Wall clock time and date at job start Tue Mar 31 2020 02:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.53002 * 109.47513 * 120.00206 * 2 1 3 5 5 C 1.50699 * 109.47059 * 183.71024 * 4 2 1 6 6 H 1.08008 * 120.00212 * 5.08275 * 5 4 2 7 7 C 1.37880 * 119.99812 * 185.07446 * 5 4 2 8 8 N 1.31509 * 120.00077 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99953 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47119 * 59.99795 * 9 7 5 11 11 H 1.48495 * 109.47186 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47067 * 299.99885 * 9 7 5 13 13 N 1.46901 * 109.47121 * 240.00521 * 2 1 3 14 14 C 1.46955 * 111.00445 * 72.32381 * 13 2 1 15 15 C 1.53050 * 109.36831 * 176.81584 * 14 13 2 16 16 N 1.46950 * 109.36552 * 58.40411 * 15 14 13 17 17 C 1.39616 * 111.00275 * 176.81460 * 16 15 14 18 18 C 1.34099 * 125.23120 * 303.51936 * 17 16 15 19 19 C 1.38589 * 114.71361 * 179.79333 * 18 17 16 20 20 C 1.33231 * 114.98277 * 0.49854 * 19 18 17 21 21 S 1.75849 * 109.74676 * 359.73199 * 20 19 18 22 22 C 1.46967 * 110.87856 * 300.68029 * 16 15 14 23 23 C 1.46960 * 110.99709 * 308.52966 * 13 2 1 24 24 H 1.08997 * 109.47225 * 59.99642 * 1 2 3 25 25 H 1.09003 * 109.46448 * 299.99694 * 1 2 3 26 26 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.46782 * 303.71404 * 4 2 1 28 28 H 1.08997 * 109.46696 * 63.71700 * 4 2 1 29 29 H 0.96996 * 120.00152 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.49006 * 296.78556 * 14 13 2 31 31 H 1.08999 * 109.48653 * 56.84582 * 14 13 2 32 32 H 1.09004 * 109.48659 * 298.43169 * 15 14 13 33 33 H 1.09003 * 109.48594 * 178.36966 * 15 14 13 34 34 H 1.07996 * 122.64247 * 359.97438 * 18 17 16 35 35 H 1.08000 * 122.50755 * 180.25225 * 19 18 17 36 36 H 1.08001 * 125.12074 * 179.73531 * 20 19 18 37 37 H 1.08996 * 109.48413 * 299.35654 * 22 16 15 38 38 H 1.09003 * 109.50279 * 179.29871 * 22 16 15 39 39 H 1.09003 * 109.48834 * 303.15000 * 23 13 2 40 40 H 1.08999 * 109.48991 * 63.21855 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5443 -0.6421 1.2959 6 1 4.0776 -0.0598 0.5590 7 6 4.2397 -1.3128 2.2796 8 7 3.5903 -2.0221 3.1767 9 14 6.1041 -1.2141 2.3380 10 1 6.5198 0.2015 2.5065 11 1 6.6067 -2.0166 3.4819 12 1 6.6680 -1.7483 1.0723 13 7 2.0196 -0.6924 -1.1995 14 6 1.8025 0.1220 -2.4033 15 6 2.3961 -0.5975 -3.6168 16 7 1.7659 -1.9176 -3.7569 17 6 2.2312 -2.5758 -4.8969 18 6 2.1708 -2.0942 -6.1470 19 6 2.7025 -2.9301 -7.1162 20 6 3.1821 -4.0865 -6.6604 21 16 2.9800 -4.1670 -4.9154 22 6 1.9830 -2.7321 -2.5530 23 6 1.3894 -2.0126 -1.3396 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6234 -0.2474 2.1379 28 1 1.7322 -1.7663 1.2164 29 1 4.0795 -2.4936 3.8690 30 1 0.7331 0.2690 -2.5549 31 1 2.2890 1.0896 -2.2804 32 1 3.4702 -0.7202 -3.4772 33 1 2.2106 -0.0088 -4.5152 34 1 1.7442 -1.1298 -6.3797 35 1 2.7228 -2.6656 -8.1631 36 1 3.6279 -4.8580 -7.2707 37 1 3.0524 -2.8790 -2.4015 38 1 1.4967 -3.6999 -2.6758 39 1 1.5749 -2.6013 -0.4412 40 1 0.3153 -1.8898 -1.4792 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411315698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:18 Heat of formation + Delta-G solvation = 46.643765 kcal Electronic energy + Delta-G solvation = -20161.960671 eV Core-core repulsion = 17296.380437 eV Total energy + Delta-G solvation = -2865.580235 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71759 -37.73466 -35.81254 -32.84624 -31.13664 -30.76556 -28.23599 -27.31790 -25.63353 -23.69396 -23.27517 -22.78035 -20.32000 -19.10749 -18.83317 -17.76580 -16.18189 -15.94767 -15.21437 -14.84490 -14.65954 -14.51659 -14.35751 -14.08545 -13.56033 -13.00910 -12.75796 -12.59046 -12.28074 -12.08002 -11.95490 -11.72614 -11.53121 -11.28463 -11.09418 -10.92195 -10.64299 -10.60344 -10.52998 -10.33250 -9.98974 -9.67900 -9.20102 -9.01010 -8.47610 -8.27263 -7.77754 -7.54334 -5.90213 -3.88028 1.05390 1.53038 2.00535 2.75856 3.39461 3.43551 3.46927 3.74436 4.42594 4.55262 4.97285 5.08351 5.22102 5.24670 5.43132 5.46629 5.50173 5.57301 5.60250 5.69793 5.74403 5.84803 5.90671 5.98179 6.02601 6.10894 6.19690 6.26301 6.34701 6.41099 6.51352 6.63429 6.86867 6.95380 6.99805 7.47905 7.60832 7.83798 7.96566 8.10027 8.55483 9.16748 9.73515 11.21674 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.004893 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.319981 B = 5720.986106 C = 6545.841956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.031 3.969 5 C -0.490 4.490 6 H 0.058 0.942 7 C 0.052 3.948 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.511 5.511 14 C 0.052 3.948 15 C 0.063 3.937 16 N -0.453 5.453 17 C 0.034 3.966 18 C -0.192 4.192 19 C -0.109 4.109 20 C -0.241 4.241 21 S 0.077 5.923 22 C 0.047 3.953 23 C 0.060 3.940 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.016 0.984 28 H 0.022 0.978 29 H 0.258 0.742 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -0.958 -17.483 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.006 4.006 5 C -0.529 4.529 6 H 0.076 0.924 7 C -0.147 4.147 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.235 5.235 14 C -0.077 4.077 15 C -0.064 4.064 16 N -0.169 5.169 17 C -0.182 4.182 18 C -0.224 4.224 19 C -0.140 4.140 20 C -0.377 4.377 21 S 0.337 5.663 22 C -0.081 4.081 23 C -0.068 4.068 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.177 0.823 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.816 -2.090 -16.165 16.740 hybrid contribution 0.565 0.950 -1.059 1.531 sum -3.251 -1.140 -17.224 17.565 Atomic orbital electron populations 1.22515 0.99535 1.01474 1.00716 1.21917 0.90204 0.98236 0.91670 0.91219 1.19181 0.96331 0.95494 0.89628 1.21090 0.91555 1.29014 1.11197 0.92405 1.24977 0.97937 0.95826 0.95981 1.69942 1.35262 1.32776 1.16448 0.86717 0.86483 0.77849 0.77242 1.20507 1.21623 1.20439 1.62311 1.57579 1.02125 1.01460 1.22186 0.98750 0.96860 0.89872 1.22406 0.97705 0.87479 0.98801 1.59215 1.52436 1.04209 1.01067 1.23749 1.01148 0.98228 0.95031 1.19895 1.08859 1.03216 0.90473 1.19919 1.00079 0.93658 1.00314 1.25309 1.11917 1.03246 0.97255 1.84590 1.58488 1.18048 1.05209 1.22504 1.01424 0.95874 0.88267 1.22137 0.95871 0.91781 0.97034 0.94108 0.92488 0.92707 0.96604 0.95983 0.93246 0.94515 0.90133 0.92542 0.90139 0.84447 0.84644 0.82329 0.91931 0.90052 0.88421 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.39 37.16 0.31 -2.76 16 2 C 0.09 1.72 2.26 -67.71 -0.15 1.57 16 3 H 0.07 1.39 7.98 -51.93 -0.41 0.97 16 4 C 0.03 0.76 4.40 -27.88 -0.12 0.64 16 5 C -0.49 -13.46 8.80 -34.44 -0.30 -13.76 16 6 H 0.06 1.59 7.75 -52.48 -0.41 1.18 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.51 -9.40 4.32 -226.49 -0.98 -10.38 16 14 C 0.05 0.79 5.36 -3.77 -0.02 0.77 16 15 C 0.06 0.88 5.44 -3.77 -0.02 0.86 16 16 N -0.45 -6.61 4.80 -172.11 -0.83 -7.43 16 17 C 0.03 0.47 6.03 -15.46 -0.09 0.38 16 18 C -0.19 -2.35 9.54 -40.91 -0.39 -2.74 16 19 C -0.11 -1.18 10.18 -41.20 -0.42 -1.60 16 20 C -0.24 -2.64 11.21 28.99 0.32 -2.31 16 21 S 0.08 0.98 21.48 -107.50 -2.31 -1.33 16 22 C 0.05 0.73 4.67 -3.76 -0.02 0.71 16 23 C 0.06 1.04 4.70 -3.77 -0.02 1.02 16 24 H 0.04 0.61 6.85 -51.93 -0.36 0.26 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.92 6.39 -51.93 -0.33 0.59 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.58 6.42 -51.93 -0.33 0.24 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.04 0.54 6.85 -51.93 -0.36 0.19 16 31 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.96 7.32 -51.93 -0.38 0.58 16 34 H 0.14 1.51 7.65 -52.49 -0.40 1.11 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.06 1.07 7.96 -51.93 -0.41 0.66 16 38 H 0.08 1.17 7.66 -51.93 -0.40 0.78 16 39 H 0.10 1.91 6.37 -51.93 -0.33 1.58 16 40 H 0.04 0.64 6.40 -51.93 -0.33 0.31 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -29.46 323.66 -10.66 -40.12 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.12 Total: -0.76 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.02 Total: -15.84 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -1.07 Total: -43.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.31 Total: -1.33 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.46 -10.66 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411315698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.759 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds