Wall clock time and date at job start Tue Mar 31 2020 02:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46965 * 2 1 4 4 C 1.36941 * 120.00091 * 265.61981 * 3 2 1 5 5 H 1.08002 * 119.99571 * 149.13755 * 4 3 2 6 6 C 1.38811 * 119.99881 * 329.13693 * 4 3 2 7 7 N 1.31618 * 120.00038 * 332.72628 * 6 4 3 8 8 Si 1.86795 * 119.99900 * 152.72970 * 6 4 3 9 9 H 1.48501 * 109.47079 * 84.99875 * 8 6 4 10 10 H 1.48502 * 109.47191 * 204.99672 * 8 6 4 11 11 H 1.48503 * 109.47422 * 324.99955 * 8 6 4 12 12 C 1.46507 * 119.99982 * 85.62431 * 3 2 1 13 13 C 1.50693 * 109.47407 * 89.99965 * 12 3 2 14 14 C 1.33638 * 122.75333 * 94.70495 * 13 12 3 15 15 S 1.76197 * 107.92829 * 179.97438 * 14 13 12 16 16 C 1.70975 * 90.28030 * 0.27926 * 15 14 13 17 17 C 1.50702 * 124.91576 * 179.83924 * 16 15 14 18 18 C 1.54259 * 110.03513 * 57.90549 * 17 16 15 19 19 C 1.54967 * 104.16158 * 217.13825 * 18 17 16 20 20 C 1.54879 * 102.77566 * 37.88782 * 19 18 17 21 21 C 1.53872 * 110.03043 * 300.68556 * 17 16 15 22 22 N 1.29028 * 110.16861 * 359.83622 * 16 15 14 23 23 H 1.08995 * 109.47331 * 59.99618 * 1 2 3 24 24 H 1.09001 * 109.46599 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47061 * 299.99565 * 1 2 3 26 26 H 1.09005 * 109.47672 * 120.00016 * 2 1 3 27 27 H 1.08998 * 109.47061 * 240.00435 * 2 1 3 28 28 H 0.96995 * 120.00066 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46528 * 210.00232 * 12 3 2 30 30 H 1.08996 * 109.46953 * 329.99574 * 12 3 2 31 31 H 1.08001 * 126.03658 * 0.04094 * 14 13 12 32 32 H 1.09004 * 110.01549 * 179.29770 * 17 16 15 33 33 H 1.09007 * 110.48410 * 335.78729 * 18 17 16 34 34 H 1.09001 * 110.48907 * 98.42735 * 18 17 16 35 35 H 1.08994 * 110.71536 * 279.57112 * 19 18 17 36 36 H 1.08996 * 110.92000 * 156.29451 * 19 18 17 37 37 H 1.09007 * 110.48796 * 203.40738 * 20 19 18 38 38 H 1.08995 * 110.60278 * 80.81786 * 20 19 18 39 39 H 1.09007 * 110.03611 * 238.56969 * 21 17 16 40 40 H 1.09004 * 110.03462 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3319 1.9966 -1.1825 5 1 2.2073 3.0645 -1.2850 6 6 2.8099 1.2479 -2.2491 7 7 3.4591 0.1249 -2.0263 8 14 2.5317 1.8341 -4.0007 9 1 3.6020 2.7919 -4.3780 10 1 2.5613 0.6704 -4.9228 11 1 1.2107 2.5061 -4.0940 12 6 2.1712 2.1042 1.2651 13 6 3.5592 1.8799 1.8073 14 6 4.5689 2.7257 1.5817 15 16 5.9997 2.0901 2.3901 16 6 5.1000 0.7460 2.9441 17 6 5.6535 -0.3749 3.7857 18 6 6.2428 0.1888 5.0951 19 6 7.4958 -0.6855 5.3543 20 6 8.0629 -0.9021 3.9294 21 6 6.8100 -1.0686 3.0448 22 7 3.8784 0.8302 2.5374 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.7928 -0.3985 -2.7716 29 1 2.0149 3.1696 1.0958 30 1 1.4371 1.7389 1.9833 31 1 4.5169 3.6383 1.0065 32 1 4.8677 -1.0962 4.0099 33 1 6.5265 1.2335 4.9672 34 1 5.5281 0.0839 5.9114 35 1 7.2155 -1.6364 5.8072 36 1 8.2155 -0.1583 5.9804 37 1 8.6761 -1.8027 3.8957 38 1 8.6420 -0.0353 3.6112 39 1 6.5859 -2.1269 2.9102 40 1 6.9712 -0.5943 2.0767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299571804.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:17 Heat of formation + Delta-G solvation = 46.214818 kcal Electronic energy + Delta-G solvation = -20017.597815 eV Core-core repulsion = 17151.998979 eV Total energy + Delta-G solvation = -2865.598835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.33568 -37.81500 -35.66251 -31.80391 -31.02802 -29.39883 -28.70092 -27.82901 -26.06656 -23.67296 -22.98051 -20.73479 -20.55652 -19.78800 -18.87064 -17.13178 -16.36760 -15.77296 -15.17517 -14.84500 -14.29577 -14.18458 -13.71350 -13.49437 -13.23967 -13.03496 -12.36934 -12.24230 -12.00469 -11.50229 -11.44679 -11.24452 -11.13094 -11.09990 -10.87495 -10.84333 -10.80568 -10.67985 -10.53912 -10.45208 -10.03426 -9.90271 -9.54527 -8.95370 -8.64992 -8.45673 -7.93568 -6.70315 -5.83366 -3.27858 1.45924 2.08410 2.47379 3.34222 3.42333 3.45166 3.63954 4.44628 4.48473 4.60492 4.66003 5.00951 5.28298 5.43212 5.51525 5.53210 5.62686 5.63204 5.69005 5.76294 5.85782 5.93802 6.03050 6.07664 6.18351 6.23851 6.30653 6.37581 6.37789 6.52686 6.61130 6.71949 6.76906 6.98028 7.01846 7.32337 7.75574 7.81132 8.43554 8.57961 9.14133 9.79057 10.35515 11.16919 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.004959 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.319327 B = 5644.842588 C = 5865.839819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 N -0.567 5.567 4 C -0.259 4.259 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.876 5.876 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.209 3.791 13 C 0.071 3.929 14 C -0.244 4.244 15 S 0.055 5.945 16 C 0.052 3.948 17 C -0.012 4.012 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.120 4.120 22 N -0.456 5.456 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.094 0.906 28 H 0.254 0.746 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.166 0.834 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -0.300 12.556 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 N -0.285 5.285 4 C -0.389 4.389 5 H 0.083 0.917 6 C -0.190 4.190 7 N -0.517 5.517 8 Si 0.723 3.277 9 H -0.212 1.212 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.079 3.921 13 C -0.063 4.063 14 C -0.384 4.384 15 S 0.307 5.693 16 C -0.228 4.228 17 C -0.034 4.034 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.159 4.159 22 N -0.170 5.170 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.183 0.817 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.062 -0.512 12.639 14.488 hybrid contribution -0.787 0.337 -1.572 1.791 sum 6.275 -0.175 11.067 12.723 Atomic orbital electron populations 1.22267 1.00632 0.98749 1.00394 1.20964 0.89862 0.85892 1.02083 1.44183 1.71920 1.12246 1.00122 1.19110 1.38157 0.93248 0.88361 0.91700 1.25035 0.96940 0.98002 0.99032 1.70107 1.34504 1.16602 1.30513 0.86466 0.78483 0.77858 0.84929 1.21250 1.21481 1.20322 1.19761 0.87101 0.96789 0.88443 1.21745 1.01419 0.88525 0.94566 1.26643 0.93783 1.07305 1.10657 1.83398 1.17620 1.19954 1.48312 1.26816 0.92426 1.00068 1.03448 1.20351 0.97659 0.92861 0.92554 1.22544 0.97109 0.99794 0.96160 1.22497 0.96833 0.99794 0.96912 1.22378 0.97229 1.01676 0.94892 1.22294 0.93403 1.00957 0.99199 1.66093 1.16235 1.22536 1.12158 0.93293 0.94649 0.94738 0.95313 0.88831 0.93553 0.92110 0.92845 0.81653 0.88557 0.91123 0.91103 0.91354 0.91471 0.91562 0.91507 0.91017 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.24 37.16 0.38 -2.99 16 2 C 0.14 3.40 5.99 -4.04 -0.02 3.37 16 3 N -0.57 -14.28 2.45 -174.60 -0.43 -14.71 16 4 C -0.26 -7.01 9.48 -15.06 -0.14 -7.15 16 5 H 0.07 1.73 7.96 -52.49 -0.42 1.31 16 6 C 0.01 0.30 4.82 -17.43 -0.08 0.22 16 7 N -0.88 -25.47 11.45 55.49 0.64 -24.84 16 8 Si 0.89 21.48 29.63 -169.99 -5.04 16.44 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.21 4.60 6.12 -5.19 -0.03 4.57 16 13 C 0.07 1.54 6.32 -84.23 -0.53 1.01 16 14 C -0.24 -4.91 11.12 29.12 0.32 -4.59 16 15 S 0.05 0.94 22.03 -107.50 -2.37 -1.43 16 16 C 0.05 0.94 5.86 -13.45 -0.08 0.86 16 17 C -0.01 -0.17 3.39 -90.66 -0.31 -0.48 16 18 C -0.12 -1.35 6.33 -25.03 -0.16 -1.50 16 19 C -0.12 -1.16 6.91 -24.70 -0.17 -1.33 16 20 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 21 C -0.12 -1.59 6.36 -25.61 -0.16 -1.75 16 22 N -0.46 -9.75 10.53 -8.06 -0.08 -9.83 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.72 8.11 -51.93 -0.42 0.29 16 27 H 0.09 2.60 5.31 -51.93 -0.28 2.32 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.06 1.24 8.00 -51.93 -0.42 0.83 16 30 H 0.05 1.11 8.07 -51.93 -0.42 0.69 16 31 H 0.17 3.12 8.06 -52.49 -0.42 2.70 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.07 0.84 7.21 -51.92 -0.37 0.47 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 40 H 0.07 1.11 7.41 -51.93 -0.38 0.72 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -30.09 337.05 -9.86 -39.95 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.49 Total: 0.57 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.16 Total: -11.23 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.12 Total: -49.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.04 Total: 16.44 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.37 Total: -1.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.09 -9.86 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299571804.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.164 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds