Wall clock time and date at job start Tue Mar 31 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47182 * 2 1 4 4 H 1.09004 * 109.47338 * 54.86865 * 3 2 1 5 5 C 1.50706 * 109.47157 * 174.86761 * 3 2 1 6 6 H 1.07999 * 119.99841 * 119.99749 * 5 3 2 7 7 C 1.37874 * 119.99739 * 300.00099 * 5 3 2 8 8 N 1.31514 * 120.00465 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47136 * 89.99897 * 9 7 5 11 11 H 1.48494 * 109.47145 * 209.99782 * 9 7 5 12 12 H 1.48499 * 109.47056 * 330.00069 * 9 7 5 13 13 N 1.46898 * 109.47218 * 294.86492 * 3 2 1 14 14 C 1.46903 * 111.00027 * 153.66355 * 13 3 2 15 15 C 1.50704 * 109.47085 * 176.17921 * 14 13 3 16 16 C 1.33634 * 126.03423 * 89.69500 * 15 14 13 17 17 N 1.31783 * 114.49737 * 179.79113 * 16 15 14 18 18 C 1.29027 * 117.12381 * 0.51592 * 17 16 15 19 19 C 1.50700 * 124.91561 * 179.68365 * 18 17 16 20 20 C 1.53779 * 113.61521 * 39.17472 * 19 18 17 21 21 C 1.53956 * 87.02311 * 220.04806 * 20 19 18 22 22 C 1.53779 * 87.10679 * 25.36435 * 21 20 19 23 23 S 1.70974 * 110.16677 * 359.71965 * 18 17 16 24 24 H 1.08995 * 109.47067 * 66.12283 * 1 2 3 25 25 H 1.08994 * 109.47353 * 186.12910 * 1 2 3 26 26 H 1.09001 * 109.46951 * 306.12738 * 1 2 3 27 27 H 1.08997 * 109.47363 * 239.99656 * 2 1 3 28 28 H 1.09002 * 109.47082 * 119.99924 * 2 1 3 29 29 H 0.97001 * 119.99982 * 179.97438 * 8 7 5 30 30 H 1.00906 * 110.99851 * 29.71456 * 13 3 2 31 31 H 1.08995 * 109.47184 * 296.18340 * 14 13 3 32 32 H 1.08997 * 109.46949 * 56.18330 * 14 13 3 33 33 H 1.07998 * 122.75298 * 359.97163 * 16 15 14 34 34 H 1.08994 * 112.85295 * 170.37475 * 19 18 17 35 35 H 1.09003 * 113.61618 * 334.56868 * 20 19 18 36 36 H 1.09002 * 113.61551 * 105.47167 * 20 19 18 37 37 H 1.08995 * 113.53916 * 270.81299 * 21 20 19 38 38 H 1.08998 * 113.74414 * 139.94235 * 21 20 19 39 39 H 1.09006 * 113.61440 * 220.08837 * 22 21 20 40 40 H 1.09002 * 113.61948 * 89.18770 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8405 5 6 3.5417 1.4444 0.1271 6 1 4.1486 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4014 0.3391 2.1771 9 14 6.0020 0.8810 1.3903 10 1 6.4383 2.1144 2.0928 11 1 6.4343 -0.3094 2.1655 12 1 6.6131 0.8394 0.0375 13 7 1.6542 2.0983 -1.2566 14 6 1.5442 3.5524 -1.0793 15 6 1.2398 4.1986 -2.4064 16 6 0.0227 4.4270 -2.9088 17 7 0.0200 5.0111 -4.0901 18 6 1.1672 5.2788 -4.6166 19 6 1.3684 5.9357 -5.9579 20 6 0.3609 7.0599 -6.2507 21 6 0.3090 6.5281 -7.6945 22 6 0.7295 5.1633 -7.1242 23 16 2.4258 4.7795 -3.5727 24 1 -0.3633 0.4160 -0.9397 25 1 -0.3634 -1.0217 0.1097 26 1 -0.3633 0.6059 0.8301 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8229 -0.0588 2.9550 30 1 0.7945 1.7119 -1.6170 31 1 0.7419 3.7730 -0.3753 32 1 2.4850 3.9435 -0.6922 33 1 -0.8843 4.1578 -2.3880 34 1 2.4049 6.2203 -6.1386 35 1 -0.5808 6.9535 -5.7121 36 1 0.7863 8.0600 -6.1678 37 1 1.0554 6.9760 -8.3504 38 1 -0.6912 6.5308 -8.1276 39 1 1.4523 4.6343 -7.7455 40 1 -0.1111 4.5373 -6.8248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358283705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:57 Heat of formation + Delta-G solvation = 35.879568 kcal Electronic energy + Delta-G solvation = -19207.989167 eV Core-core repulsion = 16341.942162 eV Total energy + Delta-G solvation = -2866.047005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98902 -39.14556 -38.13145 -34.82302 -33.39810 -31.18767 -29.00336 -27.84729 -26.49392 -25.56321 -24.54946 -23.80635 -21.51426 -21.24599 -19.33946 -19.07659 -18.38034 -16.83917 -16.79188 -16.45751 -15.96904 -15.88803 -15.39795 -15.29226 -14.74257 -14.16385 -13.97762 -13.68781 -13.47338 -13.34115 -13.27826 -13.05409 -12.98629 -12.72756 -12.56413 -12.17272 -11.99484 -11.82647 -11.59760 -11.51687 -11.39598 -11.31212 -11.08346 -10.44898 -10.42749 -10.16366 -9.69425 -9.07928 -8.08065 -6.20070 -0.22616 0.43733 0.89852 1.40597 1.42244 1.52641 1.84937 2.43360 3.16592 3.18171 3.65287 3.76430 3.79271 3.86862 4.01182 4.06015 4.24741 4.40322 4.48490 4.55328 4.62141 4.70271 4.73363 4.84461 4.90387 4.93745 5.07332 5.08068 5.13876 5.20721 5.23654 5.27909 5.34591 5.55803 5.61243 5.72774 5.86241 6.31792 6.43301 6.78409 6.90258 6.92695 7.48908 8.95082 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003808 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.472695 B = 7350.560402 C = 8058.246079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.226 3.774 4 H -0.025 1.025 5 C -0.513 4.513 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.147 3.853 15 C -0.214 4.214 16 C 0.029 3.971 17 N -0.487 5.487 18 C 0.051 3.949 19 C -0.049 4.049 20 C -0.119 4.119 21 C -0.127 4.127 22 C -0.123 4.123 23 S 0.131 5.869 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.183 0.817 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 11.294 -16.134 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.118 3.882 4 H -0.007 1.007 5 C -0.552 4.552 6 H 0.066 0.934 7 C -0.187 4.187 8 N -0.558 5.558 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.314 5.314 14 C 0.016 3.984 15 C -0.336 4.336 16 C -0.122 4.122 17 N -0.201 5.201 18 C -0.226 4.226 19 C -0.071 4.071 20 C -0.159 4.159 21 C -0.165 4.165 22 C -0.162 4.162 23 S 0.389 5.611 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.200 0.800 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.494 11.389 -16.496 20.543 hybrid contribution -0.595 -0.557 1.794 1.971 sum -5.089 10.832 -14.701 18.957 Atomic orbital electron populations 1.21750 0.96205 1.01214 1.00519 1.21592 0.94257 0.98821 1.01248 1.18955 0.94105 0.90699 0.84419 1.00701 1.21448 0.92723 1.36690 1.04351 0.93358 1.25651 1.02232 0.95251 0.95535 1.69989 1.36258 1.39658 1.09921 0.85624 0.80880 0.77534 0.78004 1.20296 1.20801 1.19675 1.60614 1.37453 1.01828 1.31541 1.20014 1.00312 0.88812 0.89292 1.25891 0.95961 1.08985 1.02731 1.21840 0.97866 1.00513 0.91989 1.66174 1.27600 1.15517 1.10841 1.27387 0.90738 1.02527 1.01965 1.21603 1.01875 0.97717 0.85909 1.22929 0.98485 0.97218 0.97255 1.22821 1.02888 0.95045 0.95737 1.22920 1.00451 0.97502 0.95356 1.84044 1.12618 1.53514 1.10965 0.92516 0.92440 0.94206 0.94635 0.91212 0.93008 0.85151 0.93632 0.91762 0.79983 0.85657 0.90613 0.89932 0.88029 0.90544 0.89951 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.63 71.98 0.69 -4.47 16 2 C -0.12 -5.65 5.35 30.59 0.16 -5.49 16 3 C 0.23 11.24 2.03 44.17 0.09 11.33 16 4 H -0.02 -1.34 7.83 -2.39 -0.02 -1.36 16 5 C -0.51 -28.51 8.62 25.60 0.22 -28.29 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.01 0.65 5.29 84.65 0.45 1.10 16 8 N -0.92 -52.46 11.29 21.45 0.24 -52.21 16 9 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.68 -28.71 6.27 -499.45 -3.13 -31.84 16 14 C 0.15 5.55 5.98 85.56 0.51 6.06 16 15 C -0.21 -6.98 6.14 24.64 0.15 -6.83 16 16 C 0.03 0.88 11.25 83.66 0.94 1.82 16 17 N -0.49 -14.19 10.08 -191.45 -1.93 -16.12 16 18 C 0.05 1.34 6.47 88.52 0.57 1.92 16 19 C -0.05 -0.93 4.24 -11.01 -0.05 -0.97 16 20 C -0.12 -1.95 7.62 31.18 0.24 -1.71 16 21 C -0.13 -1.62 8.09 31.18 0.25 -1.37 16 22 C -0.12 -2.08 7.63 31.12 0.24 -1.84 16 23 S 0.13 3.84 23.18 -56.49 -1.31 2.53 16 24 H 0.06 1.85 6.65 -2.39 -0.02 1.83 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 3.72 5.95 -2.39 -0.01 3.71 16 29 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.33 12.61 6.60 -89.69 -0.59 12.01 16 31 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 32 H 0.06 2.68 7.99 -2.39 -0.02 2.66 16 33 H 0.18 4.74 8.06 -2.91 -0.02 4.71 16 34 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.53 7.74 -2.39 -0.02 1.51 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 Total: -1.00 -61.40 338.32 0.80 -60.60 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.43 Total: 19.69 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 4.47 Total: -28.75 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -4.82 Total: -100.17 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.31 Total: 2.53 kcal Total: -61.40 0.80 -60.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358283705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.478 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds