 1 6.1036 0.0897 6.7862 37 1 7.8059 -1.0749 5.4435 38 1 5.9822 0.3686 1.8648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299353436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:09 Heat of formation + Delta-G solvation = -33.164291 kcal Electronic energy + Delta-G solvation = -22206.933313 eV Core-core repulsion = 18771.679165 eV Total energy + Delta-G solvation = -3435.254148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.74999 -40.10783 -38.17661 -35.85476 -34.24063 -31.88636 -31.08447 -30.43435 -29.06154 -28.25503 -24.32276 -23.69244 -22.71094 -22.04214 -20.80637 -19.37783 -18.08720 -16.96394 -16.54748 -16.16050 -15.69351 -15.41798 -15.31821 -14.75670 -14.36392 -14.01237 -13.58966 -13.46389 -13.25203 -13.00381 -12.38969 -12.32851 -11.89153 -11.85251 -11.64984 -11.43557 -11.30196 -11.09367 -11.03959 -10.78438 -10.36844 -10.23991 -10.05664 -9.87035 -9.62923 -8.96724 -8.66601 -8.57877 -8.00086 -6.60348 -5.95104 -3.51692 1.21447 1.33015 3.26044 3.29016 3.38288 3.41199 3.46716 3.78969 4.37859 4.42874 4.84281 5.07446 5.16392 5.24297 5.35507 5.44595 5.55701 5.78322 6.04617 6.19334 6.20805 6.24352 6.31285 6.38316 6.40290 6.48732 6.55884 6.60816 6.67888 6.78931 7.05090 7.13548 7.21760 7.29821 7.36748 7.74253 7.83839 8.45577 8.76299 9.13724 9.68678 10.28396 11.11682 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.004718 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.924418 B = 5933.500400 C = 6128.445441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 N -0.562 5.562 4 C -0.251 4.251 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.903 5.903 8 Si 0.906 3.094 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.171 3.829 13 H 0.136 0.864 14 C -0.137 4.137 15 C 0.486 3.514 16 O -0.520 6.520 17 N -0.685 5.685 18 C 0.191 3.809 19 C -0.167 4.167 20 C -0.074 4.074 21 C -0.185 4.185 22 C 0.115 3.885 23 F -0.141 7.141 24 C -0.163 4.163 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.257 0.743 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.411 0.589 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 -3.457 11.989 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.024 3.976 3 N -0.281 5.281 4 C -0.381 4.381 5 H 0.082 0.918 6 C -0.185 4.185 7 N -0.546 5.546 8 Si 0.735 3.265 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.059 3.941 13 H 0.153 0.847 14 C -0.196 4.196 15 C 0.274 3.726 16 O -0.393 6.393 17 N -0.332 5.332 18 C 0.094 3.906 19 C -0.188 4.188 20 C -0.093 4.093 21 C -0.205 4.205 22 C 0.095 3.905 23 F -0.120 7.120 24 C -0.184 4.184 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.247 0.753 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.296 -4.013 11.433 13.224 hybrid contribution 0.069 0.822 -0.662 1.058 sum 5.365 -3.191 10.771 12.449 Atomic orbital electron populations 1.22380 0.99692 0.98470 1.01972 1.20766 0.91300 0.86620 0.98893 1.43487 1.72151 1.10405 1.02007 1.19222 1.36707 0.93586 0.88561 0.91821 1.25381 0.97468 0.98417 0.97248 1.69765 1.46932 1.10970 1.26960 0.86167 0.77349 0.79536 0.83455 1.20092 1.21358 1.21552 1.20526 0.88306 0.98997 0.86293 0.84749 1.22089 1.00510 0.99849 0.97162 1.24013 0.85352 0.84923 0.78262 1.90575 1.60883 1.27267 1.60561 1.44329 1.37517 1.27066 1.24242 1.17686 0.88142 0.93677 0.91055 1.20999 1.01350 1.03685 0.92771 1.20702 0.93412 0.95496 0.99669 1.21006 1.02532 1.05068 0.91864 1.17547 0.88335 0.95454 0.89122 1.91485 1.63342 1.79631 1.77500 1.21341 0.93526 1.00919 1.02655 0.95110 0.93330 0.92806 0.94336 0.94074 0.93298 0.94654 0.94610 0.89891 0.75303 0.85209 0.85051 0.85194 0.82999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 10.00 37.15 0.37 -2.95 16 2 C 0.15 3.34 5.03 -4.05 -0.02 3.32 16 3 N -0.56 -13.66 2.12 -166.98 -0.35 -14.02 16 4 C -0.25 -6.66 9.50 -15.06 -0.14 -6.80 16 5 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 6 C 0.01 0.36 5.24 -17.43 -0.09 0.27 16 7 N -0.90 -23.34 10.33 55.49 0.57 -22.77 16 8 Si 0.91 20.81 29.55 -169.99 -5.02 15.78 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.17 3.71 2.16 -69.08 -0.15 3.56 16 13 H 0.14 3.23 5.84 -51.93 -0.30 2.92 16 14 C -0.14 -2.61 7.91 37.16 0.29 -2.32 16 15 C 0.49 9.87 6.70 -10.98 -0.07 9.79 16 16 O -0.52 -12.07 12.29 5.55 0.07 -12.00 16 17 N -0.68 -10.96 5.19 -9.87 -0.05 -11.01 16 18 C 0.19 2.94 6.29 -83.71 -0.53 2.42 16 19 C -0.17 -2.01 9.96 -39.38 -0.39 -2.41 16 20 C -0.07 -0.80 10.04 -39.62 -0.40 -1.19 16 21 C -0.18 -2.24 10.02 -39.48 -0.40 -2.64 16 22 C 0.12 1.75 7.30 -39.45 -0.29 1.46 16 23 F -0.14 -2.23 17.27 2.25 0.04 -2.19 16 24 C -0.16 -2.78 8.68 -39.33 -0.34 -3.12 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.96 6.11 -51.93 -0.32 0.64 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 29 H 0.04 0.91 6.61 -51.93 -0.34 0.57 16 30 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 31 H 0.03 0.65 6.63 -51.93 -0.34 0.31 16 32 H 0.03 0.56 7.68 -51.93 -0.40 0.16 16 33 H 0.08 1.78 7.60 -51.93 -0.39 1.39 16 34 H 0.41 5.36 8.40 -40.82 -0.34 5.02 16 35 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.15 3.00 6.23 -52.49 -0.33 2.67 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -28.88 316.69 -6.98 -35.86 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.85 Total: 6.17 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.15 Total: -0.61 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.17 Total: -47.79 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.88 -6.98 -35.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299353436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.697 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds