Wall clock time and date at job start Tue Mar 31 2020 02:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46903 * 2 1 4 4 C 1.50695 * 109.47279 * 119.99758 * 2 1 3 5 5 C 1.38221 * 120.01336 * 16.04506 * 4 2 1 6 6 C 1.38218 * 120.02832 * 179.71946 * 5 4 2 7 7 C 1.38279 * 120.04671 * 0.54700 * 6 5 4 8 8 C 1.38170 * 120.02647 * 359.72720 * 7 6 5 9 9 C 1.38439 * 120.01200 * 196.31039 * 4 2 1 10 10 F 1.35094 * 120.02802 * 0.02912 * 9 4 2 11 11 N 1.46504 * 109.46774 * 240.00202 * 2 1 3 12 12 C 1.46498 * 119.99855 * 303.87556 * 11 2 1 13 13 C 1.34773 * 119.99930 * 123.88249 * 11 2 1 14 14 O 1.21593 * 120.00112 * 359.97438 * 13 11 2 15 15 N 1.34774 * 119.99991 * 179.72370 * 13 11 2 16 16 C 1.46500 * 120.00292 * 180.27312 * 15 13 11 17 17 C 1.50698 * 109.47304 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00264 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00068 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99859 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00193 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47235 * 89.99824 * 21 19 17 23 23 H 1.48496 * 109.47385 * 210.00224 * 21 19 17 24 24 H 1.48497 * 109.47146 * 330.00165 * 21 19 17 25 25 H 1.08998 * 109.46576 * 300.00220 * 1 2 3 26 26 H 1.08997 * 109.47113 * 59.99949 * 1 2 3 27 27 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.98473 * 359.97438 * 5 4 2 29 29 H 1.07997 * 119.97922 * 180.26879 * 6 5 4 30 30 H 1.07997 * 119.98254 * 179.74271 * 7 6 5 31 31 H 1.07997 * 120.01094 * 180.02562 * 8 7 6 32 32 H 1.08994 * 109.47108 * 264.88263 * 12 11 2 33 33 H 1.08998 * 109.46847 * 24.88548 * 12 11 2 34 34 H 1.09001 * 109.46853 * 144.88112 * 12 11 2 35 35 H 0.97004 * 119.99963 * 0.26840 * 15 13 11 36 36 H 1.09001 * 109.47398 * 300.00127 * 16 15 13 37 37 H 1.08998 * 109.47182 * 59.99854 * 16 15 13 38 38 H 0.97001 * 119.99507 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 1.1784 -1.5144 1.9617 6 6 1.6404 -2.1707 3.0870 7 6 2.9542 -2.0147 3.4890 8 6 3.8082 -1.2069 2.7629 9 6 3.3480 -0.5534 1.6320 10 9 4.1820 0.2370 0.9215 11 7 2.0183 -0.6906 -1.1963 12 6 1.5957 -2.0660 -1.4718 13 6 2.8564 -0.0607 -2.0431 14 8 3.2069 1.0810 -1.8146 15 7 3.3100 -0.6979 -3.1407 16 6 4.2257 -0.0152 -4.0581 17 6 4.5796 -0.9393 -5.1947 18 1 4.1643 -1.9357 -5.2299 19 6 5.4344 -0.5132 -6.1891 20 7 5.9413 0.6996 -6.1454 21 14 5.8736 -1.6589 -7.5975 22 1 4.8981 -1.4810 -8.7030 23 1 7.2393 -1.3413 -8.0865 24 1 5.8325 -3.0653 -7.1228 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.1509 -1.6332 1.6512 29 1 0.9736 -2.8022 3.6552 30 1 3.3129 -2.5247 4.3708 31 1 4.8344 -1.0856 3.0769 32 1 2.3426 -2.7597 -1.0861 33 1 0.6383 -2.2560 -0.9865 34 1 1.4916 -2.2054 -2.5478 35 1 3.0302 -1.6086 -3.3231 36 1 3.7444 0.8794 -4.4531 37 1 5.1328 0.2663 -3.5234 38 1 6.5424 0.9994 -6.8452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426429162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:00 Heat of formation + Delta-G solvation = -44.056635 kcal Electronic energy + Delta-G solvation = -22020.454744 eV Core-core repulsion = 18584.728269 eV Total energy + Delta-G solvation = -3435.726475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.65386 -39.96916 -38.78355 -35.88221 -34.13896 -32.78659 -31.74788 -30.57279 -29.18556 -27.09691 -26.68893 -24.17150 -22.61034 -22.45604 -20.82228 -19.09046 -18.02984 -17.64541 -16.38787 -16.18377 -15.98277 -15.65827 -15.24089 -14.98577 -14.67707 -14.22313 -13.99619 -13.60693 -13.23473 -13.06414 -12.89857 -12.42978 -12.32713 -12.21384 -12.10062 -11.98525 -11.77355 -11.68513 -11.03764 -10.97313 -10.87534 -10.83896 -10.24733 -9.40035 -9.31919 -9.06791 -8.70754 -8.67683 -8.36819 -7.68354 -6.10940 -4.17300 1.02164 1.09864 3.15537 3.27340 3.33392 3.36141 3.63012 3.96982 4.27646 4.35306 4.52890 4.59882 4.79881 4.87396 5.03835 5.15359 5.21401 5.24979 5.26389 5.27718 5.55203 5.62416 5.73068 5.83548 5.93020 5.95719 5.99388 6.13110 6.24861 6.26594 6.78958 6.82796 7.19133 7.57419 7.60076 7.63920 7.91266 8.07205 8.81116 8.96789 9.38626 9.53535 10.99366 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026682 B = 0.004027 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.147390 B = 6951.985088 C = 7139.122741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.194 3.806 3 H 0.113 0.887 4 C -0.131 4.131 5 C -0.085 4.085 6 C -0.138 4.138 7 C -0.092 4.092 8 C -0.161 4.161 9 C 0.121 3.879 10 F -0.122 7.122 11 N -0.633 5.633 12 C 0.082 3.918 13 C 0.696 3.304 14 O -0.592 6.592 15 N -0.728 5.728 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.386 0.614 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 -7.804 18.284 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.090 3.910 3 H 0.130 0.870 4 C -0.133 4.133 5 C -0.104 4.104 6 C -0.156 4.156 7 C -0.110 4.110 8 C -0.180 4.180 9 C 0.101 3.899 10 F -0.100 7.100 11 N -0.372 5.372 12 C -0.061 4.061 13 C 0.397 3.603 14 O -0.470 6.470 15 N -0.381 5.381 16 C 0.146 3.854 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.219 0.781 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.137 -6.771 18.236 22.415 hybrid contribution 0.413 -1.014 -0.968 1.462 sum -10.724 -7.785 17.268 21.767 Atomic orbital electron populations 1.22210 0.94511 1.02205 1.02880 1.19534 0.93609 0.97385 0.80497 0.86965 1.20408 0.92872 1.01155 0.98891 1.21065 0.99756 0.95063 0.94482 1.21157 0.95998 1.00896 0.97597 1.20991 0.93476 0.97362 0.99217 1.21201 1.01393 0.99764 0.95614 1.17729 0.88141 0.92613 0.91412 1.91635 1.70400 1.70951 1.76999 1.47091 1.51083 1.14705 1.24329 1.21601 0.99963 0.83120 1.01465 1.16085 0.79097 0.84758 0.80379 1.90863 1.62714 1.17333 1.76101 1.45821 1.50532 1.17581 1.24140 1.18972 0.87494 0.92707 0.86274 1.21222 1.29134 1.00042 1.07522 0.92058 1.24940 0.95548 0.95341 0.98166 1.69989 1.31271 1.17067 1.33947 0.86421 0.77815 0.80722 0.81967 1.20496 1.21023 1.19800 0.91261 0.91446 0.91973 0.84774 0.85560 0.85333 0.84880 0.93362 0.91194 0.91379 0.78057 0.95782 0.95759 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 7.95 37.16 0.30 -1.36 16 2 C 0.19 2.79 2.57 -69.08 -0.18 2.62 16 3 H 0.11 1.96 6.81 -51.93 -0.35 1.61 16 4 C -0.13 -1.69 4.96 -104.56 -0.52 -2.21 16 5 C -0.09 -0.82 9.10 -39.59 -0.36 -1.18 16 6 C -0.14 -1.17 10.05 -39.57 -0.40 -1.57 16 7 C -0.09 -0.84 10.04 -39.59 -0.40 -1.23 16 8 C -0.16 -1.87 10.03 -39.51 -0.40 -2.27 16 9 C 0.12 1.78 7.25 -39.42 -0.29 1.49 16 10 F -0.12 -2.28 16.73 2.25 0.04 -2.24 16 11 N -0.63 -10.44 2.75 -181.01 -0.50 -10.94 16 12 C 0.08 1.03 9.48 59.85 0.57 1.60 16 13 C 0.70 15.33 8.28 -86.92 -0.72 14.61 16 14 O -0.59 -15.43 15.67 5.28 0.08 -15.34 16 15 N -0.73 -16.56 5.41 -66.42 -0.36 -16.92 16 16 C 0.27 7.42 5.43 -5.19 -0.03 7.39 16 17 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.52 5.20 -51.93 -0.27 0.25 16 28 H 0.13 0.98 5.96 -52.49 -0.31 0.66 16 29 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.66 6.23 -51.93 -0.32 0.34 16 34 H 0.07 0.84 6.65 -51.93 -0.35 0.49 16 35 H 0.39 7.63 6.17 -40.82 -0.25 7.38 16 36 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -34.47 322.38 -7.77 -42.25 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.77 Total: 3.92 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.83 Total: 4.15 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.12 Total: -53.80 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.08 Total: -15.34 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.47 -7.77 -42.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426429162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.811 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds