Wall clock time and date at job start Tue Mar 31 2020 01:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47316 * 2 1 4 4 N 1.46503 * 109.47425 * 180.02562 * 3 2 1 5 5 C 1.37091 * 119.99649 * 269.99999 * 4 3 2 6 6 H 1.08008 * 119.99848 * 143.44222 * 5 4 3 7 7 C 1.38952 * 120.00494 * 323.43551 * 5 4 3 8 8 N 1.31410 * 119.99857 * 159.88048 * 7 5 4 9 9 Si 1.86805 * 119.99748 * 339.88232 * 7 5 4 10 10 H 1.48494 * 109.46858 * 95.40995 * 9 7 5 11 11 H 1.48498 * 109.46733 * 215.41099 * 9 7 5 12 12 H 1.48504 * 109.46697 * 335.40974 * 9 7 5 13 13 C 1.34772 * 120.00018 * 90.00076 * 4 3 2 14 14 O 1.21294 * 120.00187 * 354.66681 * 13 4 3 15 15 C 1.50706 * 120.00029 * 174.66733 * 13 4 3 16 16 N 1.46497 * 109.47024 * 185.36969 * 15 13 4 17 17 C 1.39666 * 120.00021 * 185.16949 * 16 15 13 18 18 C 1.38949 * 120.05835 * 354.35766 * 17 16 15 19 19 C 1.38099 * 119.97707 * 180.02562 * 18 17 16 20 20 C 1.38277 * 120.09505 * 359.97438 * 19 18 17 21 21 C 1.38497 * 120.12505 * 0.02562 * 20 19 18 22 22 F 1.35096 * 119.98706 * 179.97438 * 21 20 19 23 23 C 1.38344 * 120.02263 * 359.97438 * 21 20 19 24 24 H 1.08994 * 109.46789 * 299.99775 * 1 2 3 25 25 H 1.08995 * 109.47002 * 59.99946 * 1 2 3 26 26 H 1.08998 * 109.46962 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46852 * 240.00144 * 2 1 3 28 28 H 1.09000 * 109.47686 * 120.00627 * 2 1 3 29 29 H 1.08999 * 109.47341 * 59.99722 * 3 2 1 30 30 H 1.09003 * 109.46905 * 300.00214 * 3 2 1 31 31 H 0.97003 * 119.99347 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46583 * 65.37073 * 15 13 4 33 33 H 1.08999 * 109.47010 * 305.37046 * 15 13 4 34 34 H 0.97007 * 120.00453 * 5.16946 * 16 15 13 35 35 H 1.07997 * 120.01522 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.95510 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.93685 * 179.97438 * 20 19 18 38 38 H 1.08005 * 120.04848 * 180.27504 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.1117 0.8852 1.2779 7 6 3.7018 2.1590 2.2717 8 7 4.1032 1.8650 3.4879 9 14 2.4735 3.5403 2.0016 10 1 1.0951 3.0201 2.1870 11 1 2.7282 4.6274 2.9806 12 1 2.6211 4.0713 0.6226 13 6 4.1784 1.4427 -1.1681 14 8 3.5755 1.3452 -2.2160 15 6 5.6806 1.5640 -1.1715 16 7 6.1589 1.6683 -2.5523 17 6 7.5301 1.6821 -2.8171 18 6 8.4412 1.7152 -1.7686 19 6 9.7967 1.7293 -2.0324 20 6 10.2490 1.7100 -3.3390 21 6 9.3445 1.6769 -4.3872 22 9 9.7895 1.6586 -5.6627 23 6 7.9855 1.6627 -4.1287 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.7613 2.3651 4.2456 32 1 6.1173 0.6829 -0.7013 33 1 5.9744 2.4552 -0.6169 34 1 5.5233 1.7279 -3.2826 35 1 8.0895 1.7308 -0.7476 36 1 10.5045 1.7547 -1.2172 37 1 11.3096 1.7215 -3.5424 38 1 7.2798 1.6324 -4.9458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345798204.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:49 Heat of formation + Delta-G solvation = -50.303292 kcal Electronic energy + Delta-G solvation = -21438.352794 eV Core-core repulsion = 18002.355443 eV Total energy + Delta-G solvation = -3435.997351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.76715 -39.49013 -38.70977 -35.80911 -34.63055 -33.11407 -31.84269 -30.64124 -29.42715 -27.07919 -25.57755 -24.48199 -22.72376 -21.63544 -21.10767 -19.26220 -17.95308 -17.38807 -16.42192 -16.14198 -15.81696 -15.58359 -15.46029 -15.02654 -14.78832 -14.28919 -14.05362 -13.67574 -13.50994 -13.40641 -12.98390 -12.73946 -12.55083 -12.27971 -11.92644 -11.76230 -11.49099 -11.45420 -11.10640 -11.05332 -10.95752 -10.55994 -10.20531 -9.90719 -9.86002 -9.34423 -8.83783 -8.66215 -8.03012 -7.28032 -6.66311 -4.27900 1.38379 1.62176 2.91517 3.09664 3.15619 3.41956 3.52122 3.87383 3.96359 4.29495 4.53525 4.76440 4.95436 5.20405 5.33889 5.46646 5.53082 5.56701 5.58387 5.71275 5.83469 5.91881 5.97231 6.04848 6.11012 6.21793 6.27788 6.29901 6.35043 6.41487 6.58567 6.65863 6.79928 6.95986 7.16335 7.46304 7.84916 8.00708 8.04176 8.72991 9.11300 9.44254 10.43497 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.004214 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.216666 B = 6642.798911 C = 7434.790297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.103 3.897 4 N -0.454 5.454 5 C -0.354 4.354 6 H 0.107 0.893 7 C 0.071 3.929 8 N -0.852 5.852 9 Si 0.880 3.120 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.468 3.532 14 O -0.599 6.599 15 C 0.122 3.878 16 N -0.726 5.726 17 C 0.256 3.744 18 C -0.210 4.210 19 C -0.042 4.042 20 C -0.226 4.226 21 C 0.142 3.858 22 F -0.145 7.145 23 C -0.241 4.241 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.278 0.722 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.409 0.591 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 -0.009 -6.755 8.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.019 4.019 4 N -0.173 5.173 5 C -0.481 4.481 6 H 0.125 0.875 7 C -0.138 4.138 8 N -0.486 5.486 9 Si 0.708 3.292 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.257 3.743 14 O -0.485 6.485 15 C -0.005 4.005 16 N -0.354 5.354 17 C 0.148 3.852 18 C -0.233 4.233 19 C -0.061 4.061 20 C -0.247 4.247 21 C 0.122 3.878 22 F -0.124 7.124 23 C -0.265 4.265 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.247 0.753 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.211 -0.037 -6.845 8.037 hybrid contribution -0.812 0.705 -0.205 1.094 sum 3.399 0.668 -7.050 7.855 Atomic orbital electron populations 1.21712 0.96289 1.01201 1.01381 1.21752 0.94864 0.97682 1.02658 1.21695 0.82240 0.96998 1.01016 1.43686 1.04169 1.63888 1.05550 1.19120 1.10348 1.31910 0.86698 0.87532 1.25335 0.97034 0.96698 0.94694 1.69738 1.42649 1.37955 0.98220 0.86894 0.80860 0.82280 0.79139 1.19940 1.21379 1.18674 1.20180 0.89233 0.81135 0.83731 1.90538 1.69967 1.56236 1.31731 1.20935 0.93356 1.03441 0.82749 1.44687 1.02966 1.79093 1.08678 1.17526 0.84376 0.90960 0.92340 1.20860 0.92721 1.10924 0.98808 1.20710 0.94996 0.94791 0.95614 1.20775 0.99227 1.12520 0.92201 1.17324 0.92012 1.00175 0.78306 1.91460 1.90003 1.93840 1.37109 1.20407 0.94268 1.15493 0.96283 0.92996 0.93009 0.92902 0.91908 0.91138 0.91806 0.91315 0.91186 0.89591 0.89123 0.75303 0.84979 0.85306 0.85637 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.13 -2.45 6.26 -26.73 -0.17 -2.62 16 3 C 0.10 2.17 4.16 -4.04 -0.02 2.16 16 4 N -0.45 -10.18 2.21 -114.81 -0.25 -10.43 16 5 C -0.35 -8.48 9.02 -14.94 -0.13 -8.61 16 6 H 0.11 2.63 7.37 -52.48 -0.39 2.24 16 7 C 0.07 1.75 5.35 -17.47 -0.09 1.66 16 8 N -0.85 -21.99 13.96 55.50 0.77 -21.21 16 9 Si 0.88 19.37 24.83 -169.99 -4.22 15.15 16 10 H -0.27 -5.77 6.71 56.52 0.38 -5.40 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 13 C 0.47 10.06 7.68 -10.98 -0.08 9.98 16 14 O -0.60 -13.76 15.33 5.54 0.09 -13.67 16 15 C 0.12 2.21 4.11 -5.19 -0.02 2.19 16 16 N -0.73 -12.02 5.68 -59.81 -0.34 -12.36 16 17 C 0.26 3.89 6.64 -83.80 -0.56 3.33 16 18 C -0.21 -2.96 9.30 -39.37 -0.37 -3.32 16 19 C -0.04 -0.52 10.04 -39.62 -0.40 -0.91 16 20 C -0.23 -2.83 10.02 -39.47 -0.40 -3.22 16 21 C 0.14 1.98 7.30 -39.45 -0.29 1.69 16 22 F -0.15 -2.04 17.27 2.25 0.04 -2.00 16 23 C -0.24 -3.47 9.88 -39.32 -0.39 -3.86 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.06 1.37 2.96 -51.93 -0.15 1.22 16 30 H 0.07 1.44 7.50 -51.93 -0.39 1.05 16 31 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.09 1.51 7.57 -51.93 -0.39 1.12 16 33 H 0.09 1.63 7.87 -51.93 -0.41 1.22 16 34 H 0.41 6.94 7.50 -40.82 -0.31 6.63 16 35 H 0.13 1.82 6.76 -52.49 -0.35 1.46 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -26.32 320.58 -6.56 -32.88 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -4.93 Total: 10.26 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.54 Total: -3.43 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.18 Total: -44.01 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.22 Total: 15.15 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.32 -6.56 -32.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345798204.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.427 kcal (2) G-P(sol) polarization free energy of solvation -26.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds