Wall clock time and date at job start Tue Mar 31 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.47010 * 2 1 4 4 C 1.36939 * 119.99837 * 274.98456 * 3 2 1 5 5 H 1.07996 * 119.99844 * 24.10620 * 4 3 2 6 6 C 1.38809 * 119.99417 * 204.10928 * 4 3 2 7 7 N 1.31613 * 120.00789 * 5.04233 * 6 4 3 8 8 Si 1.86801 * 119.99546 * 185.04247 * 6 4 3 9 9 H 1.48505 * 109.47015 * 59.99971 * 8 6 4 10 10 H 1.48503 * 109.47421 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47507 * 300.00188 * 8 6 4 12 12 C 1.46497 * 119.99980 * 94.98000 * 3 2 1 13 13 C 1.50703 * 109.46862 * 90.00029 * 12 3 2 14 14 O 1.21284 * 120.00093 * 359.97438 * 13 12 3 15 15 N 1.34774 * 119.99856 * 179.97438 * 13 12 3 16 16 C 1.40047 * 120.00136 * 185.83702 * 15 13 12 17 17 C 1.38807 * 120.07775 * 24.68492 * 16 15 13 18 18 C 1.38143 * 119.95547 * 179.97438 * 17 16 15 19 19 C 1.38284 * 120.10920 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.91853 * 179.97438 * 19 18 17 21 21 C 1.38265 * 120.15867 * 359.75571 * 19 18 17 22 22 C 1.38313 * 120.04336 * 0.50053 * 21 19 18 23 23 F 1.35102 * 120.05565 * 179.77121 * 22 21 19 24 24 H 1.08992 * 109.47100 * 60.00085 * 1 2 3 25 25 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46792 * 299.99717 * 1 2 3 27 27 H 1.08996 * 109.47229 * 239.99683 * 2 1 3 28 28 H 1.09006 * 109.47204 * 119.99903 * 2 1 3 29 29 H 0.96998 * 120.00335 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47657 * 330.00196 * 12 3 2 31 31 H 1.08999 * 109.47311 * 209.99668 * 12 3 2 32 32 H 0.97008 * 120.00232 * 5.83328 * 15 13 12 33 33 H 1.08003 * 120.02336 * 359.97438 * 17 16 15 34 34 H 1.07993 * 119.94880 * 180.02562 * 18 17 16 35 35 H 1.08994 * 109.46976 * 90.00606 * 20 19 18 36 36 H 1.09005 * 109.47177 * 210.00351 * 20 19 18 37 37 H 1.08993 * 109.47503 * 330.00287 * 20 19 18 38 38 H 1.08000 * 119.98011 * 180.27367 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1494 2.0611 -1.1815 5 1 1.5609 1.7713 -2.0394 6 6 3.0388 3.1226 -1.2763 7 7 3.8273 3.4132 -0.2633 8 14 3.1164 4.1389 -2.8417 9 1 1.7907 4.7577 -3.0965 10 1 4.1387 5.2053 -2.6895 11 1 3.4811 3.2623 -3.9835 12 6 2.3663 2.0351 1.2639 13 6 3.8202 1.7875 1.5739 14 8 4.4987 1.1292 0.8141 15 7 4.3664 2.2976 2.6955 16 6 5.7425 2.1726 2.9236 17 6 6.6132 2.0126 1.8545 18 6 7.9702 1.8901 2.0825 19 6 8.4628 1.9270 3.3741 20 6 9.9439 1.7923 3.6179 21 6 7.6002 2.0917 4.4421 22 6 6.2399 2.2097 4.2216 23 9 5.3963 2.3660 5.2653 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.4490 4.1548 -0.3298 30 1 1.7496 1.6284 2.0654 31 1 2.1906 3.1075 1.1787 32 1 3.8064 2.7514 3.3447 33 1 6.2301 1.9840 0.8452 34 1 8.6476 1.7660 1.2506 35 1 10.4050 2.7798 3.6079 36 1 10.1113 1.3229 4.5873 37 1 10.3865 1.1767 2.8349 38 1 7.9885 2.1245 5.4493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355663221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:21 Heat of formation + Delta-G solvation = -44.210234 kcal Electronic energy + Delta-G solvation = -22269.877256 eV Core-core repulsion = 18834.144120 eV Total energy + Delta-G solvation = -3435.733136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.84111 -41.04448 -39.37772 -37.36905 -35.52844 -33.77316 -32.52552 -31.42821 -30.93579 -28.84282 -26.97272 -25.36810 -24.02477 -22.86598 -22.14276 -21.04840 -19.21096 -18.41155 -17.74072 -17.69683 -17.12222 -16.74623 -16.41069 -15.76294 -15.58730 -15.35175 -15.05343 -14.70741 -14.46893 -14.34654 -14.26301 -14.03144 -13.37348 -13.16471 -12.99136 -12.81236 -12.76158 -12.60470 -12.59626 -12.34194 -12.28923 -12.06965 -11.82272 -11.55022 -11.05110 -10.71027 -10.22242 -9.72633 -8.72555 -8.70746 -7.88253 -5.29858 0.22171 0.35779 1.46275 1.48177 1.53578 2.25730 2.41078 2.58587 2.85253 3.26751 3.35623 3.64050 3.83013 4.00719 4.26930 4.35329 4.39297 4.45362 4.64557 4.73675 4.79178 4.80622 4.92654 4.94654 5.05854 5.10699 5.18109 5.22927 5.27073 5.29913 5.42794 5.57525 5.63946 5.66306 5.75525 6.17378 6.31940 6.79995 7.15932 7.75806 7.95071 8.27718 9.17895 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018523 B = 0.005571 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.268565 B = 5025.228527 C = 5880.263952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.069 0.931 6 C -0.042 4.042 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.275 1.275 10 H -0.298 1.298 11 H -0.288 1.288 12 C 0.176 3.824 13 C 0.537 3.463 14 O -0.550 6.550 15 N -0.679 5.679 16 C 0.121 3.879 17 C -0.127 4.127 18 C -0.114 4.114 19 C -0.090 4.090 20 C -0.104 4.104 21 C -0.129 4.129 22 C 0.040 3.960 23 F -0.143 7.143 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.041 0.959 29 H 0.245 0.755 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.410 0.590 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 -1.860 10.578 12.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.015 3.985 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.087 0.913 6 C -0.237 4.237 7 N -0.563 5.563 8 Si 0.801 3.199 9 H -0.201 1.201 10 H -0.225 1.225 11 H -0.215 1.215 12 C 0.045 3.955 13 C 0.326 3.674 14 O -0.425 6.425 15 N -0.324 5.324 16 C 0.024 3.976 17 C -0.148 4.148 18 C -0.132 4.132 19 C -0.092 4.092 20 C -0.160 4.160 21 C -0.148 4.148 22 C 0.018 3.982 23 F -0.122 7.122 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.246 0.754 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.229 -2.217 9.964 11.958 hybrid contribution -0.361 1.019 -0.719 1.299 sum 5.868 -1.197 9.245 11.015 Atomic orbital electron populations 1.22124 0.96497 1.01121 1.01174 1.20907 0.93975 0.84837 0.98768 1.43923 1.74789 1.10150 1.02333 1.19362 1.17152 1.11161 0.91113 0.91285 1.25606 0.96174 1.01725 1.00156 1.69534 1.25058 1.30321 1.31365 0.85278 0.77012 0.77758 0.79809 1.20104 1.22468 1.21470 1.20425 0.88479 0.99004 0.87596 1.22249 0.92724 0.75111 0.77335 1.90421 1.63634 1.41206 1.47222 1.43808 1.05509 1.58674 1.24457 1.18147 0.85498 1.01627 0.92377 1.21368 0.93498 1.00844 0.99091 1.21223 0.93903 1.00180 0.97924 1.20007 0.97932 0.99840 0.91378 1.20786 0.88302 1.03283 1.03635 1.21073 0.89534 1.02646 1.01560 1.17531 0.89117 1.10143 0.81451 1.91421 1.71075 1.93812 1.55898 0.94073 0.91210 0.93007 0.95206 0.94038 0.94468 0.91424 0.90021 0.75430 0.85994 0.84424 0.89893 0.89771 0.90703 0.81868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 10.21 71.98 0.74 -4.30 16 2 C 0.14 5.89 6.39 86.38 0.55 6.44 16 3 N -0.59 -29.17 2.03 -706.33 -1.43 -30.60 16 4 C -0.26 -13.97 9.67 84.03 0.81 -13.16 16 5 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 6 C -0.04 -2.27 5.22 84.86 0.44 -1.82 16 7 N -0.92 -51.07 7.99 21.65 0.17 -50.90 16 8 Si 0.97 45.42 29.56 68.60 2.03 47.44 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 C 0.18 8.01 5.41 85.63 0.46 8.48 16 13 C 0.54 25.58 5.40 87.66 0.47 26.05 16 14 O -0.55 -30.58 12.77 -3.04 -0.04 -30.62 16 15 N -0.68 -27.62 5.31 -303.33 -1.61 -29.23 16 16 C 0.12 4.79 6.44 38.16 0.25 5.04 16 17 C -0.13 -5.28 8.72 22.38 0.20 -5.09 16 18 C -0.11 -3.66 9.69 22.26 0.22 -3.45 16 19 C -0.09 -2.33 5.88 -19.85 -0.12 -2.45 16 20 C -0.10 -1.72 10.01 71.24 0.71 -1.01 16 21 C -0.13 -3.42 9.67 22.29 0.22 -3.21 16 22 C 0.04 1.31 7.31 22.48 0.16 1.47 16 23 F -0.14 -4.47 16.81 44.97 0.76 -3.72 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 28 H 0.04 1.66 8.03 -2.38 -0.02 1.65 16 29 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 31 H 0.08 3.99 6.83 -2.39 -0.02 3.97 16 32 H 0.41 14.22 8.45 -92.70 -0.78 13.43 16 33 H 0.12 6.24 5.79 -2.91 -0.02 6.23 16 34 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 37 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 38 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -66.55 322.07 5.28 -61.27 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.29 Total: 23.34 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.11 Total: 13.00 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -2.87 Total: -110.72 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.04 Total: -30.62 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.76 Total: -3.72 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.55 5.28 -61.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355663221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.063 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds