Wall clock time and date at job start Tue Mar 31 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47518 * 2 1 4 4 C 1.53003 * 109.46836 * 120.00161 * 2 1 3 5 5 C 1.50707 * 109.47097 * 184.00447 * 4 2 1 6 6 H 1.08005 * 119.99796 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00037 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00106 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99845 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47069 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47083 * 300.00004 * 9 7 5 12 12 H 1.48497 * 109.47173 * 60.00336 * 9 7 5 13 13 N 1.46900 * 109.47215 * 239.99824 * 2 1 3 14 14 C 1.46846 * 111.00263 * 306.40208 * 13 2 1 15 15 C 1.53031 * 109.52720 * 185.84127 * 14 13 2 16 16 C 1.53125 * 109.27667 * 300.82253 * 15 14 13 17 17 C 1.53113 * 109.16230 * 57.65138 * 16 15 14 18 18 H 1.09002 * 109.53387 * 62.30824 * 17 16 15 19 19 C 1.50697 * 109.50452 * 182.40686 * 17 16 15 20 20 N 1.29031 * 124.91636 * 59.50091 * 19 17 16 21 21 C 1.31783 * 117.12233 * 179.81748 * 20 19 17 22 22 C 1.33636 * 114.50427 * 0.46649 * 21 20 19 23 23 S 1.70985 * 124.91690 * 239.80558 * 19 17 16 24 24 C 1.46849 * 111.00027 * 70.61336 * 13 2 1 25 25 H 1.09005 * 109.47388 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47287 * 300.00119 * 1 2 3 27 27 H 1.09001 * 109.47277 * 60.00091 * 1 2 3 28 28 H 1.08997 * 109.47553 * 64.00464 * 4 2 1 29 29 H 1.09001 * 109.46865 * 303.99906 * 4 2 1 30 30 H 0.97005 * 120.00220 * 0.02562 * 8 7 5 31 31 H 1.09002 * 109.46418 * 305.85820 * 14 13 2 32 32 H 1.09000 * 109.46173 * 65.81744 * 14 13 2 33 33 H 1.08998 * 109.50802 * 180.88295 * 15 14 13 34 34 H 1.08999 * 109.50566 * 60.76158 * 15 14 13 35 35 H 1.09007 * 109.52103 * 297.74549 * 16 15 14 36 36 H 1.08997 * 109.57683 * 177.59440 * 16 15 14 37 37 H 1.07996 * 122.74641 * 180.22750 * 21 20 19 38 38 H 1.07995 * 126.04274 * 179.71952 * 22 21 20 39 39 H 1.09000 * 109.45995 * 294.17409 * 24 13 2 40 40 H 1.08999 * 109.45825 * 54.15285 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5437 -0.6360 1.2999 6 1 4.0818 -0.1193 0.5190 7 6 4.2324 -1.2174 2.3432 8 7 3.5770 -1.8461 3.2945 9 14 6.0964 -1.1123 2.4056 10 1 6.5913 -1.8112 3.6189 11 1 6.6692 -1.7546 1.1954 12 1 6.5105 0.3130 2.4526 13 7 2.0196 -0.6925 -1.1994 14 6 1.4280 -2.0318 -1.3123 15 6 2.0676 -2.7762 -2.4864 16 6 1.8328 -1.9838 -3.7755 17 6 2.4157 -0.5772 -3.6140 18 1 3.4924 -0.6445 -3.4579 19 6 2.1368 0.2287 -4.8565 20 7 0.9610 0.4866 -5.3211 21 6 0.8948 1.2111 -6.4199 22 6 2.0810 1.5768 -6.9150 23 16 3.3330 0.9273 -5.8589 24 6 1.7660 0.1035 -2.4071 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7363 -1.7676 1.2141 29 1 1.6191 -0.2505 2.1378 30 1 2.6091 -1.9011 3.2619 31 1 1.6057 -2.5862 -0.3907 32 1 0.3549 -1.9418 -1.4804 33 1 1.6172 -3.7644 -2.5796 34 1 3.1387 -2.8788 -2.3123 35 1 0.7626 -1.9145 -3.9707 36 1 2.3230 -2.4879 -4.6084 37 1 -0.0413 1.4835 -6.8845 38 1 2.2436 2.1658 -7.8055 39 1 0.6913 0.1834 -2.5702 40 1 2.1894 1.0999 -2.2808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411207190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:46 Heat of formation + Delta-G solvation = 32.839049 kcal Electronic energy + Delta-G solvation = -20196.654022 eV Core-core repulsion = 17330.475170 eV Total energy + Delta-G solvation = -2866.178852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.04270 -38.74698 -35.21062 -32.74781 -31.74992 -29.86819 -28.93627 -26.95215 -25.41587 -23.96044 -22.84838 -22.52296 -20.93431 -19.29503 -18.60488 -17.99373 -16.58360 -15.89197 -15.35373 -14.82864 -14.48885 -14.18243 -13.97266 -13.67454 -13.63062 -13.44365 -13.11564 -12.73965 -12.42029 -12.01731 -11.63213 -11.55127 -11.36349 -11.14293 -10.98396 -10.67825 -10.55666 -10.50743 -10.24053 -10.05343 -9.97416 -9.66522 -9.47793 -9.34970 -8.95487 -8.42454 -8.18385 -7.49186 -6.18654 -3.83840 0.60758 1.26044 1.65934 2.74402 3.53021 3.55385 3.73675 4.02311 4.48583 4.67738 4.91732 4.97719 5.00520 5.09651 5.34664 5.41704 5.50948 5.57180 5.61891 5.71412 5.80701 5.83196 5.90590 5.97343 6.01243 6.07245 6.14381 6.18807 6.30108 6.41245 6.54673 6.62059 6.69393 6.88222 7.31525 7.47982 7.66146 7.84169 7.91846 8.42263 8.69698 9.06850 9.84803 11.21593 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.004627 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.180022 B = 6049.597161 C = 6579.390284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.096 3.904 3 H 0.069 0.931 4 C 0.018 3.982 5 C -0.569 4.569 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.924 5.924 9 Si 1.067 2.933 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.508 5.508 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.102 4.102 17 C -0.009 4.009 18 H 0.099 0.901 19 C 0.072 3.928 20 N -0.475 5.475 21 C 0.040 3.960 22 C -0.272 4.272 23 S 0.117 5.883 24 C 0.070 3.930 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.265 0.735 31 H 0.086 0.914 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.038 0.962 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 3.850 -19.535 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.012 4.012 3 H 0.088 0.912 4 C -0.019 4.019 5 C -0.608 4.608 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.562 5.562 9 Si 0.896 3.104 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.218 1.218 13 N -0.232 5.232 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.032 4.032 18 H 0.117 0.883 19 C -0.207 4.207 20 N -0.189 5.189 21 C -0.111 4.111 22 C -0.411 4.411 23 S 0.373 5.627 24 C -0.060 4.060 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.190 0.810 38 H 0.192 0.808 39 H 0.056 0.944 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.456 3.203 -18.330 18.664 hybrid contribution -3.102 0.987 -1.627 3.639 sum -4.558 4.190 -19.957 20.895 Atomic orbital electron populations 1.22543 0.99701 1.01402 1.00798 1.21730 0.89950 0.98174 0.91324 0.91247 1.19316 0.97493 0.94692 0.90428 1.21944 0.91286 1.37638 1.09937 0.92794 1.25745 1.06570 0.94066 0.92980 1.70792 1.09898 1.41394 1.34084 0.83572 0.74978 0.76047 0.75798 1.21186 1.21583 1.21751 1.61978 1.58557 1.01821 1.00800 1.22097 0.95153 0.90881 0.99177 1.21590 1.02469 0.97692 0.93563 1.21559 1.01180 0.93191 0.98181 1.19968 1.02053 0.93515 0.87617 0.88303 1.27270 0.90551 1.01324 1.01509 1.66247 1.24917 1.15497 1.12271 1.21818 0.98774 0.97619 0.92881 1.27038 0.95569 1.11283 1.07239 1.84140 1.12998 1.46856 1.18751 1.21954 0.98118 0.96644 0.89245 0.92791 0.92636 0.93916 0.97191 0.97395 0.92465 0.89601 0.95645 0.91697 0.90648 0.91446 0.92213 0.81036 0.80842 0.94393 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.27 8.44 37.15 0.31 -2.96 16 2 C 0.10 1.98 2.26 -67.71 -0.15 1.83 16 3 H 0.07 1.48 7.98 -51.93 -0.41 1.06 16 4 C 0.02 0.45 3.68 -27.88 -0.10 0.34 16 5 C -0.57 -15.99 8.81 -34.44 -0.30 -16.29 16 6 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.01 0.24 5.46 -17.82 -0.10 0.14 16 8 N -0.92 -28.47 13.65 55.43 0.76 -27.71 16 9 Si 1.07 25.79 29.90 -169.99 -5.08 20.70 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.51 -9.65 4.29 -226.70 -0.97 -10.62 16 14 C 0.05 0.96 4.53 -3.84 -0.02 0.94 16 15 C -0.12 -1.70 6.09 -26.65 -0.16 -1.86 16 16 C -0.10 -1.37 5.26 -26.61 -0.14 -1.51 16 17 C -0.01 -0.13 2.79 -91.70 -0.26 -0.38 16 18 H 0.10 1.42 8.13 -51.93 -0.42 1.00 16 19 C 0.07 0.95 5.91 -13.46 -0.08 0.87 16 20 N -0.48 -6.48 10.53 -11.86 -0.12 -6.61 16 21 C 0.04 0.44 11.35 -19.19 -0.22 0.22 16 22 C -0.27 -2.60 11.37 29.12 0.33 -2.27 16 23 S 0.12 1.27 23.17 -107.50 -2.49 -1.22 16 24 C 0.07 1.15 4.40 -3.83 -0.02 1.13 16 25 H 0.05 0.94 6.45 -51.93 -0.34 0.60 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.69 6.84 -51.93 -0.36 0.34 16 28 H 0.01 0.26 6.15 -51.93 -0.32 -0.06 16 29 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 30 H 0.27 8.13 7.22 -40.82 -0.29 7.84 16 31 H 0.09 1.73 6.17 -51.93 -0.32 1.40 16 32 H 0.03 0.43 6.57 -51.93 -0.34 0.09 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.04 0.64 6.89 -51.93 -0.36 0.28 16 40 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -31.05 326.19 -10.05 -41.11 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.15 Total: -0.77 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -0.90 Total: -19.79 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.34 Total: -44.95 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.70 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.49 Total: -1.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.05 -10.05 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411207190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.945 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds