Wall clock time and date at job start Tue Mar 31 2020 02:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 C 1.38223 * 120.01388 * 264.72917 * 5 4 2 7 7 C 1.38222 * 120.02717 * 179.72159 * 6 5 4 8 8 C 1.38272 * 120.04451 * 0.55103 * 7 6 5 9 9 C 1.38169 * 120.03266 * 359.72295 * 8 7 6 10 10 C 1.38436 * 120.00990 * 84.99843 * 5 4 2 11 11 F 1.35095 * 120.02840 * 359.97438 * 10 5 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47138 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00213 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00019 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99907 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47496 * 89.99791 * 21 19 17 23 23 H 1.48494 * 109.47146 * 210.00132 * 21 19 17 24 24 H 1.48504 * 109.46915 * 329.99781 * 21 19 17 25 25 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 28 28 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 29 29 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 30 30 H 1.08002 * 119.98694 * 359.97438 * 6 5 4 31 31 H 1.07992 * 119.97604 * 180.25214 * 7 6 5 32 32 H 1.08008 * 119.97912 * 179.74660 * 8 7 6 33 33 H 1.07994 * 120.01670 * 180.02562 * 9 8 7 34 34 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 35 35 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 36 36 H 1.09000 * 109.47602 * 299.99940 * 16 15 13 37 37 H 1.09006 * 109.46868 * 59.99976 * 16 15 13 38 38 H 0.97010 * 119.99768 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.3290 -1.6348 0.8118 7 6 5.7066 -1.5350 0.8646 8 6 6.2988 -0.4201 1.4289 9 6 5.5141 0.5980 1.9354 10 6 4.1337 0.5017 1.8778 11 9 3.3654 1.4969 2.3722 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8526 1.1602 -2.4130 15 7 2.5857 -0.6562 -3.4603 16 6 2.7203 0.0733 -4.7236 17 6 3.2321 -0.8599 -5.7905 18 1 3.4362 -1.8932 -5.5516 19 6 3.4387 -0.3949 -7.0719 20 7 3.8849 -1.2094 -8.0031 21 14 3.0851 1.3921 -7.4854 22 1 4.3079 2.2039 -7.2599 23 1 2.6754 1.4992 -8.9087 24 1 1.9905 1.8940 -6.6162 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -0.2618 2.1369 29 1 1.7517 -1.7715 1.2056 30 1 3.8675 -2.5082 0.3752 31 1 6.3208 -2.3304 0.4693 32 1 7.3754 -0.3451 1.4733 33 1 5.9769 1.4688 2.3756 34 1 2.2490 -1.6318 -1.1527 35 1 2.8167 -1.5973 -3.4167 36 1 1.7486 0.4676 -5.0209 37 1 3.4226 0.8970 -4.5944 38 1 4.0306 -0.8821 -8.9046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426432096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:22 Heat of formation + Delta-G solvation = -63.467278 kcal Electronic energy + Delta-G solvation = -21578.610318 eV Core-core repulsion = 18142.042134 eV Total energy + Delta-G solvation = -3436.568184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.98598 -39.75730 -38.93969 -36.15212 -34.12560 -32.58559 -32.11838 -30.79196 -30.24171 -27.52340 -26.68381 -23.01990 -22.74106 -21.89622 -20.81262 -20.18958 -18.25362 -17.70423 -16.64898 -16.36449 -16.05284 -15.94614 -15.52477 -14.85317 -14.49053 -14.41882 -13.94797 -13.87785 -13.46246 -13.38627 -12.98924 -12.71235 -12.43907 -12.39379 -12.31917 -12.02404 -11.92085 -11.55192 -11.03923 -10.98853 -10.92642 -10.73017 -9.93427 -9.52868 -9.41462 -9.10874 -8.87122 -8.74545 -8.68701 -7.96528 -6.18522 -4.19943 1.01281 1.05610 3.27555 3.31331 3.38128 3.43171 3.46189 3.87758 4.12841 4.36896 4.41016 4.55662 4.75690 4.84376 4.95411 5.08161 5.16099 5.17421 5.23750 5.33028 5.48996 5.60471 5.70943 5.78019 5.88740 5.96460 6.08002 6.18325 6.25341 6.30301 6.74213 6.79226 6.87845 7.15976 7.29339 7.46142 7.62756 8.31918 8.73424 8.86164 9.27899 9.44318 10.93487 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019123 B = 0.004289 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.861627 B = 6526.487740 C = 7109.803713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.087 0.913 4 C -0.088 4.088 5 C -0.110 4.110 6 C -0.085 4.085 7 C -0.125 4.125 8 C -0.096 4.096 9 C -0.153 4.153 10 C 0.099 3.901 11 F -0.138 7.138 12 N -0.748 5.748 13 C 0.696 3.304 14 O -0.603 6.603 15 N -0.723 5.723 16 C 0.239 3.761 17 C -0.541 4.541 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.894 5.894 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.260 1.260 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.390 0.610 35 H 0.391 0.609 36 H 0.022 0.978 37 H 0.017 0.983 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -2.188 22.292 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.062 3.938 3 H 0.105 0.895 4 C -0.126 4.126 5 C -0.111 4.111 6 C -0.103 4.103 7 C -0.143 4.143 8 C -0.114 4.114 9 C -0.172 4.172 10 C 0.080 3.920 11 F -0.117 7.117 12 N -0.405 5.405 13 C 0.396 3.604 14 O -0.483 6.483 15 N -0.376 5.376 16 C 0.116 3.884 17 C -0.579 4.579 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.532 5.532 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.184 1.184 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.223 0.777 35 H 0.224 0.776 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.220 -1.041 22.013 22.039 hybrid contribution 0.077 0.172 -0.304 0.358 sum 0.297 -0.869 21.709 21.728 Atomic orbital electron populations 1.22201 0.95330 1.01959 1.02645 1.20623 0.93543 0.97279 0.82387 0.89509 1.20905 0.90409 1.02404 0.98858 1.19859 0.96628 0.94149 1.00440 1.20929 0.93524 0.98000 0.97877 1.21225 0.94891 0.98553 0.99674 1.21008 1.00053 0.93147 0.97236 1.21137 0.91803 1.00951 1.03283 1.17558 0.88828 0.86381 0.99228 1.91485 1.75352 1.59490 1.85357 1.45177 1.73084 1.13241 1.08969 1.16110 0.78698 0.85206 0.80400 1.90859 1.57945 1.14652 1.84831 1.45374 1.69017 1.13711 1.09452 1.19336 0.96557 0.92702 0.79799 1.21097 1.45580 0.97893 0.93290 0.90339 1.24770 0.94022 0.97928 0.95866 1.69882 1.44917 1.35507 1.02856 0.86823 0.79850 0.85140 0.77926 1.19884 1.20953 1.18439 0.92583 0.91991 0.91523 0.89208 0.89851 0.85181 0.85257 0.85171 0.84931 0.77718 0.77608 0.95990 0.96491 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 37.16 0.35 -1.56 16 2 C 0.17 2.16 2.56 -67.93 -0.17 1.99 16 3 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.09 -0.85 4.66 -27.88 -0.13 -0.98 16 5 C -0.11 -1.20 4.89 -104.55 -0.51 -1.71 16 6 C -0.09 -0.83 9.38 -39.59 -0.37 -1.20 16 7 C -0.13 -1.19 10.05 -39.57 -0.40 -1.58 16 8 C -0.10 -0.92 10.04 -39.59 -0.40 -1.31 16 9 C -0.15 -1.63 10.03 -39.51 -0.40 -2.02 16 10 C 0.10 1.19 7.24 -39.42 -0.29 0.91 16 11 F -0.14 -1.77 16.57 2.25 0.04 -1.73 16 12 N -0.75 -10.75 4.69 -58.68 -0.27 -11.03 16 13 C 0.70 13.94 8.53 -86.92 -0.74 13.19 16 14 O -0.60 -14.61 16.01 5.28 0.08 -14.52 16 15 N -0.72 -15.10 5.55 -66.41 -0.37 -15.47 16 16 C 0.24 6.04 4.50 -5.19 -0.02 6.02 16 17 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 18 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 21 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.09 0.79 7.79 -51.93 -0.40 0.39 16 29 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 30 H 0.13 0.99 8.03 -52.49 -0.42 0.57 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.39 4.44 8.41 -40.82 -0.34 4.09 16 35 H 0.39 7.11 8.34 -40.82 -0.34 6.77 16 36 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 37 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -33.86 329.37 -8.17 -42.03 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.20 Total: 6.05 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.51 Total: -1.49 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.13 Total: -52.43 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.08 Total: -14.52 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.86 -8.17 -42.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.441 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds