Wall clock time and date at job start Tue Mar 31 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47440 * 2 1 4 4 C 1.53005 * 109.47099 * 240.00039 * 2 1 3 5 5 C 1.50699 * 109.46896 * 59.99901 * 4 2 1 6 6 H 1.08000 * 120.00160 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99696 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99885 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00229 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47536 * 89.99764 * 9 7 5 11 11 H 1.48500 * 109.47381 * 209.99846 * 9 7 5 12 12 H 1.48499 * 109.47065 * 329.99420 * 9 7 5 13 13 C 1.52998 * 109.47328 * 120.00055 * 2 1 3 14 14 N 1.46505 * 109.47216 * 299.99756 * 13 2 1 15 15 C 1.34778 * 119.99994 * 179.97438 * 14 13 2 16 16 O 1.21526 * 119.99935 * 0.02562 * 15 14 13 17 17 C 1.48000 * 119.99796 * 180.02562 * 15 14 13 18 18 C 1.39900 * 120.94016 * 359.97438 * 17 15 14 19 19 C 1.38043 * 119.03143 * 180.02562 * 18 17 15 20 20 N 1.31856 * 120.98249 * 0.02562 * 19 18 17 21 21 C 1.31719 * 122.09667 * 359.72296 * 20 19 18 22 22 C 1.38541 * 120.84235 * 0.54065 * 21 20 19 23 23 F 1.35104 * 120.53449 * 179.74907 * 22 21 20 24 24 H 1.09001 * 109.46360 * 299.99890 * 1 2 3 25 25 H 1.08998 * 109.47089 * 59.99858 * 1 2 3 26 26 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47568 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47095 * 300.00138 * 3 2 1 29 29 H 1.09006 * 109.47029 * 59.99950 * 3 2 1 30 30 H 1.09006 * 109.47176 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.46923 * 299.99864 * 4 2 1 32 32 H 0.97001 * 119.99585 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.47241 * 179.97438 * 13 2 1 34 34 H 1.08998 * 109.47243 * 59.99800 * 13 2 1 35 35 H 0.96996 * 119.99886 * 0.02562 * 14 13 2 36 36 H 1.08004 * 120.48539 * 0.02562 * 18 17 15 37 37 H 1.08003 * 119.50372 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.57808 * 180.28994 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7319 8 7 1.4323 0.1381 -4.8058 9 14 2.9451 -2.0003 -3.9034 10 1 2.0865 -3.2112 -3.9494 11 1 3.7374 -1.9075 -5.1559 12 1 3.8652 -2.0897 -2.7412 13 6 2.0400 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4455 15 6 1.8770 -0.4914 3.6695 16 8 2.5757 -1.4795 3.7810 17 6 1.3833 0.2060 4.8780 18 6 0.5783 1.3453 4.7725 19 6 0.1401 1.9651 5.9255 20 7 0.4698 1.4988 7.1140 21 6 1.2211 0.4270 7.2616 22 6 1.7099 -0.2551 6.1593 23 9 2.4841 -1.3509 6.3179 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 -0.7209 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 1.6667 -0.1933 -5.6868 33 1 3.1301 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3565 36 1 0.3037 1.7344 3.8031 37 1 -0.4813 2.8454 5.8530 38 1 1.4625 0.0779 8.2547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359767755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:55 Heat of formation + Delta-G solvation = -77.357522 kcal Electronic energy + Delta-G solvation = -21530.084604 eV Core-core repulsion = 18092.914094 eV Total energy + Delta-G solvation = -3437.170510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.07021 -41.61999 -40.39442 -38.71809 -35.42066 -34.32690 -33.44130 -31.96354 -29.77459 -28.00594 -27.98889 -25.93962 -24.66248 -24.02368 -21.93571 -20.25022 -19.09197 -18.88462 -18.38047 -18.31078 -17.13526 -16.94849 -16.47519 -16.33894 -16.02363 -15.39487 -15.31085 -15.24134 -14.93177 -14.55610 -14.48733 -14.22099 -14.15309 -13.91621 -13.17895 -12.95229 -12.84953 -12.62544 -12.31024 -12.18064 -11.80383 -11.61811 -11.52782 -11.20828 -11.12791 -10.93424 -10.70697 -10.68196 -10.21861 -10.08683 -8.22746 -6.22598 -0.61115 -0.18935 1.35229 1.38735 1.47795 1.67317 1.88260 2.38548 2.58685 2.83865 3.13037 3.33710 3.40650 3.55940 3.66669 3.87869 4.02979 4.13048 4.29208 4.50984 4.61363 4.65182 4.67225 4.75678 4.76162 4.93557 4.99276 5.09697 5.23524 5.30413 5.40092 5.41291 5.44400 5.55312 5.69384 5.76211 6.33687 6.38064 6.65923 6.84505 6.99129 7.40369 8.92667 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034125 B = 0.003614 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.326210 B = 7745.824794 C = 8369.782048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C -0.005 4.005 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.253 1.253 13 C 0.136 3.864 14 N -0.695 5.695 15 C 0.549 3.451 16 O -0.569 6.569 17 C -0.139 4.139 18 C -0.099 4.099 19 C 0.095 3.905 20 N -0.455 5.455 21 C 0.077 3.923 22 C 0.077 3.923 23 F -0.127 7.127 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.415 0.585 36 H 0.180 0.820 37 H 0.210 0.790 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 4.789 23.173 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.043 4.043 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.757 3.243 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.177 1.177 13 C 0.013 3.987 14 N -0.348 5.348 15 C 0.336 3.664 16 O -0.448 6.448 17 C -0.151 4.151 18 C -0.119 4.119 19 C -0.062 4.062 20 N -0.164 5.164 21 C -0.081 4.081 22 C 0.055 3.945 23 F -0.105 7.105 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.255 0.745 36 H 0.198 0.802 37 H 0.227 0.773 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.155 4.472 23.773 24.395 hybrid contribution 0.879 -1.273 -1.727 2.319 sum -2.276 3.199 22.046 22.393 Atomic orbital electron populations 1.21735 0.93607 1.01403 1.01583 1.20570 0.96719 0.96243 0.92318 1.21731 1.00316 0.94682 1.01586 1.19577 0.95970 0.95521 0.93185 1.21364 1.30219 1.12333 0.89959 0.92640 1.25799 0.97411 0.99752 0.95977 1.70036 1.48098 1.42629 0.98429 0.85941 0.79934 0.80576 0.77879 1.19799 1.21558 1.17659 1.21399 0.98594 0.95785 0.82950 1.45797 1.52589 1.32022 1.04352 1.18342 0.80333 0.83812 0.83909 1.90826 1.39267 1.27545 1.87189 1.20616 1.02794 0.99464 0.92181 1.22718 0.93793 0.91995 1.03439 1.23508 0.96923 0.99990 0.85745 1.67706 1.09982 1.10334 1.28338 1.23283 0.94615 0.91572 0.98658 1.19260 0.94140 0.86400 0.94734 1.91570 1.71992 1.50804 1.96144 0.90911 0.93300 0.93702 0.93742 0.93299 0.90898 0.96756 0.96895 0.92879 0.92321 0.92257 0.74543 0.80241 0.77333 0.78774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.05 71.98 0.58 -3.25 16 2 C -0.06 -1.92 0.54 -52.18 -0.03 -1.95 16 3 C -0.13 -3.83 8.05 71.98 0.58 -3.26 16 4 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 5 C -0.50 -26.39 8.20 25.60 0.21 -26.18 16 6 H 0.06 3.13 5.92 -2.91 -0.02 3.11 16 7 C 0.01 0.39 5.47 84.65 0.46 0.86 16 8 N -0.95 -57.67 13.96 21.45 0.30 -57.37 16 9 Si 0.93 43.83 27.47 68.60 1.88 45.72 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 13 C 0.14 4.12 4.56 86.38 0.39 4.51 16 14 N -0.69 -16.39 4.92 -465.82 -2.29 -18.68 16 15 C 0.55 15.03 7.79 86.83 0.68 15.71 16 16 O -0.57 -20.92 15.48 -3.80 -0.06 -20.98 16 17 C -0.14 -2.86 5.91 -19.85 -0.12 -2.98 16 18 C -0.10 -1.17 9.61 22.63 0.22 -0.95 16 19 C 0.09 0.95 11.17 84.64 0.95 1.90 16 20 N -0.46 -6.73 10.33 -195.81 -2.02 -8.75 16 21 C 0.08 1.22 11.17 84.78 0.95 2.17 16 22 C 0.08 1.67 7.33 22.78 0.17 1.84 16 23 F -0.13 -3.47 15.72 44.97 0.71 -2.77 16 24 H 0.07 1.56 6.86 -2.39 -0.02 1.55 16 25 H 0.05 1.75 6.62 -2.39 -0.02 1.74 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.76 6.62 -2.39 -0.02 1.74 16 29 H 0.07 1.57 6.86 -2.38 -0.02 1.55 16 30 H 0.01 0.63 7.20 -2.38 -0.02 0.61 16 31 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.41 6.91 4.30 -92.71 -0.40 6.51 16 36 H 0.18 0.94 6.54 -2.91 -0.02 0.92 16 37 H 0.21 0.46 8.06 -2.91 -0.02 0.44 16 38 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -72.53 315.08 4.28 -68.25 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.63 Total: 6.28 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.13 Total: -11.70 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -4.01 Total: -84.80 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.06 Total: -20.98 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.71 Total: -2.77 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Total: -72.53 4.28 -68.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359767755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.109 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds