Wall clock time and date at job start Tue Mar 31 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 C 1.50696 * 109.46919 * 240.00094 * 2 1 3 5 5 H 1.08003 * 119.99838 * 240.00356 * 4 2 1 6 6 C 1.37883 * 120.00417 * 59.99750 * 4 2 1 7 7 N 1.31516 * 119.99505 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47194 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46886 * 120.00595 * 8 6 4 11 11 H 1.48500 * 109.46789 * 240.00287 * 8 6 4 12 12 C 1.52997 * 109.46902 * 119.99936 * 2 1 3 13 13 N 1.46502 * 109.47437 * 299.99807 * 12 2 1 14 14 C 1.34773 * 120.00170 * 180.02562 * 13 12 2 15 15 O 1.21588 * 119.99902 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00097 * 179.97438 * 14 13 12 17 17 C 1.39945 * 120.00114 * 184.62099 * 16 14 13 18 18 C 1.38902 * 120.05298 * 324.88650 * 17 16 14 19 19 C 1.38111 * 119.97592 * 180.02562 * 18 17 16 20 20 C 1.38267 * 120.09348 * 359.97438 * 19 18 17 21 21 C 1.38486 * 120.11379 * 0.02562 * 20 19 18 22 22 F 1.35108 * 119.98634 * 180.02562 * 21 20 19 23 23 C 1.38350 * 120.02077 * 359.97438 * 21 20 19 24 24 H 1.09005 * 109.46799 * 300.00215 * 1 2 3 25 25 H 1.09006 * 109.47043 * 59.99871 * 1 2 3 26 26 H 1.08990 * 109.47304 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46825 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47197 * 299.99812 * 3 2 1 29 29 H 1.08996 * 109.47431 * 60.00166 * 3 2 1 30 30 H 0.96995 * 119.99484 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47076 * 179.97438 * 12 2 1 32 32 H 1.09007 * 109.47193 * 60.00202 * 12 2 1 33 33 H 0.96996 * 119.99560 * 0.02562 * 13 12 2 34 34 H 0.97002 * 119.99970 * 4.62132 * 16 14 13 35 35 H 1.07997 * 120.01295 * 0.02562 * 18 17 16 36 36 H 1.07996 * 119.94580 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.93881 * 179.97438 * 20 19 18 38 38 H 1.08008 * 120.04708 * 180.27887 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1454 -2.2878 -3.6037 10 1 1.1659 -1.5867 -4.8161 11 1 3.1465 -0.1875 -4.8165 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5774 -1.4788 3.7811 16 7 1.4289 0.1449 4.7699 17 6 1.8453 -0.2740 6.0387 18 6 2.0628 -1.6228 6.2893 19 6 2.4731 -2.0344 7.5422 20 6 2.6685 -1.1056 8.5476 21 6 2.4527 0.2401 8.3019 22 9 2.6449 1.1455 9.2861 23 6 2.0416 0.6577 7.0486 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 0.7095 1.1617 -3.4844 31 1 3.1300 -0.7216 1.2490 32 1 1.6767 -1.7490 1.2492 33 1 0.9938 0.7578 2.3564 34 1 0.8173 0.8927 4.6826 35 1 1.9110 -2.3493 5.5049 36 1 2.6425 -3.0832 7.7364 37 1 2.9890 -1.4303 9.5266 38 1 1.8776 1.7076 6.8552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315656582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:04 Heat of formation + Delta-G solvation = -52.192924 kcal Electronic energy + Delta-G solvation = -21290.059204 eV Core-core repulsion = 17853.979912 eV Total energy + Delta-G solvation = -3436.079291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.01752 -40.52297 -38.57309 -36.54019 -34.61266 -33.41046 -31.05013 -30.70810 -29.29883 -25.78405 -25.69795 -24.97593 -23.01932 -22.74503 -20.72956 -18.93385 -18.51001 -18.03491 -16.45127 -16.27369 -15.88415 -15.69418 -15.65046 -15.13623 -14.75038 -14.52935 -13.87450 -13.76543 -13.42385 -12.96004 -12.92950 -12.48913 -12.25121 -12.10345 -11.49744 -11.45727 -11.25860 -10.93612 -10.69546 -10.49583 -10.37086 -10.24370 -9.87414 -9.69569 -9.39516 -8.95382 -8.84054 -8.62774 -8.42180 -8.13495 -6.06751 -4.16847 1.06167 1.09992 2.72309 3.24420 3.24709 3.33605 3.38296 3.64526 4.15804 4.33796 4.47814 4.66863 4.84489 5.07754 5.20475 5.26953 5.35692 5.80574 5.96920 6.05393 6.19326 6.27013 6.28104 6.40930 6.43920 6.69295 6.76016 6.80343 6.90335 6.93417 6.96352 7.10596 7.30815 7.50090 7.65472 7.95604 8.05392 8.19967 8.33944 8.73906 8.84606 9.49387 10.94806 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044037 B = 0.003111 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.675331 B = 8997.437555 C = 9326.774310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.148 3.852 13 N -0.724 5.724 14 C 0.697 3.303 15 O -0.579 6.579 16 N -0.692 5.692 17 C 0.206 3.794 18 C -0.131 4.131 19 C -0.073 4.073 20 C -0.178 4.178 21 C 0.114 3.886 22 F -0.141 7.141 23 C -0.190 4.190 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.396 0.604 34 H 0.407 0.593 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 0.313 17.458 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.026 3.974 13 N -0.378 5.378 14 C 0.397 3.603 15 O -0.457 6.457 16 N -0.340 5.340 17 C 0.109 3.891 18 C -0.152 4.152 19 C -0.092 4.092 20 C -0.198 4.198 21 C 0.095 3.905 22 F -0.120 7.120 23 C -0.212 4.212 24 H 0.024 0.976 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.243 0.757 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.433 -0.435 17.282 17.292 hybrid contribution -0.196 0.602 -0.782 1.007 sum -0.629 0.167 16.499 16.512 Atomic orbital electron populations 1.21834 0.97719 0.99228 1.00060 1.18376 0.92835 0.92802 0.90462 1.21832 0.98652 0.98312 1.00056 1.21013 1.31514 1.12159 0.89795 0.92285 1.24882 0.94819 0.94914 0.98903 1.69809 1.36692 1.22746 1.23190 0.86504 0.78651 0.79768 0.82909 1.19707 1.21049 1.21045 1.21694 0.98142 0.95540 0.82061 1.45566 1.54979 1.32894 1.04342 1.16042 0.80558 0.83117 0.80563 1.90894 1.42455 1.26810 1.85503 1.42730 1.50368 1.37437 1.03440 1.17208 0.95968 0.92321 0.83626 1.21513 1.01042 0.94946 0.97677 1.20923 0.96800 0.99639 0.91791 1.21080 1.06144 0.91313 1.01231 1.17294 1.01427 0.86639 0.85179 1.91493 1.92905 1.66883 1.60708 1.20762 1.07667 1.00195 0.92598 0.97592 0.89559 0.95365 0.95379 0.89556 0.97591 0.93023 0.92596 0.92582 0.76863 0.75732 0.83252 0.84751 0.84952 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -12.94 8.01 -34.44 -0.28 -13.21 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.13 9.35 55.43 0.52 -22.62 16 8 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.15 3.02 4.50 -4.04 -0.02 3.00 16 13 N -0.72 -12.12 4.96 -65.23 -0.32 -12.44 16 14 C 0.70 11.57 8.41 -86.93 -0.73 10.84 16 15 O -0.58 -11.53 13.78 5.29 0.07 -11.46 16 16 N -0.69 -8.77 5.34 -14.23 -0.08 -8.85 16 17 C 0.21 2.62 6.30 -83.70 -0.53 2.10 16 18 C -0.13 -1.72 8.69 -39.38 -0.34 -2.06 16 19 C -0.07 -0.77 10.04 -39.62 -0.40 -1.17 16 20 C -0.18 -1.81 10.02 -39.48 -0.40 -2.21 16 21 C 0.11 1.29 7.30 -39.45 -0.29 1.00 16 22 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 23 C -0.19 -2.14 9.94 -39.33 -0.39 -2.53 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.40 5.85 6.18 -40.82 -0.25 5.60 16 34 H 0.41 3.84 8.84 -40.82 -0.36 3.48 16 35 H 0.15 2.22 6.22 -52.49 -0.33 1.89 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -28.21 316.48 -7.74 -35.95 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.78 Total: 7.42 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.94 Total: -6.55 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.12 Total: -43.90 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.21 -7.74 -35.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315656582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.245 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds