Wall clock time and date at job start Tue Mar 31 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46873 * 2 1 4 4 C 1.50698 * 109.47280 * 240.00379 * 2 1 3 5 5 C 1.38239 * 119.97457 * 205.96337 * 4 2 1 6 6 C 1.38200 * 120.02572 * 179.72094 * 5 4 2 7 7 C 1.38461 * 119.97263 * 0.52852 * 6 5 4 8 8 F 1.35101 * 120.02564 * 179.72030 * 7 6 5 9 9 C 1.38461 * 119.94892 * 359.74821 * 7 6 5 10 10 C 1.38195 * 119.97291 * 359.97438 * 9 7 6 11 11 N 1.46494 * 109.46818 * 120.00169 * 2 1 3 12 12 C 1.46497 * 120.00005 * 54.03159 * 11 2 1 13 13 C 1.34773 * 120.00124 * 234.02551 * 11 2 1 14 14 O 1.21588 * 120.00012 * 0.02562 * 13 11 2 15 15 N 1.34775 * 120.00507 * 180.02562 * 13 11 2 16 16 C 1.46501 * 120.00610 * 179.72903 * 15 13 11 17 17 C 1.50694 * 109.47473 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00017 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00216 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99838 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47261 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46695 * 120.00230 * 21 19 17 24 24 H 1.48494 * 109.46856 * 240.00358 * 21 19 17 25 25 H 1.08996 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47376 * 300.00084 * 1 2 3 27 27 H 1.09008 * 109.46885 * 59.99425 * 1 2 3 28 28 H 1.08003 * 119.98970 * 359.97438 * 5 4 2 29 29 H 1.08001 * 120.01558 * 180.29267 * 6 5 4 30 30 H 1.07997 * 120.01116 * 179.97438 * 9 7 6 31 31 H 1.08004 * 119.98579 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.47220 * 264.69322 * 12 11 2 33 33 H 1.08994 * 109.47416 * 24.69454 * 12 11 2 34 34 H 1.09000 * 109.47273 * 144.69645 * 12 11 2 35 35 H 0.97002 * 119.99485 * 359.97438 * 15 13 11 36 36 H 1.09003 * 109.46724 * 299.99767 * 16 15 13 37 37 H 1.08995 * 109.46897 * 59.99225 * 16 15 13 38 38 H 0.96999 * 120.00115 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 3.2777 -1.3105 -1.2215 6 6 3.7371 -1.9671 -2.3474 7 6 2.9540 -2.0143 -3.4884 8 9 3.4044 -2.6511 -4.5915 9 6 1.7093 -1.4079 -3.4981 10 6 1.2497 -0.7568 -2.3691 11 7 2.0183 -0.6906 1.1961 12 6 1.5599 -2.0494 1.4958 13 6 2.8893 -0.0761 2.0208 14 8 3.2695 1.0518 1.7722 15 7 3.3389 -0.7116 3.1209 16 6 4.2903 -0.0458 4.0142 17 6 4.6306 -0.9637 5.1599 18 1 4.1827 -1.9448 5.2172 19 6 5.5138 -0.5511 6.1349 20 7 6.0589 0.6437 6.0654 21 14 5.9351 -1.6887 7.5554 22 1 5.1939 -2.9665 7.4030 23 1 7.3950 -1.9608 7.5555 24 1 5.5517 -1.0434 8.8367 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5140 -0.8900 28 1 3.8902 -1.2697 -0.3329 29 1 4.7080 -2.4400 -2.3387 30 1 1.0979 -1.4438 -4.3876 31 1 0.2786 -0.2841 -2.3763 32 1 0.7191 -2.0047 2.1881 33 1 1.2458 -2.5385 0.5739 34 1 2.3736 -2.6158 1.9487 35 1 3.0353 -1.6112 3.3194 36 1 5.1978 0.1981 3.4617 37 1 3.8443 0.8697 4.4027 38 1 6.6800 0.9341 6.7515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426413206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:57 Heat of formation + Delta-G solvation = -46.845754 kcal Electronic energy + Delta-G solvation = -21521.377777 eV Core-core repulsion = 18085.530357 eV Total energy + Delta-G solvation = -3435.847420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.00672 -40.21820 -38.78351 -35.79239 -34.24111 -32.76279 -31.80039 -31.08557 -28.91878 -27.16970 -26.68061 -24.01704 -22.89901 -22.54246 -20.83101 -19.18780 -18.12596 -17.85617 -16.52284 -16.21503 -16.02657 -15.71286 -15.46566 -15.02860 -14.73043 -14.29209 -13.72840 -13.62064 -13.59369 -13.15720 -13.07113 -12.74640 -12.48988 -12.32812 -12.13390 -11.90537 -11.80160 -11.60789 -11.14071 -11.03258 -10.91437 -10.90543 -10.30033 -9.43366 -9.35598 -9.23301 -8.74624 -8.67473 -8.46616 -7.77713 -6.16188 -4.22783 0.98848 1.11106 3.08244 3.23519 3.30928 3.33858 3.51631 3.83770 4.13171 4.30809 4.54142 4.59247 4.74782 4.83102 5.04433 5.12689 5.20120 5.20845 5.29278 5.32322 5.48295 5.59193 5.77071 5.79229 5.86885 5.88393 6.00458 6.07696 6.16489 6.37529 6.75046 6.78125 7.11316 7.49278 7.52133 7.55966 7.83338 8.00783 8.74255 8.87991 9.29190 9.46199 10.94063 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.003620 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.273237 B = 7733.964025 C = 8234.937573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.194 3.806 3 H 0.116 0.884 4 C -0.101 4.101 5 C -0.068 4.068 6 C -0.152 4.152 7 C 0.090 3.910 8 F -0.144 7.144 9 C -0.156 4.156 10 C -0.088 4.088 11 N -0.635 5.635 12 C 0.083 3.917 13 C 0.694 3.306 14 O -0.597 6.597 15 N -0.727 5.727 16 C 0.266 3.734 17 C -0.541 4.541 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.387 0.613 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 -6.435 -16.255 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.089 3.911 3 H 0.134 0.866 4 C -0.102 4.102 5 C -0.086 4.086 6 C -0.171 4.171 7 C 0.071 3.929 8 F -0.123 7.123 9 C -0.175 4.175 10 C -0.107 4.107 11 N -0.374 5.374 12 C -0.061 4.061 13 C 0.395 3.605 14 O -0.476 6.476 15 N -0.379 5.379 16 C 0.145 3.855 17 C -0.580 4.580 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.221 0.779 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.149 -5.491 -16.304 20.501 hybrid contribution 0.306 -1.223 0.684 1.434 sum -10.843 -6.713 -15.621 20.165 Atomic orbital electron populations 1.22205 0.94397 1.02483 1.02649 1.19636 0.93527 0.97344 0.80606 0.86648 1.20443 0.94746 0.99062 0.95966 1.20963 0.95210 0.94763 0.97708 1.21186 1.00847 1.02596 0.92468 1.17754 0.94367 0.97196 0.83591 1.91485 1.89321 1.79865 1.51602 1.21084 0.95297 1.00946 1.00147 1.20968 0.99879 0.98257 0.91575 1.47081 1.48613 1.16295 1.25382 1.21602 0.99901 0.83379 1.01236 1.16113 0.79253 0.84556 0.80578 1.90869 1.62769 1.18292 1.75717 1.45856 1.48666 1.19043 1.24377 1.18996 0.86667 0.93035 0.86849 1.21247 1.27285 1.01547 1.07899 0.91960 1.24939 0.95550 0.95328 0.98163 1.69986 1.29529 1.18079 1.34642 0.86370 0.78254 0.80529 0.81797 1.19662 1.20811 1.20804 0.92077 0.91562 0.91278 0.84883 0.84822 0.84920 0.84602 0.92922 0.91286 0.91495 0.77902 0.95748 0.95702 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.29 37.16 0.31 -1.19 16 2 C 0.19 2.46 3.02 -69.08 -0.21 2.25 16 3 H 0.12 1.76 6.92 -51.93 -0.36 1.40 16 4 C -0.10 -1.17 4.87 -104.62 -0.51 -1.68 16 5 C -0.07 -0.87 9.14 -39.59 -0.36 -1.23 16 6 C -0.15 -1.79 10.03 -39.51 -0.40 -2.19 16 7 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 8 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 9 C -0.16 -1.52 10.03 -39.52 -0.40 -1.91 16 10 C -0.09 -0.84 9.13 -39.59 -0.36 -1.20 16 11 N -0.63 -9.34 1.87 -181.02 -0.34 -9.68 16 12 C 0.08 0.93 8.78 59.85 0.53 1.46 16 13 C 0.69 14.01 8.07 -86.92 -0.70 13.31 16 14 O -0.60 -14.54 15.68 5.29 0.08 -14.46 16 15 N -0.73 -15.37 5.41 -66.42 -0.36 -15.73 16 16 C 0.27 7.04 5.43 -5.20 -0.03 7.02 16 17 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.99 13.29 55.43 0.74 -25.26 16 21 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.06 0.51 7.37 -51.93 -0.38 0.13 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.50 6.55 -51.92 -0.34 0.16 16 28 H 0.13 1.94 7.34 -52.48 -0.39 1.55 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.14 0.95 6.07 -52.48 -0.32 0.63 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.66 7.30 -51.93 -0.38 0.28 16 34 H 0.07 0.76 6.65 -51.93 -0.35 0.42 16 35 H 0.39 7.09 6.17 -40.82 -0.25 6.83 16 36 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -32.09 322.16 -7.67 -39.76 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.83 Total: 4.37 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.84 Total: 2.11 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.04 Total: -50.67 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.08 Total: -14.46 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.09 -7.67 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426413206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.082 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds