Wall clock time and date at job start Tue Mar 31 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47010 * 2 1 4 4 C 1.36939 * 119.99837 * 274.98456 * 3 2 1 5 5 H 1.07996 * 119.99844 * 24.10620 * 4 3 2 6 6 C 1.38809 * 119.99417 * 204.10928 * 4 3 2 7 7 N 1.31613 * 120.00789 * 5.04233 * 6 4 3 8 8 Si 1.86801 * 119.99546 * 185.04247 * 6 4 3 9 9 H 1.48505 * 109.47015 * 59.99971 * 8 6 4 10 10 H 1.48503 * 109.47421 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47507 * 300.00188 * 8 6 4 12 12 C 1.46497 * 119.99980 * 94.98000 * 3 2 1 13 13 C 1.50703 * 109.46862 * 90.00029 * 12 3 2 14 14 O 1.21284 * 120.00093 * 359.97438 * 13 12 3 15 15 N 1.34774 * 119.99856 * 179.97438 * 13 12 3 16 16 C 1.40047 * 120.00136 * 185.83702 * 15 13 12 17 17 C 1.38807 * 120.07775 * 24.68492 * 16 15 13 18 18 C 1.38143 * 119.95547 * 179.97438 * 17 16 15 19 19 C 1.38284 * 120.10920 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.91853 * 179.97438 * 19 18 17 21 21 C 1.38265 * 120.15867 * 359.75571 * 19 18 17 22 22 C 1.38313 * 120.04336 * 0.50053 * 21 19 18 23 23 F 1.35102 * 120.05565 * 179.77121 * 22 21 19 24 24 H 1.08992 * 109.47100 * 60.00085 * 1 2 3 25 25 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46792 * 299.99717 * 1 2 3 27 27 H 1.08996 * 109.47229 * 239.99683 * 2 1 3 28 28 H 1.09006 * 109.47204 * 119.99903 * 2 1 3 29 29 H 0.96998 * 120.00335 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47657 * 330.00196 * 12 3 2 31 31 H 1.08999 * 109.47311 * 209.99668 * 12 3 2 32 32 H 0.97008 * 120.00232 * 5.83328 * 15 13 12 33 33 H 1.08003 * 120.02336 * 359.97438 * 17 16 15 34 34 H 1.07993 * 119.94880 * 180.02562 * 18 17 16 35 35 H 1.08994 * 109.46976 * 90.00606 * 20 19 18 36 36 H 1.09005 * 109.47177 * 210.00351 * 20 19 18 37 37 H 1.08993 * 109.47503 * 330.00287 * 20 19 18 38 38 H 1.08000 * 119.98011 * 180.27367 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1494 2.0611 -1.1815 5 1 1.5609 1.7713 -2.0394 6 6 3.0388 3.1226 -1.2763 7 7 3.8273 3.4132 -0.2633 8 14 3.1164 4.1389 -2.8417 9 1 1.7907 4.7577 -3.0965 10 1 4.1387 5.2053 -2.6895 11 1 3.4811 3.2623 -3.9835 12 6 2.3663 2.0351 1.2639 13 6 3.8202 1.7875 1.5739 14 8 4.4987 1.1292 0.8141 15 7 4.3664 2.2976 2.6955 16 6 5.7425 2.1726 2.9236 17 6 6.6132 2.0126 1.8545 18 6 7.9702 1.8901 2.0825 19 6 8.4628 1.9270 3.3741 20 6 9.9439 1.7923 3.6179 21 6 7.6002 2.0917 4.4421 22 6 6.2399 2.2097 4.2216 23 9 5.3963 2.3660 5.2653 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.4490 4.1548 -0.3298 30 1 1.7496 1.6284 2.0654 31 1 2.1906 3.1075 1.1787 32 1 3.8064 2.7514 3.3447 33 1 6.2301 1.9840 0.8452 34 1 8.6476 1.7660 1.2506 35 1 10.4050 2.7798 3.6079 36 1 10.1113 1.3229 4.5873 37 1 10.3865 1.1767 2.8349 38 1 7.9885 2.1245 5.4493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355663221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:21 Heat of formation + Delta-G solvation = -27.665350 kcal Electronic energy + Delta-G solvation = -22269.159816 eV Core-core repulsion = 18834.144120 eV Total energy + Delta-G solvation = -3435.015696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.51680 -39.50539 -37.86123 -35.63615 -33.91077 -31.88748 -31.18944 -30.12215 -29.27460 -27.18793 -25.56416 -23.62566 -22.65308 -21.43960 -20.53261 -19.37456 -17.60212 -16.71510 -16.32689 -16.15970 -15.50745 -15.18900 -14.87954 -14.11887 -13.88338 -13.74817 -13.50292 -13.38833 -13.29744 -12.96886 -12.78922 -12.41249 -11.92065 -11.75548 -11.59100 -11.42661 -11.26542 -11.01880 -10.93575 -10.84624 -10.51545 -10.29187 -9.97134 -9.85433 -9.53804 -8.79017 -8.49774 -8.25937 -7.28424 -6.81455 -5.87900 -3.28414 1.55916 1.68388 3.36435 3.41554 3.42328 3.82514 3.95855 4.32664 4.53251 4.59506 5.01443 5.17137 5.37626 5.39030 5.46839 5.50457 5.67115 5.78222 5.94555 5.96904 6.03611 6.23519 6.27007 6.30438 6.35953 6.54895 6.57039 6.63013 6.82038 6.82997 6.96725 7.02634 7.11833 7.13820 7.63396 7.71544 8.25330 8.42647 9.12946 9.56657 9.78364 10.23382 11.22895 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.005571 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.268565 B = 5025.228527 C = 5880.263952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 N -0.575 5.575 4 C -0.246 4.246 5 H 0.073 0.927 6 C 0.005 3.995 7 N -0.909 5.909 8 Si 0.916 3.084 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.284 1.284 12 C 0.175 3.825 13 C 0.535 3.465 14 O -0.507 6.507 15 N -0.685 5.685 16 C 0.153 3.847 17 C -0.102 4.102 18 C -0.110 4.110 19 C -0.106 4.106 20 C -0.105 4.105 21 C -0.137 4.137 22 C 0.039 3.961 23 F -0.147 7.147 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.256 0.744 30 H 0.035 0.965 31 H 0.099 0.901 32 H 0.399 0.601 33 H 0.167 0.833 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -1.681 8.801 10.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 N -0.295 5.295 4 C -0.375 4.375 5 H 0.090 0.910 6 C -0.192 4.192 7 N -0.556 5.556 8 Si 0.747 3.253 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.211 1.211 12 C 0.044 3.956 13 C 0.323 3.677 14 O -0.379 6.379 15 N -0.329 5.329 16 C 0.054 3.946 17 C -0.122 4.122 18 C -0.129 4.129 19 C -0.107 4.107 20 C -0.162 4.162 21 C -0.156 4.156 22 C 0.017 3.983 23 F -0.126 7.126 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.233 0.767 33 H 0.185 0.815 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.176 -2.037 8.145 9.863 hybrid contribution -0.126 1.009 -0.244 1.046 sum 5.050 -1.028 7.900 9.433 Atomic orbital electron populations 1.22313 0.99569 0.99197 1.01388 1.20773 0.91738 0.86409 0.99291 1.43701 1.74374 1.08964 1.02422 1.19169 1.17254 1.10852 0.90208 0.90961 1.24946 0.95978 1.00486 0.97744 1.69336 1.25094 1.30659 1.30491 0.86150 0.77075 0.79372 0.82733 1.21170 1.21715 1.21063 1.20410 0.88115 0.99883 0.87163 1.22259 0.92668 0.75588 0.77157 1.90437 1.62732 1.39192 1.45553 1.44135 1.04780 1.58955 1.25046 1.18002 0.86023 0.99346 0.91224 1.21669 0.91561 0.98120 1.00843 1.21017 0.95262 1.00619 0.95974 1.19549 0.95594 1.02829 0.92747 1.20678 0.91655 1.01819 1.02013 1.20620 0.90763 1.04601 0.99636 1.17431 0.88088 1.10417 0.82380 1.91413 1.70906 1.93856 1.56399 0.92979 0.94241 0.93756 0.93604 0.94554 0.93259 0.94694 0.88287 0.76685 0.81533 0.85930 0.91588 0.91983 0.91690 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.21 37.16 0.38 -2.51 16 2 C 0.14 3.01 6.39 -4.04 -0.03 2.99 16 3 N -0.57 -13.91 2.03 -174.61 -0.35 -14.27 16 4 C -0.25 -6.49 9.67 -15.06 -0.15 -6.64 16 5 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 6 C 0.01 0.14 5.22 -17.43 -0.09 0.05 16 7 N -0.91 -24.40 7.99 55.49 0.44 -23.95 16 8 Si 0.92 21.54 29.56 -169.99 -5.02 16.52 16 9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.18 3.92 5.41 -5.19 -0.03 3.89 16 13 C 0.54 12.31 5.40 -10.99 -0.06 12.25 16 14 O -0.51 -13.44 12.77 5.55 0.07 -13.37 16 15 N -0.68 -13.55 5.31 -9.81 -0.05 -13.60 16 16 C 0.15 2.97 6.44 -83.59 -0.54 2.44 16 17 C -0.10 -2.03 8.72 -39.41 -0.34 -2.38 16 18 C -0.11 -1.80 9.69 -39.60 -0.38 -2.19 16 19 C -0.11 -1.52 5.88 -104.59 -0.62 -2.14 16 20 C -0.10 -1.11 10.01 36.01 0.36 -0.74 16 21 C -0.14 -2.03 9.67 -39.54 -0.38 -2.41 16 22 C 0.04 0.67 7.31 -39.25 -0.29 0.39 16 23 F -0.15 -2.42 16.81 2.25 0.04 -2.38 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.10 2.35 6.83 -51.93 -0.35 2.00 16 32 H 0.40 6.81 8.45 -40.82 -0.35 6.46 16 33 H 0.17 3.97 5.79 -52.48 -0.30 3.66 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 38 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -29.57 322.07 -7.37 -36.93 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.18 Total: 6.26 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.16 Total: 3.00 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.04 Total: -51.82 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.57 -7.37 -36.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355663221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.268 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds