Wall clock time and date at job start Tue Mar 31 2020 02:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46813 * 2 1 4 4 C 1.53002 * 109.47208 * 239.99817 * 2 1 3 5 5 C 1.50702 * 109.47073 * 174.99890 * 4 2 1 6 6 H 1.08003 * 119.99700 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00128 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99668 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47184 * 90.00072 * 9 7 5 11 11 H 1.48504 * 109.47170 * 209.99803 * 9 7 5 12 12 H 1.48500 * 109.47391 * 329.99958 * 9 7 5 13 13 N 1.46896 * 109.47042 * 119.99792 * 2 1 3 14 14 C 1.46957 * 111.00125 * 294.99903 * 13 2 1 15 15 C 1.53053 * 109.36627 * 183.19102 * 14 13 2 16 16 N 1.46961 * 109.35965 * 301.60075 * 15 14 13 17 17 C 1.39615 * 110.99385 * 183.18933 * 16 15 14 18 18 C 1.34108 * 125.23539 * 179.97438 * 17 16 15 19 19 C 1.38579 * 114.71654 * 179.97438 * 18 17 16 20 20 C 1.33220 * 114.98773 * 359.97438 * 19 18 17 21 21 S 1.75856 * 109.74719 * 359.75926 * 20 19 18 22 22 C 1.46948 * 110.88251 * 59.32403 * 16 15 14 23 23 C 1.46955 * 111.00246 * 58.80171 * 13 2 1 24 24 H 1.09004 * 109.46813 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47477 * 300.00107 * 1 2 3 26 26 H 1.09002 * 109.47182 * 60.00336 * 1 2 3 27 27 H 1.09000 * 109.47329 * 294.99862 * 4 2 1 28 28 H 1.09005 * 109.46924 * 55.00084 * 4 2 1 29 29 H 0.97003 * 119.99666 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.48450 * 63.22460 * 14 13 2 31 31 H 1.08997 * 109.50712 * 303.17343 * 14 13 2 32 32 H 1.08997 * 109.48938 * 181.63663 * 15 14 13 33 33 H 1.08993 * 109.50714 * 61.57923 * 15 14 13 34 34 H 1.07995 * 122.63566 * 359.97438 * 18 17 16 35 35 H 1.07999 * 122.50603 * 179.97438 * 19 18 17 36 36 H 1.08008 * 125.13003 * 179.97438 * 20 19 18 37 37 H 1.08995 * 109.49243 * 60.64399 * 22 16 15 38 38 H 1.09003 * 109.49221 * 180.71229 * 22 16 15 39 39 H 1.08997 * 109.48942 * 296.77959 * 23 13 2 40 40 H 1.09002 * 109.48912 * 56.82196 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1926 -2.3583 8 7 3.5764 -1.8370 -3.2999 9 14 6.0920 -1.0601 -2.4373 10 1 6.7009 -2.2127 -1.7258 11 1 6.5290 -1.0676 -3.8565 12 1 6.5261 0.2051 -1.7923 13 7 2.0196 -0.6924 1.1994 14 6 1.6485 0.0395 2.4185 15 6 2.2435 -0.6697 3.6373 16 7 1.7490 -2.0528 3.6857 17 6 2.2144 -2.7108 4.8257 18 6 1.9370 -3.9814 5.1531 19 6 2.5153 -4.4145 6.3356 20 6 3.2575 -3.5049 6.9653 21 16 3.2618 -2.0039 6.0490 22 6 2.1202 -2.7847 2.4667 23 6 1.5251 -2.0755 1.2479 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7716 -1.2056 28 1 1.6054 -0.2618 -2.1370 29 1 4.0607 -2.2431 -4.0357 30 1 0.5627 0.0685 2.5088 31 1 2.0362 1.0568 2.3645 32 1 1.9454 -0.1450 4.5449 33 1 3.3308 -0.6747 3.5606 34 1 1.3121 -4.6169 4.5432 35 1 2.3748 -5.4147 6.7181 36 1 3.7807 -3.6661 7.8963 37 1 3.2060 -2.8138 2.3764 38 1 1.7321 -3.8019 2.5208 39 1 0.4379 -2.0704 1.3249 40 1 1.8230 -2.6002 0.3401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411315697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:15 Heat of formation + Delta-G solvation = 46.959164 kcal Electronic energy + Delta-G solvation = -20154.052243 eV Core-core repulsion = 17288.485686 eV Total energy + Delta-G solvation = -2865.566558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72582 -37.74331 -35.83318 -32.84980 -31.12575 -30.74837 -28.29259 -27.32645 -25.57326 -23.74403 -23.32818 -22.69606 -20.40245 -19.09087 -18.73692 -17.84723 -16.20200 -15.83246 -15.36627 -14.87297 -14.63135 -14.46454 -14.38339 -14.06351 -13.54672 -13.06889 -12.74511 -12.60810 -12.33381 -12.15487 -11.81818 -11.76450 -11.57397 -11.20752 -11.11926 -10.94278 -10.71835 -10.63961 -10.43264 -10.36850 -9.92940 -9.69078 -9.18636 -9.01947 -8.49365 -8.28899 -7.78019 -7.56153 -5.92145 -3.90317 1.04343 1.50928 1.97413 2.76661 3.37143 3.43442 3.47361 3.73866 4.42717 4.54002 4.95273 5.07866 5.19400 5.29202 5.41540 5.44986 5.47027 5.59421 5.64101 5.71127 5.74577 5.85316 5.91700 5.96945 6.04546 6.08364 6.18581 6.29328 6.36486 6.42804 6.55268 6.65094 6.87879 6.92802 6.99961 7.47568 7.61395 7.82920 7.94885 8.08866 8.53813 9.15816 9.71907 11.19664 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.004695 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.588054 B = 5961.773483 C = 6629.094495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.513 5.513 14 C 0.054 3.946 15 C 0.048 3.952 16 N -0.453 5.453 17 C 0.036 3.964 18 C -0.191 4.191 19 C -0.107 4.107 20 C -0.240 4.240 21 S 0.068 5.932 22 C 0.061 3.939 23 C 0.055 3.945 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.258 0.742 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 -1.556 17.579 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.236 5.236 14 C -0.074 4.074 15 C -0.079 4.079 16 N -0.169 5.169 17 C -0.180 4.180 18 C -0.223 4.223 19 C -0.137 4.137 20 C -0.376 4.376 21 S 0.327 5.673 22 C -0.065 4.065 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.490 -0.211 17.541 17.886 hybrid contribution 0.250 -1.392 -0.207 1.430 sum -3.240 -1.603 17.334 17.707 Atomic orbital electron populations 1.22517 0.99606 1.01405 1.00782 1.21917 0.90170 0.98465 0.91494 0.91051 1.19233 0.96405 0.95333 0.89871 1.21166 0.91749 1.33130 1.07040 0.92171 1.24995 0.97983 0.95851 0.95940 1.69962 1.35225 1.36866 1.12315 0.86645 0.86438 0.78359 0.76809 1.20939 1.21576 1.20024 1.62310 1.58936 1.01319 1.01082 1.22124 0.98164 0.97564 0.89575 1.22436 0.99211 0.86933 0.99358 1.59228 1.53897 1.03259 1.00526 1.23743 0.99198 0.97118 0.97933 1.19932 1.07281 0.95236 0.99837 1.19935 0.98366 1.00317 0.95113 1.25270 1.09826 0.96374 1.06149 1.84421 1.47437 1.16652 1.18821 1.22481 1.00263 0.96869 0.86874 1.22234 0.96900 0.90590 0.97590 0.92865 0.93991 0.92471 0.96209 0.96222 0.93281 0.94264 0.90181 0.90175 0.92227 0.84291 0.84555 0.82324 0.92354 0.89997 0.94528 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.49 37.16 0.32 -2.77 16 2 C 0.09 1.72 2.30 -67.72 -0.16 1.56 16 3 H 0.07 1.43 8.11 -51.93 -0.42 1.01 16 4 C 0.03 0.70 4.27 -27.88 -0.12 0.58 16 5 C -0.49 -13.47 8.84 -34.44 -0.30 -13.77 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.51 -9.38 4.41 -226.49 -1.00 -10.38 16 14 C 0.05 0.83 5.25 -3.77 -0.02 0.81 16 15 C 0.05 0.68 4.67 -3.76 -0.02 0.67 16 16 N -0.45 -6.59 4.80 -172.12 -0.83 -7.41 16 17 C 0.04 0.49 6.03 -15.45 -0.09 0.39 16 18 C -0.19 -2.39 9.53 -40.91 -0.39 -2.78 16 19 C -0.11 -1.17 10.17 -41.21 -0.42 -1.59 16 20 C -0.24 -2.58 11.21 28.98 0.32 -2.26 16 21 S 0.07 0.82 21.48 -107.50 -2.31 -1.49 16 22 C 0.06 0.95 5.43 -3.77 -0.02 0.93 16 23 C 0.06 0.96 4.82 -3.77 -0.02 0.94 16 24 H 0.05 0.89 6.45 -51.93 -0.34 0.56 16 25 H 0.04 0.63 6.59 -51.93 -0.34 0.29 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.02 0.51 6.11 -51.93 -0.32 0.19 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.04 0.59 6.60 -51.93 -0.34 0.24 16 31 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 32 H 0.08 1.01 7.67 -51.93 -0.40 0.61 16 33 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 34 H 0.14 1.63 7.63 -52.49 -0.40 1.23 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.13 7.31 -51.93 -0.38 0.75 16 39 H 0.04 0.61 6.46 -51.93 -0.34 0.28 16 40 H 0.10 2.03 6.07 -51.93 -0.32 1.72 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -29.28 323.00 -10.64 -39.92 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.08 Total: -0.37 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -1.01 Total: -15.93 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -1.09 Total: -43.82 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.31 Total: -1.49 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.28 -10.64 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411315697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.883 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds