Wall clock time and date at job start Tue Mar 31 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.46960 * 180.02562 * 16 14 12 18 18 C 1.39676 * 120.00181 * 179.97438 * 17 16 14 19 19 C 1.38946 * 120.05821 * 359.73067 * 18 17 16 20 20 C 1.38095 * 119.97222 * 179.69383 * 19 18 17 21 21 C 1.38273 * 120.10036 * 0.59840 * 20 19 18 22 22 C 1.38495 * 120.11904 * 359.67725 * 21 20 19 23 23 F 1.35107 * 119.98463 * 180.02562 * 22 21 20 24 24 C 1.38346 * 120.02812 * 0.02562 * 22 21 20 25 25 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 26 26 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 27 27 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 28 28 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 29 29 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 30 30 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 31 31 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 32 32 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 33 33 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 34 34 H 0.97000 * 120.00055 * 0.02562 * 17 16 14 35 35 H 1.07996 * 120.01601 * 359.97438 * 19 18 17 36 36 H 1.08002 * 119.95095 * 180.27286 * 20 19 18 37 37 H 1.07994 * 119.94185 * 179.69290 * 21 20 19 38 38 H 1.08003 * 120.05059 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 7 4.1086 0.1751 4.1117 18 6 4.6857 -0.2592 5.3072 19 6 4.4845 -1.5628 5.7439 20 6 5.0611 -1.9922 6.9229 21 6 5.8287 -1.1231 7.6762 22 6 6.0272 0.1788 7.2476 23 9 6.7781 1.0255 7.9856 24 6 5.4570 0.6126 6.0641 25 1 -0.3634 0.4199 -0.9379 26 1 -0.3633 -1.0222 0.1053 27 1 -0.3633 0.6023 0.8326 28 1 2.2553 -1.8357 -3.4698 29 1 2.4157 -2.7377 0.9717 30 1 1.6237 -2.2852 2.5002 31 1 0.6904 -2.3002 0.9847 32 1 2.4470 -1.0880 3.9073 33 1 3.9004 -1.6025 3.0178 34 1 4.2458 1.0867 3.8100 35 1 3.8810 -2.2413 5.1592 36 1 4.9081 -3.0069 7.2598 37 1 6.2743 -1.4602 8.6004 38 1 5.6119 1.6276 5.7293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353781763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:11 Heat of formation + Delta-G solvation = -48.941188 kcal Electronic energy + Delta-G solvation = -21241.361564 eV Core-core repulsion = 17805.423279 eV Total energy + Delta-G solvation = -3435.938285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.97911 -39.88358 -38.99871 -35.95811 -35.04509 -32.97590 -31.12463 -30.49861 -29.47478 -26.75914 -26.32704 -24.79715 -23.05823 -22.09104 -20.86724 -18.74219 -18.09244 -17.60693 -16.94284 -16.41842 -16.23081 -15.76463 -15.58589 -15.54903 -14.83970 -14.50826 -13.95671 -13.82859 -13.59082 -13.09730 -12.90715 -12.84334 -12.77899 -12.21369 -12.18610 -11.82012 -11.75518 -11.59093 -11.39082 -11.36251 -10.55617 -10.27844 -10.07157 -9.83344 -9.41474 -9.15789 -8.93526 -8.42654 -7.95538 -7.64177 -6.57695 -4.22938 1.10268 1.33179 2.96060 3.04176 3.31505 3.42745 3.54908 3.58129 3.73904 4.26763 4.38315 4.66052 4.72078 4.95798 4.98725 5.12175 5.16145 5.27885 5.29653 5.37578 5.47881 5.80394 5.82056 6.00780 6.05189 6.11193 6.25953 6.27590 6.31064 6.48167 6.64060 6.83844 6.96281 7.12875 7.26352 7.59850 7.72265 8.11407 8.24013 8.54351 8.78872 9.45904 10.80512 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.003374 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.551587 B = 8297.807690 C = 8696.394848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.234 3.766 3 H 0.056 0.944 4 C -0.613 4.613 5 H 0.061 0.939 6 C 0.037 3.963 7 N -0.899 5.899 8 Si 1.040 2.960 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.279 1.279 12 N -0.581 5.581 13 C 0.083 3.917 14 C 0.499 3.501 15 O -0.551 6.551 16 C 0.105 3.895 17 N -0.726 5.726 18 C 0.253 3.747 19 C -0.213 4.213 20 C -0.042 4.042 21 C -0.221 4.221 22 C 0.146 3.854 23 F -0.142 7.142 24 C -0.236 4.236 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.026 0.974 28 H 0.268 0.732 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -3.203 19.376 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.132 3.868 3 H 0.073 0.927 4 C -0.651 4.651 5 H 0.079 0.921 6 C -0.169 4.169 7 N -0.532 5.532 8 Si 0.868 3.132 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.205 1.205 12 N -0.311 5.311 13 C -0.060 4.060 14 C 0.285 3.715 15 O -0.430 6.430 16 C -0.023 4.023 17 N -0.356 5.356 18 C 0.146 3.854 19 C -0.236 4.236 20 C -0.061 4.061 21 C -0.242 4.242 22 C 0.126 3.874 23 F -0.121 7.121 24 C -0.259 4.259 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.253 0.747 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.138 -1.559 18.001 18.194 hybrid contribution 0.678 -0.939 1.030 1.550 sum 2.816 -2.498 19.031 19.400 Atomic orbital electron populations 1.22527 0.98499 1.00417 1.00570 1.19247 0.90514 0.94738 0.82263 0.92670 1.22146 1.41422 1.10583 0.90979 0.92108 1.25688 0.94495 1.04948 0.91815 1.70875 1.41053 1.10025 1.31286 0.84111 0.77433 0.75353 0.76298 1.20852 1.19933 1.20468 1.47937 1.48453 1.11906 1.22841 1.21650 1.02232 0.82578 0.99562 1.20244 0.79607 0.87242 0.84427 1.90643 1.58533 1.17088 1.76737 1.21180 0.95909 0.93317 0.91926 1.44539 1.54447 1.15625 1.21037 1.17490 0.90078 0.92404 0.85387 1.20739 1.07872 0.95037 0.99977 1.20705 0.93598 0.98881 0.92871 1.20831 1.07116 0.92832 1.03470 1.17340 0.92265 0.87883 0.89941 1.91486 1.73905 1.70610 1.76070 1.20448 1.06805 1.01510 0.97176 0.91413 0.93256 0.95443 0.92163 0.92705 0.92547 0.90420 0.89391 0.89276 0.74750 0.85460 0.85192 0.85363 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.96 37.16 0.33 -3.02 16 2 C 0.23 5.42 2.22 -69.08 -0.15 5.27 16 3 H 0.06 1.41 5.56 -51.93 -0.29 1.12 16 4 C -0.61 -16.39 8.68 -34.44 -0.30 -16.69 16 5 H 0.06 1.73 7.75 -52.48 -0.41 1.32 16 6 C 0.04 1.03 5.30 -17.82 -0.09 0.93 16 7 N -0.90 -26.60 13.70 55.43 0.76 -25.84 16 8 Si 1.04 24.79 26.29 -169.99 -4.47 20.32 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.27 -5.94 5.74 56.52 0.32 -5.61 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.58 -11.18 2.75 -175.26 -0.48 -11.67 16 13 C 0.08 1.24 9.43 59.85 0.56 1.80 16 14 C 0.50 9.16 7.74 -10.99 -0.09 9.07 16 15 O -0.55 -12.09 14.99 5.56 0.08 -12.01 16 16 C 0.10 1.37 3.94 -5.20 -0.02 1.35 16 17 N -0.73 -9.66 5.70 -59.82 -0.34 -10.00 16 18 C 0.25 3.06 6.65 -83.80 -0.56 2.51 16 19 C -0.21 -2.21 9.31 -39.37 -0.37 -2.58 16 20 C -0.04 -0.38 10.04 -39.62 -0.40 -0.78 16 21 C -0.22 -2.22 10.02 -39.47 -0.40 -2.62 16 22 C 0.15 1.71 7.30 -39.45 -0.29 1.42 16 23 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 24 C -0.24 -2.84 9.87 -39.32 -0.39 -3.23 16 25 H 0.07 1.47 4.85 -51.93 -0.25 1.22 16 26 H 0.05 0.94 6.45 -51.93 -0.33 0.61 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.27 7.87 8.73 -40.82 -0.36 7.51 16 29 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.06 0.60 6.44 -51.93 -0.33 0.26 16 31 H 0.08 1.17 6.33 -51.93 -0.33 0.84 16 32 H 0.09 0.94 7.20 -51.93 -0.37 0.57 16 33 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 34 H 0.41 5.98 7.45 -40.82 -0.30 5.67 16 35 H 0.13 1.12 6.73 -52.49 -0.35 0.76 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 315.91 15.07 4.76 4.76 Total: -1.00 -31.21 315.91 -6.53 -37.74 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.73 Total: 4.97 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.15 Total: -6.57 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.06 Total: -47.51 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -4.47 Total: 20.32 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.21 -6.53 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353781763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.205 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds