Wall clock time and date at job start Tue Mar 31 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 H 1.09004 * 109.47338 * 54.86865 * 3 2 1 5 5 C 1.50706 * 109.47157 * 174.86761 * 3 2 1 6 6 H 1.07999 * 119.99841 * 119.99749 * 5 3 2 7 7 C 1.37874 * 119.99739 * 300.00099 * 5 3 2 8 8 N 1.31514 * 120.00465 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47136 * 89.99897 * 9 7 5 11 11 H 1.48494 * 109.47145 * 209.99782 * 9 7 5 12 12 H 1.48499 * 109.47056 * 330.00069 * 9 7 5 13 13 N 1.46898 * 109.47218 * 294.86492 * 3 2 1 14 14 C 1.46903 * 111.00027 * 153.66355 * 13 3 2 15 15 C 1.50704 * 109.47085 * 176.17921 * 14 13 3 16 16 C 1.33634 * 126.03423 * 89.69500 * 15 14 13 17 17 N 1.31783 * 114.49737 * 179.79113 * 16 15 14 18 18 C 1.29027 * 117.12381 * 0.51592 * 17 16 15 19 19 C 1.50700 * 124.91561 * 179.68365 * 18 17 16 20 20 C 1.53779 * 113.61521 * 39.17472 * 19 18 17 21 21 C 1.53956 * 87.02311 * 220.04806 * 20 19 18 22 22 C 1.53779 * 87.10679 * 25.36435 * 21 20 19 23 23 S 1.70974 * 110.16677 * 359.71965 * 18 17 16 24 24 H 1.08995 * 109.47067 * 66.12283 * 1 2 3 25 25 H 1.08994 * 109.47353 * 186.12910 * 1 2 3 26 26 H 1.09001 * 109.46951 * 306.12738 * 1 2 3 27 27 H 1.08997 * 109.47363 * 239.99656 * 2 1 3 28 28 H 1.09002 * 109.47082 * 119.99924 * 2 1 3 29 29 H 0.97001 * 119.99982 * 179.97438 * 8 7 5 30 30 H 1.00906 * 110.99851 * 29.71456 * 13 3 2 31 31 H 1.08995 * 109.47184 * 296.18340 * 14 13 3 32 32 H 1.08997 * 109.46949 * 56.18330 * 14 13 3 33 33 H 1.07998 * 122.75298 * 359.97163 * 16 15 14 34 34 H 1.08994 * 112.85295 * 170.37475 * 19 18 17 35 35 H 1.09003 * 113.61618 * 334.56868 * 20 19 18 36 36 H 1.09002 * 113.61551 * 105.47167 * 20 19 18 37 37 H 1.08995 * 113.53916 * 270.81299 * 21 20 19 38 38 H 1.08998 * 113.74414 * 139.94235 * 21 20 19 39 39 H 1.09006 * 113.61440 * 220.08837 * 22 21 20 40 40 H 1.09002 * 113.61948 * 89.18770 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8405 5 6 3.5417 1.4444 0.1271 6 1 4.1486 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4014 0.3391 2.1771 9 14 6.0020 0.8810 1.3903 10 1 6.4383 2.1144 2.0928 11 1 6.4343 -0.3094 2.1655 12 1 6.6131 0.8394 0.0375 13 7 1.6542 2.0983 -1.2566 14 6 1.5442 3.5524 -1.0793 15 6 1.2398 4.1986 -2.4064 16 6 0.0227 4.4270 -2.9088 17 7 0.0200 5.0111 -4.0901 18 6 1.1672 5.2788 -4.6166 19 6 1.3684 5.9357 -5.9579 20 6 0.3609 7.0599 -6.2507 21 6 0.3090 6.5281 -7.6945 22 6 0.7295 5.1633 -7.1242 23 16 2.4258 4.7795 -3.5727 24 1 -0.3633 0.4160 -0.9397 25 1 -0.3634 -1.0217 0.1097 26 1 -0.3633 0.6059 0.8301 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8229 -0.0588 2.9550 30 1 0.7945 1.7119 -1.6170 31 1 0.7419 3.7730 -0.3753 32 1 2.4850 3.9435 -0.6922 33 1 -0.8843 4.1578 -2.3880 34 1 2.4049 6.2203 -6.1386 35 1 -0.5808 6.9535 -5.7121 36 1 0.7863 8.0600 -6.1678 37 1 1.0554 6.9760 -8.3504 38 1 -0.6912 6.5308 -8.1276 39 1 1.4523 4.6343 -7.7455 40 1 -0.1111 4.5373 -6.8248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358283705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:57 Heat of formation + Delta-G solvation = 51.836539 kcal Electronic energy + Delta-G solvation = -19207.297221 eV Core-core repulsion = 16341.942162 eV Total energy + Delta-G solvation = -2865.355059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.92370 -38.20328 -36.41230 -33.05807 -31.58748 -29.82857 -27.60435 -26.20297 -25.75673 -24.21165 -23.12815 -22.29778 -20.32920 -19.62629 -18.34112 -17.90238 -16.34497 -15.81837 -15.30743 -14.95629 -14.71647 -14.37481 -14.18950 -13.82148 -13.05491 -12.76211 -12.61454 -12.56632 -12.45693 -12.07954 -12.05669 -11.64041 -11.20740 -10.99134 -10.84831 -10.82661 -10.68610 -10.64486 -10.60116 -9.99581 -9.82807 -9.69088 -9.28835 -9.16830 -8.92044 -8.49037 -8.38096 -7.32788 -5.99975 -4.04474 0.96318 1.61718 2.08667 3.03280 3.30524 3.37440 3.42204 4.18185 4.42616 4.51433 4.52719 4.68285 4.75153 5.17427 5.30607 5.35311 5.42172 5.50837 5.56514 5.66571 5.68561 5.74144 5.81224 5.97458 6.08935 6.12000 6.13362 6.25517 6.34007 6.39150 6.48892 6.80802 7.02242 7.12376 7.41368 7.73285 7.87200 7.96134 8.20058 8.33924 8.67427 9.03076 9.60792 11.05363 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003808 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.472695 B = 7350.560402 C = 8058.246079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.681 5.681 14 C 0.137 3.863 15 C -0.186 4.186 16 C 0.019 3.981 17 N -0.470 5.470 18 C 0.033 3.967 19 C -0.039 4.039 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.122 4.122 23 S 0.139 5.861 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.101 0.899 29 H 0.260 0.740 30 H 0.320 0.680 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 10.428 -14.198 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.313 5.313 14 C 0.006 3.994 15 C -0.308 4.308 16 C -0.132 4.132 17 N -0.184 5.184 18 C -0.245 4.245 19 C -0.061 4.061 20 C -0.160 4.160 21 C -0.179 4.179 22 C -0.161 4.161 23 S 0.395 5.605 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.138 0.862 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.335 10.518 -14.555 18.473 hybrid contribution -0.614 -0.346 1.274 1.456 sum -4.948 10.172 -13.281 17.445 Atomic orbital electron populations 1.21885 0.99556 0.99846 0.99523 1.21768 0.91250 1.00165 1.03191 1.19194 0.95572 0.90025 0.83983 0.97836 1.21198 0.91110 1.36628 1.04477 0.92062 1.24955 0.98188 0.95538 0.95786 1.69867 1.34792 1.39263 1.09630 0.86549 0.85708 0.77384 0.78091 1.20844 1.21325 1.19854 1.60753 1.36680 1.00424 1.33401 1.20237 1.01243 0.90266 0.87674 1.26201 0.94984 1.06739 1.02907 1.21580 0.97712 1.01851 0.92061 1.66073 1.27150 1.14459 1.10761 1.26698 0.91651 1.04560 1.01542 1.21215 1.00253 0.97029 0.87554 1.22949 0.99736 0.96902 0.96367 1.22842 1.01882 0.96767 0.96443 1.22928 1.00866 0.96692 0.95591 1.84059 1.12250 1.53301 1.10866 0.94627 0.94291 0.93851 0.93973 0.88131 0.93029 0.86247 0.94236 0.89492 0.81419 0.87620 0.88848 0.91386 0.90143 0.91137 0.91156 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.63 37.16 0.36 -2.51 16 2 C -0.13 -2.90 5.35 -26.73 -0.14 -3.05 16 3 C 0.22 5.33 2.03 -68.86 -0.14 5.19 16 4 H 0.00 0.11 7.83 -51.93 -0.41 -0.30 16 5 C -0.50 -13.44 8.62 -34.44 -0.30 -13.73 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.12 11.29 55.43 0.63 -24.50 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -14.20 6.27 -109.21 -0.68 -14.88 16 14 C 0.14 2.55 5.98 -4.97 -0.03 2.52 16 15 C -0.19 -3.06 6.14 -35.92 -0.22 -3.28 16 16 C 0.02 0.30 11.25 -19.19 -0.22 0.08 16 17 N -0.47 -7.12 10.08 -11.87 -0.12 -7.24 16 18 C 0.03 0.45 6.47 -13.46 -0.09 0.37 16 19 C -0.04 -0.41 4.24 -90.96 -0.39 -0.79 16 20 C -0.12 -1.13 7.62 -25.83 -0.20 -1.33 16 21 C -0.14 -1.12 8.09 -25.83 -0.21 -1.33 16 22 C -0.12 -1.17 7.63 -25.92 -0.20 -1.37 16 23 S 0.14 2.07 23.18 -107.50 -2.49 -0.43 16 24 H 0.03 0.61 6.65 -51.93 -0.35 0.26 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 2.62 5.95 -51.93 -0.31 2.32 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.32 6.20 6.60 -39.29 -0.26 5.94 16 31 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.09 1.75 7.99 -51.93 -0.41 1.33 16 33 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.02 7.74 -51.93 -0.40 0.62 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -28.36 338.32 -10.78 -39.14 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.33 Total: 4.36 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -1.86 Total: -17.81 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.18 Total: -46.62 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.49 Total: -0.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.36 -10.78 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358283705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.980 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds