Wall clock time and date at job start Tue Mar 31 2020 02:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46813 * 2 1 4 4 C 1.53002 * 109.47208 * 239.99817 * 2 1 3 5 5 C 1.50702 * 109.47073 * 174.99890 * 4 2 1 6 6 H 1.08003 * 119.99700 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00128 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99668 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47184 * 90.00072 * 9 7 5 11 11 H 1.48504 * 109.47170 * 209.99803 * 9 7 5 12 12 H 1.48500 * 109.47391 * 329.99958 * 9 7 5 13 13 N 1.46896 * 109.47042 * 119.99792 * 2 1 3 14 14 C 1.46957 * 111.00125 * 294.99903 * 13 2 1 15 15 C 1.53053 * 109.36627 * 183.19102 * 14 13 2 16 16 N 1.46961 * 109.35965 * 301.60075 * 15 14 13 17 17 C 1.39615 * 110.99385 * 183.18933 * 16 15 14 18 18 C 1.34108 * 125.23539 * 179.97438 * 17 16 15 19 19 C 1.38579 * 114.71654 * 179.97438 * 18 17 16 20 20 C 1.33220 * 114.98773 * 359.97438 * 19 18 17 21 21 S 1.75856 * 109.74719 * 359.75926 * 20 19 18 22 22 C 1.46948 * 110.88251 * 59.32403 * 16 15 14 23 23 C 1.46955 * 111.00246 * 58.80171 * 13 2 1 24 24 H 1.09004 * 109.46813 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47477 * 300.00107 * 1 2 3 26 26 H 1.09002 * 109.47182 * 60.00336 * 1 2 3 27 27 H 1.09000 * 109.47329 * 294.99862 * 4 2 1 28 28 H 1.09005 * 109.46924 * 55.00084 * 4 2 1 29 29 H 0.97003 * 119.99666 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.48450 * 63.22460 * 14 13 2 31 31 H 1.08997 * 109.50712 * 303.17343 * 14 13 2 32 32 H 1.08997 * 109.48938 * 181.63663 * 15 14 13 33 33 H 1.08993 * 109.50714 * 61.57923 * 15 14 13 34 34 H 1.07995 * 122.63566 * 359.97438 * 18 17 16 35 35 H 1.07999 * 122.50603 * 179.97438 * 19 18 17 36 36 H 1.08008 * 125.13003 * 179.97438 * 20 19 18 37 37 H 1.08995 * 109.49243 * 60.64399 * 22 16 15 38 38 H 1.09003 * 109.49221 * 180.71229 * 22 16 15 39 39 H 1.08997 * 109.48942 * 296.77959 * 23 13 2 40 40 H 1.09002 * 109.48912 * 56.82196 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1926 -2.3583 8 7 3.5764 -1.8370 -3.2999 9 14 6.0920 -1.0601 -2.4373 10 1 6.7009 -2.2127 -1.7258 11 1 6.5290 -1.0676 -3.8565 12 1 6.5261 0.2051 -1.7923 13 7 2.0196 -0.6924 1.1994 14 6 1.6485 0.0395 2.4185 15 6 2.2435 -0.6697 3.6373 16 7 1.7490 -2.0528 3.6857 17 6 2.2144 -2.7108 4.8257 18 6 1.9370 -3.9814 5.1531 19 6 2.5153 -4.4145 6.3356 20 6 3.2575 -3.5049 6.9653 21 16 3.2618 -2.0039 6.0490 22 6 2.1202 -2.7847 2.4667 23 6 1.5251 -2.0755 1.2479 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7716 -1.2056 28 1 1.6054 -0.2618 -2.1370 29 1 4.0607 -2.2431 -4.0357 30 1 0.5627 0.0685 2.5088 31 1 2.0362 1.0568 2.3645 32 1 1.9454 -0.1450 4.5449 33 1 3.3308 -0.6747 3.5606 34 1 1.3121 -4.6169 4.5432 35 1 2.3748 -5.4147 6.7181 36 1 3.7807 -3.6661 7.8963 37 1 3.2060 -2.8138 2.3764 38 1 1.7321 -3.8019 2.5208 39 1 0.4379 -2.0704 1.3249 40 1 1.8230 -2.6002 0.3401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411315697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:14 Heat of formation + Delta-G solvation = 29.052585 kcal Electronic energy + Delta-G solvation = -20154.828731 eV Core-core repulsion = 17288.485686 eV Total energy + Delta-G solvation = -2866.343045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.95004 -38.88383 -37.04610 -34.84058 -32.61825 -32.04465 -29.55705 -28.99770 -26.77212 -25.21514 -24.84419 -23.90411 -21.82553 -20.23269 -19.95478 -18.90248 -18.34545 -16.96496 -16.64379 -16.51945 -15.99548 -15.73872 -15.61609 -15.39695 -14.77458 -14.63394 -13.94642 -13.82146 -13.68131 -13.49117 -13.29688 -13.13379 -12.90370 -12.82243 -12.58562 -12.42110 -12.31763 -12.09646 -12.01433 -11.67005 -11.57135 -11.09740 -11.00451 -10.70925 -10.47119 -9.40654 -8.98665 -8.79215 -8.10118 -6.14522 0.11135 0.57416 1.09084 1.41268 1.41779 1.52388 1.86616 2.46794 2.66217 3.03743 3.26397 3.77917 3.97210 4.08528 4.24525 4.29135 4.30143 4.32500 4.39890 4.52657 4.56935 4.58573 4.65365 4.75683 4.84651 4.91901 4.97186 5.02910 5.13341 5.19813 5.28072 5.32927 5.49467 5.51098 5.70136 5.75467 5.90227 5.95405 6.29330 6.36308 6.49418 6.99309 7.51436 9.01737 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.004695 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.588054 B = 5961.773483 C = 6629.094495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.068 0.932 4 C 0.035 3.965 5 C -0.499 4.499 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.952 3.048 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.267 1.267 13 N -0.532 5.532 14 C 0.058 3.942 15 C 0.054 3.946 16 N -0.454 5.454 17 C 0.003 3.997 18 C -0.187 4.187 19 C -0.117 4.117 20 C -0.230 4.230 21 S 0.062 5.938 22 C 0.071 3.929 23 C 0.063 3.937 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.000 1.000 28 H -0.007 1.007 29 H 0.258 0.742 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -1.559 20.014 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 H 0.086 0.914 4 C -0.002 4.002 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.580 5.580 9 Si 0.778 3.222 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.257 5.257 14 C -0.070 4.070 15 C -0.074 4.074 16 N -0.171 5.171 17 C -0.212 4.212 18 C -0.220 4.220 19 C -0.147 4.147 20 C -0.365 4.365 21 S 0.321 5.679 22 C -0.055 4.055 23 C -0.066 4.066 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.019 0.981 28 H 0.011 0.989 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.181 0.819 36 H 0.204 0.796 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.255 -0.204 20.004 20.268 hybrid contribution 0.188 -1.441 -0.880 1.699 sum -3.067 -1.645 19.124 19.438 Atomic orbital electron populations 1.22374 0.97149 1.01613 1.02058 1.21615 0.92076 0.97395 0.90140 0.91377 1.19084 0.95124 0.94550 0.91472 1.21473 0.93273 1.32383 1.06602 0.92555 1.25786 1.02503 0.95711 0.95758 1.70084 1.36950 1.37991 1.13009 0.85642 0.81087 0.78563 0.76872 1.20574 1.21200 1.19158 1.62196 1.59787 1.01888 1.01786 1.22169 0.98803 0.97717 0.88334 1.22394 0.98314 0.87110 0.99548 1.59247 1.54366 1.03190 1.00276 1.23833 1.01021 0.98006 0.98300 1.20231 1.06597 0.94893 1.00298 1.20212 0.98211 1.01663 0.94571 1.25679 1.09020 0.95237 1.06592 1.84417 1.47217 1.17671 1.18556 1.22304 0.98687 0.97552 0.86985 1.22062 0.97338 0.90093 0.97065 0.93171 0.91498 0.92345 0.98131 0.98878 0.93287 0.93360 0.89245 0.88260 0.93577 0.83834 0.81934 0.79636 0.94550 0.88600 0.93705 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.66 8.49 71.98 0.61 -5.05 16 2 C 0.10 3.79 2.30 44.92 0.10 3.89 16 3 H 0.07 2.72 8.11 -2.39 -0.02 2.70 16 4 C 0.03 1.77 4.27 29.85 0.13 1.90 16 5 C -0.50 -27.91 8.84 25.60 0.23 -27.69 16 6 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 8 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 9 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.53 -19.47 4.41 -870.48 -3.84 -23.31 16 14 C 0.06 1.67 5.25 86.31 0.45 2.13 16 15 C 0.05 1.46 4.67 86.31 0.40 1.86 16 16 N -0.45 -12.72 4.80 -698.46 -3.35 -16.07 16 17 C 0.00 0.08 6.03 82.51 0.50 0.57 16 18 C -0.19 -4.34 9.53 21.41 0.20 -4.14 16 19 C -0.12 -2.21 10.17 21.22 0.22 -2.00 16 20 C -0.23 -4.23 11.21 66.69 0.75 -3.49 16 21 S 0.06 1.38 21.48 -56.49 -1.21 0.17 16 22 C 0.07 2.21 5.43 86.31 0.47 2.67 16 23 C 0.06 2.21 4.82 86.31 0.42 2.63 16 24 H 0.05 1.66 6.45 -2.39 -0.02 1.64 16 25 H 0.07 1.86 6.59 -2.39 -0.02 1.84 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.00 0.03 6.11 -2.39 -0.01 0.01 16 28 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 29 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.05 1.33 6.60 -2.39 -0.02 1.31 16 31 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 32 H 0.10 2.30 7.67 -2.39 -0.02 2.28 16 33 H 0.05 1.37 7.95 -2.39 -0.02 1.35 16 34 H 0.14 3.10 7.63 -2.91 -0.02 3.08 16 35 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 2.63 7.31 -2.39 -0.02 2.61 16 39 H 0.04 1.49 6.46 -2.39 -0.02 1.47 16 40 H 0.07 2.86 6.07 -2.39 -0.01 2.84 16 Total: -1.00 -63.38 323.00 -0.14 -63.52 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.02 Total: 11.39 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 4.94 Total: -26.31 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -6.91 Total: -96.09 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.21 Total: 0.17 kcal Total: -63.38 -0.14 -63.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411315697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.572 kcal (2) G-P(sol) polarization free energy of solvation -63.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds