Wall clock time and date at job start Tue Mar 31 2020 02:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.47249 * 180.02562 * 16 14 12 18 18 C 1.39665 * 120.00382 * 180.02562 * 17 16 14 19 19 C 1.38953 * 120.06331 * 359.72602 * 18 17 16 20 20 C 1.38086 * 119.97479 * 179.70189 * 19 18 17 21 21 C 1.38268 * 120.10382 * 0.59285 * 20 19 18 22 22 C 1.38496 * 120.12229 * 359.68232 * 21 20 19 23 23 F 1.35096 * 119.99034 * 180.02562 * 22 21 20 24 24 C 1.38349 * 120.02050 * 0.02562 * 22 21 20 25 25 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 26 26 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 27 27 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 28 28 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 30 30 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 31 31 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 32 32 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 33 33 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 34 34 H 0.97004 * 119.99773 * 0.02562 * 17 16 14 35 35 H 1.08004 * 120.00785 * 359.97292 * 19 18 17 36 36 H 1.08009 * 119.94915 * 180.27496 * 20 19 18 37 37 H 1.07995 * 119.94341 * 179.70186 * 21 20 19 38 38 H 1.07998 * 120.04755 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 7 4.1103 0.1744 -4.1106 18 6 4.6885 -0.2603 -5.3054 19 6 4.4969 -1.5674 -5.7363 20 6 5.0642 -1.9934 -6.9210 21 6 5.8331 -1.1248 -7.6734 22 6 6.0315 0.1772 -7.2450 23 9 6.7829 1.0237 -7.9826 24 6 5.4605 0.6112 -6.0620 25 1 -0.3634 0.5974 0.8361 26 1 -0.3633 0.4254 -0.9355 27 1 -0.3634 -1.0229 0.0993 28 1 2.9613 -0.1040 4.2479 29 1 0.7377 -2.1445 -1.9992 30 1 2.4630 -2.5819 -1.9862 31 1 1.5296 -2.5969 -0.4706 32 1 3.9019 -1.6023 -3.0164 33 1 2.4486 -1.0893 -3.9068 34 1 4.2480 1.0859 -3.8087 35 1 3.9008 -2.2485 -5.1470 36 1 4.9114 -3.0082 -7.2577 37 1 6.2796 -1.4622 -8.5971 38 1 5.6146 1.6265 -5.7277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353781753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:59 Heat of formation + Delta-G solvation = -50.210960 kcal Electronic energy + Delta-G solvation = -21282.055280 eV Core-core repulsion = 17846.061933 eV Total energy + Delta-G solvation = -3435.993347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -48.95645 -39.83588 -38.95667 -35.89311 -34.99694 -32.83588 -31.14406 -30.55520 -29.46619 -26.71642 -26.21781 -25.32533 -23.02875 -22.07138 -20.86570 -18.70724 -18.09469 -17.31424 -16.82979 -16.25376 -16.20881 -15.71229 -15.63042 -15.44073 -14.82846 -14.58962 -14.00066 -13.79408 -13.59390 -13.05947 -12.84248 -12.70673 -12.51136 -12.42073 -12.14595 -11.93364 -11.74291 -11.49096 -11.33345 -11.16214 -10.80186 -10.55146 -10.23966 -9.87450 -9.44588 -9.26748 -8.90556 -8.70632 -7.87292 -7.60388 -6.25740 -4.29137 1.13307 1.36336 3.01703 3.07634 3.25780 3.32125 3.38370 3.61240 3.77211 4.29689 4.30275 4.69045 4.76806 4.98610 5.02265 5.14279 5.22708 5.30030 5.32853 5.41353 5.57642 5.82477 5.84577 6.03907 6.14215 6.15114 6.22419 6.29259 6.30681 6.46950 6.67379 6.80982 6.93137 7.14385 7.32210 7.50704 7.64009 7.96566 8.35949 8.65388 8.75409 9.35957 10.85882 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.003582 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.933423 B = 7815.527979 C = 8270.647908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.223 3.777 3 H 0.064 0.936 4 C -0.529 4.529 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.264 1.264 11 H -0.287 1.287 12 N -0.582 5.582 13 C 0.077 3.923 14 C 0.498 3.502 15 O -0.554 6.554 16 C 0.104 3.896 17 N -0.726 5.726 18 C 0.253 3.747 19 C -0.213 4.213 20 C -0.042 4.042 21 C -0.222 4.222 22 C 0.145 3.855 23 F -0.142 7.142 24 C -0.236 4.236 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.268 0.732 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.413 0.587 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 -3.726 -18.601 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.188 1.188 11 H -0.213 1.213 12 N -0.313 5.313 13 C -0.066 4.066 14 C 0.285 3.715 15 O -0.434 6.434 16 C -0.024 4.024 17 N -0.356 5.356 18 C 0.147 3.853 19 C -0.236 4.236 20 C -0.061 4.061 21 C -0.243 4.243 22 C 0.125 3.875 23 F -0.121 7.121 24 C -0.260 4.260 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.252 0.748 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.424 -3.200 -18.140 18.475 hybrid contribution 0.184 1.288 0.207 1.318 sum 1.607 -1.912 -17.934 18.107 Atomic orbital electron populations 1.22218 0.98093 1.01049 0.99187 1.19347 0.90908 0.94905 0.82595 0.91778 1.21098 1.45065 0.95710 0.94790 0.90267 1.24960 0.93600 0.98578 0.95249 1.69881 1.44348 1.36187 1.02144 0.86886 0.79870 0.85929 0.77102 1.19637 1.18829 1.21267 1.48326 1.48435 1.11836 1.22659 1.21721 0.99122 0.82777 1.03002 1.20287 0.79653 0.87236 0.84368 1.90639 1.58730 1.17252 1.76738 1.21200 0.95959 0.93320 0.91916 1.44551 1.54337 1.15665 1.21069 1.17494 0.90036 0.92385 0.85417 1.20743 1.08084 0.94927 0.99844 1.20701 0.93632 0.98889 0.92835 1.20825 1.07071 0.92861 1.03544 1.17339 0.92271 0.87889 0.89958 1.91480 1.73902 1.70630 1.76090 1.20448 1.06796 1.01527 0.97229 0.92502 0.95489 0.93024 0.92259 0.93387 0.92338 0.89555 0.89168 0.89414 0.74780 0.85409 0.85199 0.85395 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.09 37.16 0.34 -2.60 16 2 C 0.22 5.10 2.27 -69.08 -0.16 4.94 16 3 H 0.06 1.63 4.11 -51.93 -0.21 1.41 16 4 C -0.53 -13.94 8.72 -34.44 -0.30 -14.24 16 5 H 0.08 2.20 6.82 -52.49 -0.36 1.84 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 8 Si 0.88 21.64 26.91 -169.99 -4.57 17.06 16 9 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 10 H -0.26 -6.27 6.73 56.52 0.38 -5.89 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.58 -11.09 2.75 -175.26 -0.48 -11.58 16 13 C 0.08 1.11 9.40 59.85 0.56 1.68 16 14 C 0.50 9.21 7.74 -10.99 -0.09 9.12 16 15 O -0.55 -12.33 14.99 5.56 0.08 -12.24 16 16 C 0.10 1.37 3.94 -5.20 -0.02 1.35 16 17 N -0.73 -9.83 5.70 -59.82 -0.34 -10.18 16 18 C 0.25 3.12 6.65 -83.80 -0.56 2.56 16 19 C -0.21 -2.24 9.31 -39.37 -0.37 -2.61 16 20 C -0.04 -0.39 10.04 -39.63 -0.40 -0.79 16 21 C -0.22 -2.27 10.02 -39.48 -0.40 -2.66 16 22 C 0.15 1.74 7.30 -39.45 -0.29 1.45 16 23 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 24 C -0.24 -2.91 9.87 -39.31 -0.39 -3.29 16 25 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 31 H 0.09 1.39 6.56 -51.93 -0.34 1.05 16 32 H 0.09 1.07 7.20 -51.93 -0.37 0.69 16 33 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 34 H 0.41 6.10 7.45 -40.82 -0.30 5.80 16 35 H 0.13 1.13 6.73 -52.48 -0.35 0.78 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 320.20 15.07 4.83 4.83 Total: -1.00 -31.19 320.20 -6.61 -37.80 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.78 Total: 4.27 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.15 Total: -2.94 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.05 Total: -47.05 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.57 Total: 17.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.19 -6.61 -37.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353781753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.407 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds