Wall clock time and date at job start Tue Mar 31 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.52995 * 109.47162 * 239.99942 * 2 1 3 5 5 F 1.39901 * 109.47294 * 60.00087 * 4 2 1 6 6 N 1.46500 * 109.47147 * 120.00177 * 2 1 3 7 7 C 1.34787 * 119.99847 * 299.99834 * 6 2 1 8 8 O 1.21576 * 119.99880 * 0.02562 * 7 6 2 9 9 N 1.34771 * 119.99713 * 180.02562 * 7 6 2 10 10 C 1.39242 * 119.99554 * 184.29420 * 9 7 6 11 11 C 1.39483 * 119.83450 * 324.70061 * 10 9 7 12 12 C 1.36374 * 120.16935 * 180.26053 * 11 10 9 13 13 C 1.40865 * 119.82738 * 359.49718 * 12 11 10 14 14 C 1.41159 * 120.16406 * 180.23468 * 13 12 11 15 15 H 1.08002 * 120.00173 * 215.04368 * 14 13 12 16 16 C 1.39897 * 120.00121 * 35.03407 * 14 13 12 17 17 N 1.30874 * 119.99674 * 355.54985 * 16 14 13 18 18 Si 1.86798 * 119.99951 * 175.54594 * 16 14 13 19 19 H 1.48499 * 109.47076 * 90.00602 * 18 16 14 20 20 H 1.48506 * 109.46778 * 210.00445 * 18 16 14 21 21 H 1.48496 * 109.47072 * 330.00160 * 18 16 14 22 22 C 1.40874 * 119.67483 * 0.52187 * 13 12 11 23 23 C 1.36371 * 119.82530 * 359.73229 * 22 13 12 24 24 H 1.09002 * 109.47148 * 300.00222 * 1 2 3 25 25 H 1.09003 * 109.47177 * 59.99798 * 1 2 3 26 26 H 1.08996 * 109.47295 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46931 * 179.97438 * 3 2 1 28 28 H 1.08990 * 109.47054 * 299.99951 * 3 2 1 29 29 H 1.09001 * 109.46847 * 60.00503 * 3 2 1 30 30 H 1.09007 * 109.47067 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47276 * 299.99811 * 4 2 1 32 32 H 0.96993 * 120.00281 * 120.00298 * 6 2 1 33 33 H 0.96998 * 120.00555 * 4.28661 * 9 7 6 34 34 H 1.08004 * 119.91370 * 359.97438 * 11 10 9 35 35 H 1.08002 * 120.08477 * 179.74896 * 12 11 10 36 36 H 0.97003 * 120.00124 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.08758 * 179.70836 * 22 13 12 38 38 H 1.07996 * 119.91567 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 9 1.5737 -0.0618 -2.3915 6 7 2.0183 -0.6906 1.1961 7 6 1.6927 -0.2301 2.4203 8 8 0.9934 0.7581 2.5319 9 7 2.1424 -0.8652 3.5207 10 6 1.7339 -0.4439 4.7834 11 6 1.5271 0.9135 5.0288 12 6 1.1321 1.3343 6.2644 13 6 0.9228 0.3930 7.2913 14 6 0.5091 0.8202 8.5715 15 1 0.8632 0.3061 9.4529 16 6 -0.3593 1.9096 8.6987 17 7 -0.7191 2.5868 7.6382 18 14 -1.0052 2.3975 10.3822 19 1 -0.0802 3.3805 11.0014 20 1 -2.3515 3.0074 10.2380 21 1 -1.0974 1.1926 11.2452 22 6 1.1341 -0.9762 7.0360 23 6 1.5341 -1.3813 5.7968 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8901 30 1 3.1301 -0.7216 -1.2489 31 1 1.6767 -1.7489 -1.2492 32 1 2.5760 -1.4792 1.1072 33 1 2.7505 -1.6158 3.4331 34 1 1.6846 1.6337 4.2394 35 1 0.9763 2.3860 6.4540 36 1 -1.3215 3.3420 7.7263 37 1 0.9802 -1.7031 7.8198 38 1 1.6970 -2.4305 5.5997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352324051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:23 Heat of formation + Delta-G solvation = -59.416541 kcal Electronic energy + Delta-G solvation = -21599.360210 eV Core-core repulsion = 18162.967679 eV Total energy + Delta-G solvation = -3436.392531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.92454 -40.18760 -37.80787 -36.13663 -34.30231 -33.01812 -31.32066 -29.44780 -28.63682 -27.26232 -27.10943 -24.87074 -21.97959 -21.18660 -20.17972 -19.65458 -18.07934 -17.25796 -17.00263 -16.16954 -16.04342 -15.24426 -15.18773 -14.86407 -14.37066 -13.93808 -13.81161 -13.42505 -12.98451 -12.89506 -12.65627 -12.20977 -11.95560 -11.92682 -11.68310 -11.41620 -11.37850 -11.18513 -11.09076 -10.90513 -10.83058 -10.45991 -9.89112 -9.83644 -9.46660 -9.07824 -8.92467 -8.71304 -7.47985 -6.83196 -6.55297 -4.29085 2.68936 2.90843 3.08502 3.13022 3.14468 3.20913 3.69820 4.02006 4.22676 4.47207 4.53044 4.69160 4.76770 4.92791 5.25742 5.33196 5.67657 5.73431 5.76117 5.86125 5.91472 6.15556 6.36744 6.40606 6.43449 6.63966 6.81480 6.88905 7.08471 7.18893 7.31709 7.41152 7.68853 7.85926 8.05895 8.13491 8.33807 8.48983 8.71825 8.97265 8.97927 9.12995 10.35808 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036265 B = 0.003515 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.911441 B = 7963.104319 C = 8454.688194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 C -0.166 4.166 4 C 0.064 3.936 5 F -0.205 7.205 6 N -0.747 5.747 7 C 0.699 3.301 8 O -0.565 6.565 9 N -0.668 5.668 10 C 0.024 3.976 11 C -0.093 4.093 12 C -0.143 4.143 13 C 0.099 3.901 14 C -0.465 4.465 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.809 5.809 18 Si 0.914 3.086 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.204 4.204 23 C -0.116 4.116 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.390 0.610 33 H 0.390 0.610 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.278 0.722 37 H 0.096 0.904 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 -6.305 -13.474 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.078 3.922 3 C -0.224 4.224 4 C 0.008 3.992 5 F -0.186 7.186 6 N -0.404 5.404 7 C 0.400 3.600 8 O -0.441 6.441 9 N -0.314 5.314 10 C -0.068 4.068 11 C -0.113 4.113 12 C -0.163 4.163 13 C 0.096 3.904 14 C -0.496 4.496 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.436 5.436 18 Si 0.739 3.261 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.224 4.224 23 C -0.137 4.137 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.224 0.776 33 H 0.223 0.777 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.946 -5.162 -13.478 15.257 hybrid contribution 0.120 -0.650 0.508 0.834 sum 5.067 -5.812 -12.970 15.088 Atomic orbital electron populations 1.22260 0.93435 1.02396 1.04376 1.20563 0.95473 0.93135 0.83047 1.22257 1.00683 0.95128 1.04372 1.22088 0.99765 0.95794 0.81538 1.92770 1.90772 1.83374 1.51732 1.45070 1.57876 1.33271 1.04204 1.15914 0.80525 0.83641 0.79892 1.90878 1.41832 1.26460 1.84974 1.42124 1.49385 1.35787 1.04120 1.17079 1.13605 0.93271 0.82891 1.20666 1.00415 0.93174 0.97079 1.21303 1.01914 1.00753 0.92343 1.17714 0.88548 0.90357 0.93758 1.19461 1.24850 1.11874 0.93383 0.90738 1.25874 0.95637 0.94844 0.98232 1.69792 1.27958 1.15985 1.29826 0.86222 0.78451 0.79324 0.82090 1.19572 1.20340 1.18812 1.20671 1.10286 0.95807 0.95595 1.20045 1.03629 0.95871 0.94149 0.89153 0.91659 0.92827 0.92826 0.91635 0.89207 0.90311 0.90308 0.77628 0.77717 0.87304 0.85276 0.91141 0.88613 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 8.28 37.16 0.31 -1.87 16 2 C 0.17 1.90 0.91 -131.82 -0.12 1.78 16 3 C -0.17 -2.11 8.28 37.16 0.31 -1.80 16 4 C 0.06 0.54 6.48 37.15 0.24 0.78 16 5 F -0.21 -2.18 16.32 2.25 0.04 -2.14 16 6 N -0.75 -8.88 5.11 -52.42 -0.27 -9.14 16 7 C 0.70 11.93 7.81 -86.91 -0.68 11.25 16 8 O -0.57 -12.02 9.96 5.30 0.05 -11.97 16 9 N -0.67 -11.36 5.31 -14.10 -0.07 -11.44 16 10 C 0.02 0.53 6.31 -83.57 -0.53 0.00 16 11 C -0.09 -2.31 8.61 -39.79 -0.34 -2.65 16 12 C -0.14 -3.85 8.61 -39.26 -0.34 -4.18 16 13 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 14 C -0.46 -12.48 9.02 -37.85 -0.34 -12.82 16 15 H 0.07 1.91 7.85 -52.49 -0.41 1.49 16 16 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 17 N -0.81 -21.75 10.61 55.55 0.59 -21.16 16 18 Si 0.91 19.27 29.56 -169.99 -5.03 14.25 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.20 -4.91 9.74 -39.26 -0.38 -5.30 16 23 C -0.12 -2.52 9.90 -39.79 -0.39 -2.92 16 24 H 0.09 1.51 6.16 -51.93 -0.32 1.19 16 25 H 0.06 0.78 7.80 -51.93 -0.41 0.37 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.76 7.80 -51.93 -0.41 0.36 16 29 H 0.09 1.44 6.16 -51.93 -0.32 1.12 16 30 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.39 3.21 8.49 -40.82 -0.35 2.87 16 33 H 0.39 5.02 8.83 -40.82 -0.36 4.66 16 34 H 0.11 2.72 6.22 -52.48 -0.33 2.39 16 35 H 0.13 3.65 6.15 -52.49 -0.32 3.32 16 36 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 37 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -30.83 315.57 -7.78 -38.61 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -4.89 Total: 12.21 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.96 Total: -13.97 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.25 Total: -41.74 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.05 Total: -11.97 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.83 -7.78 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352324051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.803 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds