Wall clock time and date at job start Tue Mar 31 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47386 * 2 1 4 4 N 1.46498 * 109.47130 * 184.55194 * 3 2 1 5 5 C 1.37102 * 119.99652 * 84.50138 * 4 3 2 6 6 H 1.08001 * 119.99493 * 199.65881 * 5 4 3 7 7 C 1.38946 * 120.00196 * 19.66381 * 5 4 3 8 8 N 1.31407 * 120.00092 * 42.50270 * 7 5 4 9 9 Si 1.86801 * 119.99919 * 222.50699 * 7 5 4 10 10 H 1.48501 * 109.46941 * 94.98854 * 9 7 5 11 11 H 1.48498 * 109.47077 * 214.99227 * 9 7 5 12 12 H 1.48504 * 109.47120 * 334.98989 * 9 7 5 13 13 C 1.34768 * 120.00267 * 264.50316 * 4 3 2 14 14 O 1.21287 * 120.00568 * 184.46695 * 13 4 3 15 15 C 1.50700 * 119.99830 * 4.46355 * 13 4 3 16 16 H 1.09002 * 109.47211 * 39.65701 * 15 13 4 17 17 C 1.53001 * 109.47242 * 279.65448 * 15 13 4 18 18 C 1.50706 * 109.47459 * 159.65638 * 15 13 4 19 19 N 1.31872 * 119.63337 * 59.97368 * 18 15 13 20 20 C 1.31843 * 121.74605 * 179.68340 * 19 18 15 21 21 C 1.38235 * 120.82267 * 0.63622 * 20 19 18 22 22 C 1.38594 * 119.18505 * 359.40444 * 21 20 19 23 23 C 1.38422 * 119.63534 * 240.00461 * 18 15 13 24 24 F 1.35100 * 120.44683 * 0.02562 * 23 18 15 25 25 H 1.09001 * 109.47134 * 300.00446 * 1 2 3 26 26 H 1.08997 * 109.46760 * 59.99915 * 1 2 3 27 27 H 1.08995 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47134 * 239.99554 * 2 1 3 29 29 H 1.09006 * 109.46995 * 119.99963 * 2 1 3 30 30 H 1.09002 * 109.47360 * 64.55163 * 3 2 1 31 31 H 1.09002 * 109.46584 * 304.55269 * 3 2 1 32 32 H 0.97000 * 119.99982 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46973 * 64.15916 * 17 15 13 34 34 H 1.09006 * 109.46939 * 184.15919 * 17 15 13 35 35 H 1.08991 * 109.47137 * 304.16149 * 17 15 13 36 36 H 1.08001 * 119.59018 * 180.33764 * 20 19 18 37 37 H 1.08003 * 120.40781 * 179.67637 * 21 20 19 38 38 H 1.08007 * 120.79475 * 180.30017 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5010 1.4439 -0.1096 5 6 4.0959 1.3621 -1.3421 6 1 5.1257 1.0472 -1.4247 7 6 3.3741 1.6843 -2.4848 8 7 2.5893 2.7382 -2.4908 9 14 3.5192 0.6190 -4.0125 10 1 2.4184 -0.3776 -4.0273 11 1 3.4288 1.4746 -5.2229 12 1 4.8258 -0.0866 -4.0016 13 6 4.2600 1.5255 1.0010 14 8 5.4664 1.6084 0.9064 15 6 3.6099 1.5140 2.3605 16 1 2.7877 0.7983 2.3640 17 6 3.0721 2.9101 2.6806 18 6 4.6261 1.1167 3.4000 19 7 5.7098 1.8495 3.5660 20 6 6.6225 1.5440 4.4670 21 6 6.4806 0.4265 5.2683 22 6 5.3556 -0.3699 5.1243 23 6 4.4120 -0.0138 4.1696 24 9 3.3003 -0.7611 3.9939 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.7449 1.9323 0.9280 31 1 1.6117 1.9793 -0.8464 32 1 2.0852 2.9629 -3.2885 33 1 2.2846 3.1673 1.9722 34 1 2.6680 2.9205 3.6929 35 1 3.8806 3.6371 2.6046 36 1 7.4943 2.1719 4.5772 37 1 7.2350 0.1796 6.0007 38 1 5.2159 -1.2463 5.7400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346231282.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:44 Heat of formation + Delta-G solvation = -58.657009 kcal Electronic energy + Delta-G solvation = -22653.533602 eV Core-core repulsion = 19217.174007 eV Total energy + Delta-G solvation = -3436.359595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.01473 -41.40311 -40.19820 -37.15768 -35.33364 -34.28032 -33.20797 -32.91418 -30.84253 -27.68053 -26.77096 -25.79878 -24.41498 -23.45320 -22.35991 -20.54053 -18.93811 -18.77161 -18.31988 -17.52848 -17.31650 -16.86231 -16.55380 -16.10905 -15.65028 -15.35641 -15.11888 -14.87310 -14.71451 -14.44447 -14.04636 -13.96153 -13.67248 -13.45672 -13.41245 -13.10180 -12.86338 -12.74517 -12.52462 -12.34785 -12.20780 -12.05903 -11.99673 -11.45302 -10.88441 -10.80098 -10.45868 -10.18879 -9.76964 -9.58373 -8.48054 -5.82706 -0.06556 0.21154 1.30207 1.40234 1.51340 2.01405 2.27376 2.64856 2.88925 2.99054 3.14623 3.33927 3.62189 3.78423 3.98075 4.02674 4.09646 4.21469 4.27771 4.36043 4.48847 4.57861 4.64269 4.72453 4.78609 4.88748 4.93842 4.96502 5.04391 5.11666 5.21175 5.28463 5.37815 5.50467 5.57399 5.69994 6.12793 6.51674 7.03833 7.21883 7.51443 8.13717 8.54570 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.005823 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.489001 B = 4807.012300 C = 5323.441647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.087 3.913 4 N -0.446 5.446 5 C -0.368 4.368 6 H 0.061 0.939 7 C 0.028 3.972 8 N -0.850 5.850 9 Si 0.952 3.048 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.278 1.278 13 C 0.443 3.557 14 O -0.616 6.616 15 C -0.054 4.054 16 H 0.106 0.894 17 C -0.122 4.122 18 C 0.103 3.897 19 N -0.463 5.463 20 C 0.074 3.926 21 C -0.133 4.133 22 C -0.106 4.106 23 C 0.029 3.971 24 F -0.134 7.134 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.277 0.723 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.183 0.817 37 H 0.191 0.809 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -5.572 14.962 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C -0.036 4.036 4 N -0.164 5.164 5 C -0.494 4.494 6 H 0.079 0.921 7 C -0.179 4.179 8 N -0.485 5.485 9 Si 0.775 3.225 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.203 1.203 13 C 0.232 3.768 14 O -0.502 6.502 15 C -0.076 4.076 16 H 0.124 0.876 17 C -0.180 4.180 18 C -0.036 4.036 19 N -0.171 5.171 20 C -0.084 4.084 21 C -0.152 4.152 22 C -0.132 4.132 23 C 0.008 3.992 24 F -0.113 7.113 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.200 0.800 37 H 0.208 0.792 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.219 -4.683 14.232 15.146 hybrid contribution -0.004 -1.039 -0.791 1.306 sum -2.223 -5.722 13.441 14.777 Atomic orbital electron populations 1.21638 0.93101 1.02478 1.02285 1.21812 0.97545 0.96709 1.00974 1.22012 0.80397 0.97606 1.03566 1.43865 1.05823 1.62147 1.04536 1.19160 0.99191 1.47941 0.83105 0.92093 1.25657 0.96650 0.94834 1.00716 1.70265 1.27905 1.18887 1.31489 0.85592 0.79054 0.79827 0.78026 1.18502 1.20016 1.20292 1.20539 0.87404 0.82546 0.86307 1.90484 1.16386 1.55985 1.87349 1.20126 0.96050 1.01338 0.90092 0.87596 1.21632 1.00755 0.92866 1.02737 1.20864 0.94554 0.92173 0.95970 1.67496 1.01023 1.31752 1.16870 1.23485 0.97666 0.96840 0.90381 1.22527 0.98097 0.93886 1.00667 1.22020 0.92670 1.01871 0.96628 1.18781 0.86915 0.92575 1.00965 1.91466 1.50127 1.74933 1.94788 0.91139 0.93178 0.91234 0.93890 0.92607 0.90382 0.89214 0.91250 0.91119 0.89495 0.93362 0.79966 0.79217 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.20 16 2 C -0.13 -4.96 6.16 30.60 0.19 -4.77 16 3 C 0.09 3.84 4.61 86.38 0.40 4.24 16 4 N -0.45 -23.86 2.63 -635.55 -1.67 -25.53 16 5 C -0.37 -21.78 9.07 84.04 0.76 -21.01 16 6 H 0.06 4.00 7.60 -2.91 -0.02 3.98 16 7 C 0.03 1.53 4.62 84.93 0.39 1.93 16 8 N -0.85 -45.84 11.67 21.66 0.25 -45.59 16 9 Si 0.95 42.45 29.69 68.60 2.04 44.48 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.44 23.46 6.78 87.66 0.59 24.06 16 14 O -0.62 -37.91 15.09 -3.05 -0.05 -37.96 16 15 C -0.05 -2.19 2.10 -12.28 -0.03 -2.22 16 16 H 0.11 3.95 5.42 -2.39 -0.01 3.94 16 17 C -0.12 -4.35 8.80 71.98 0.63 -3.72 16 18 C 0.10 3.94 5.20 42.60 0.22 4.16 16 19 N -0.46 -17.84 9.02 -183.71 -1.66 -19.50 16 20 C 0.07 2.02 11.18 84.69 0.95 2.97 16 21 C -0.13 -2.59 10.11 22.35 0.23 -2.37 16 22 C -0.11 -2.34 10.16 22.51 0.23 -2.11 16 23 C 0.03 0.91 7.28 22.47 0.16 1.08 16 24 F -0.13 -4.14 16.21 44.97 0.73 -3.42 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.01 7.34 -2.38 -0.02 1.99 16 30 H 0.08 3.02 4.45 -2.39 -0.01 3.01 16 31 H 0.09 4.33 5.38 -2.39 -0.01 4.32 16 32 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.07 2.45 6.11 -2.39 -0.01 2.43 16 34 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 36 H 0.18 3.81 8.06 -2.91 -0.02 3.78 16 37 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -76.31 319.21 6.16 -70.15 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 1.07 Total: 18.33 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.44 Total: -0.97 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -3.07 Total: -90.62 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.05 Total: -37.96 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.73 Total: -3.42 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.04 Total: 44.48 kcal Total: -76.31 6.16 -70.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346231282.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.492 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds