Wall clock time and date at job start Tue Mar 31 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47063 * 240.00410 * 2 1 3 5 5 N 1.46508 * 109.47124 * 64.99341 * 4 2 1 6 6 C 1.34773 * 119.99799 * 179.97438 * 5 4 2 7 7 O 1.21590 * 120.00274 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99755 * 180.02562 * 6 5 4 9 9 C 1.46495 * 119.99739 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47189 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99787 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00358 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00055 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00118 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47133 * 60.00064 * 14 12 10 16 16 H 1.48497 * 109.47131 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47224 * 300.00084 * 14 12 10 18 18 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 19 19 C 1.38248 * 119.97128 * 239.99664 * 18 2 1 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 2 21 21 C 1.38458 * 119.97492 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38197 * 119.97511 * 359.47283 * 23 21 20 25 25 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 27 27 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 28 28 H 1.08998 * 109.47740 * 184.99766 * 4 2 1 29 29 H 1.08999 * 109.47080 * 305.00066 * 4 2 1 30 30 H 0.96997 * 119.99529 * 0.02562 * 5 4 2 31 31 H 0.96997 * 119.99573 * 0.02562 * 8 6 5 32 32 H 1.08996 * 109.47846 * 300.00226 * 9 8 6 33 33 H 1.08999 * 109.47186 * 60.00834 * 9 8 6 34 34 H 0.96998 * 120.00345 * 179.97438 * 13 12 10 35 35 H 1.08001 * 119.98881 * 0.02562 * 19 18 2 36 36 H 1.07995 * 120.01604 * 180.02562 * 20 19 18 37 37 H 1.08007 * 120.01064 * 179.75151 * 23 21 20 38 38 H 1.07994 * 119.98821 * 180.29814 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6522 0.0355 -2.4425 6 6 1.9962 -0.4129 -3.6660 7 8 2.6279 -1.4456 -3.7797 8 7 1.6399 0.2835 -4.7636 9 6 2.0134 -0.2042 -6.0936 10 6 1.4992 0.7496 -7.1410 11 1 0.9497 1.6311 -6.8455 12 6 1.7304 0.4969 -8.4765 13 7 2.3991 -0.5767 -8.8364 14 14 1.0937 1.6796 -9.7747 15 1 1.6887 3.0224 -9.5555 16 1 1.4710 1.1846 -11.1230 17 1 -0.3853 1.7716 -9.6778 18 6 2.0323 -0.7105 1.2303 19 6 2.8272 -0.0381 2.1400 20 6 3.2881 -0.6885 3.2689 21 6 2.9540 -2.0141 3.4885 22 9 3.4044 -2.6510 4.5915 23 6 2.1625 -2.6881 2.5739 24 6 1.6980 -2.0340 1.4486 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5139 -0.8899 28 1 3.1262 -0.7994 -1.2058 29 1 1.6053 -1.7197 -1.2953 30 1 1.1486 0.8595 -2.3517 31 1 1.1363 1.1075 -4.6728 32 1 3.0990 -0.2706 -6.1648 33 1 1.5777 -1.1903 -6.2545 34 1 2.5615 -0.7547 -9.7760 35 1 3.0874 0.9960 1.9687 36 1 3.9087 -0.1630 3.9796 37 1 1.9045 -3.7233 2.7421 38 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426423942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:53 Heat of formation + Delta-G solvation = -68.152936 kcal Electronic energy + Delta-G solvation = -20534.780552 eV Core-core repulsion = 17098.009183 eV Total energy + Delta-G solvation = -3436.771369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -49.14331 -39.93099 -39.01350 -36.06551 -34.08902 -32.91615 -32.12497 -31.45793 -29.25579 -27.50016 -25.96005 -23.69901 -23.14667 -22.28608 -20.47376 -20.15781 -18.18356 -17.89445 -16.79191 -16.12874 -15.88457 -15.80152 -15.43640 -15.18792 -14.68076 -14.41535 -14.16203 -13.88119 -13.80010 -13.37362 -13.12384 -12.99129 -12.85215 -12.46725 -11.94202 -11.89212 -11.52143 -11.39215 -11.29205 -10.98055 -10.94132 -10.84832 -10.29203 -9.42001 -9.40461 -9.37070 -8.83631 -8.76779 -8.65790 -7.74052 -6.13992 -4.20692 0.82586 0.93208 3.21709 3.26362 3.30848 3.32339 3.43683 3.97259 3.98201 4.32232 4.34725 4.42801 4.59774 4.68615 4.87368 4.96072 5.09734 5.12261 5.16389 5.21909 5.53617 5.55149 5.61567 5.73421 5.80805 5.82359 5.92187 5.96456 6.02090 6.28142 6.58448 6.86321 7.13253 7.53170 7.56501 7.59025 7.92432 8.05929 8.77845 8.96180 9.35141 9.49805 10.96250 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.047602 B = 0.002519 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.068753 B =11114.410754 C =11357.941838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 H 0.087 0.913 4 C 0.149 3.851 5 N -0.757 5.757 6 C 0.692 3.308 7 O -0.601 6.601 8 N -0.730 5.730 9 C 0.267 3.733 10 C -0.542 4.542 11 H 0.062 0.938 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.276 1.276 18 C -0.081 4.081 19 C -0.085 4.085 20 C -0.153 4.153 21 C 0.091 3.909 22 F -0.143 7.143 23 C -0.151 4.151 24 C -0.082 4.082 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.391 0.609 31 H 0.386 0.614 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.086 2.261 24.223 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 H 0.105 0.895 4 C 0.024 3.976 5 N -0.415 5.415 6 C 0.392 3.608 7 O -0.480 6.480 8 N -0.382 5.382 9 C 0.146 3.854 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.082 4.082 19 C -0.103 4.103 20 C -0.172 4.172 21 C 0.072 3.928 22 F -0.121 7.121 23 C -0.169 4.169 24 C -0.100 4.100 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.224 0.776 31 H 0.218 0.782 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.390 1.143 23.926 24.072 hybrid contribution -0.624 1.196 -0.430 1.416 sum -3.014 2.339 23.496 23.804 Atomic orbital electron populations 1.21878 0.93507 1.02715 1.02141 1.20383 0.96729 0.99658 0.91423 0.89471 1.21089 0.99876 0.94745 0.81841 1.45142 1.62750 1.28806 1.04828 1.16150 0.80383 0.83916 0.80370 1.90877 1.45972 1.25299 1.85856 1.45712 1.59003 1.26866 1.06616 1.18967 0.96139 0.95151 0.75152 1.21191 1.36985 1.08797 0.91091 0.92018 1.24944 0.94967 0.95584 0.98547 1.69966 1.39235 1.25719 1.17386 0.86473 0.79215 0.80845 0.80331 1.20101 1.21089 1.20106 1.19780 0.97981 0.94304 0.96143 1.20955 0.96267 1.00172 0.92900 1.21128 1.02888 0.93388 0.99766 1.17756 0.98567 0.91494 0.84959 1.91497 1.87554 1.82010 1.51068 1.21166 0.99716 1.01097 0.94964 1.20957 0.98648 0.93987 0.96371 0.92077 0.92318 0.91757 0.91808 0.91758 0.77593 0.78212 0.95773 0.95766 0.92406 0.84885 0.84784 0.84682 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.88 37.15 0.33 -0.77 16 2 C -0.06 -0.53 2.60 -91.78 -0.24 -0.77 16 3 H 0.09 0.65 7.87 -51.93 -0.41 0.24 16 4 C 0.15 1.84 4.80 -4.04 -0.02 1.82 16 5 N -0.76 -10.80 5.29 -65.22 -0.34 -11.15 16 6 C 0.69 14.21 8.57 -86.92 -0.74 13.46 16 7 O -0.60 -15.13 16.34 5.29 0.09 -15.05 16 8 N -0.73 -15.56 5.55 -66.42 -0.37 -15.93 16 9 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 10 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 11 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 14 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C -0.08 -0.70 4.78 -104.62 -0.50 -1.20 16 19 C -0.08 -0.67 9.67 -39.59 -0.38 -1.06 16 20 C -0.15 -1.28 10.03 -39.52 -0.40 -1.67 16 21 C 0.09 0.87 7.30 -39.42 -0.29 0.58 16 22 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 23 C -0.15 -1.33 10.03 -39.51 -0.40 -1.73 16 24 C -0.08 -0.71 8.76 -39.59 -0.35 -1.06 16 25 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.85 7.57 -51.93 -0.39 0.46 16 30 H 0.39 4.32 7.67 -40.82 -0.31 4.01 16 31 H 0.39 6.94 8.34 -40.82 -0.34 6.60 16 32 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.13 0.79 7.94 -52.49 -0.42 0.38 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 38 H 0.14 1.05 7.16 -52.49 -0.38 0.68 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -33.45 329.87 -8.40 -41.86 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.07 Total: 5.08 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.43 Total: 1.34 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.02 Total: -52.58 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.05 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.45 -8.40 -41.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426423942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.298 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds