Wall clock time and date at job start Tue Mar 31 2020 01:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 C 1.50708 * 109.47199 * 240.00275 * 2 1 3 5 5 H 1.08005 * 119.99606 * 240.00105 * 4 2 1 6 6 C 1.37873 * 120.00094 * 59.99890 * 4 2 1 7 7 N 1.31520 * 119.99868 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00012 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47246 * 89.99969 * 8 6 4 10 10 H 1.48502 * 109.46987 * 210.00082 * 8 6 4 11 11 H 1.48500 * 109.47096 * 329.99552 * 8 6 4 12 12 C 1.53005 * 109.47274 * 120.00610 * 2 1 3 13 13 N 1.46899 * 109.46624 * 299.99616 * 12 2 1 14 14 C 1.46902 * 111.00115 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47150 * 179.97438 * 14 13 12 16 16 C 1.33644 * 122.74710 * 95.02855 * 15 14 13 17 17 S 1.76200 * 107.92352 * 179.73069 * 16 15 14 18 18 C 1.70979 * 90.28153 * 359.97438 * 17 16 15 19 19 C 1.50701 * 124.91569 * 180.02562 * 18 17 16 20 20 C 1.53002 * 117.49646 * 8.60029 * 19 18 17 21 21 C 1.53003 * 117.49678 * 299.97555 * 19 18 17 22 22 N 1.29028 * 110.16576 * 0.02562 * 18 17 16 23 23 H 1.08997 * 109.46948 * 299.99880 * 1 2 3 24 24 H 1.08997 * 109.47216 * 59.99594 * 1 2 3 25 25 H 1.09002 * 109.47504 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47234 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47291 * 300.00360 * 3 2 1 28 28 H 1.08997 * 109.46995 * 60.00149 * 3 2 1 29 29 H 0.96994 * 119.99660 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.47244 * 180.02562 * 12 2 1 31 31 H 1.08997 * 109.47267 * 59.99802 * 12 2 1 32 32 H 1.00899 * 111.00138 * 56.04624 * 13 12 2 33 33 H 1.09000 * 109.46807 * 59.99917 * 14 13 12 34 34 H 1.08998 * 109.46729 * 300.00173 * 14 13 12 35 35 H 1.08001 * 126.03803 * 359.72486 * 16 15 14 36 36 H 1.08994 * 115.54881 * 154.30676 * 19 18 17 37 37 H 1.08991 * 117.50122 * 359.97438 * 20 19 18 38 38 H 1.08994 * 117.49679 * 145.02323 * 20 19 18 39 39 H 1.08995 * 117.49838 * 214.97384 * 21 19 18 40 40 H 1.09001 * 117.50034 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1616 -4.4120 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 6 2.0400 -0.7214 1.2492 13 7 1.5504 -0.0289 2.4486 14 6 2.0218 -0.6947 3.6703 15 6 1.5013 0.0426 4.8771 16 6 0.3828 -0.3145 5.5156 17 16 0.1470 0.7993 6.8604 18 6 1.5761 1.6338 6.4309 19 6 2.1269 2.8327 7.1592 20 6 1.4674 3.2183 8.4849 21 6 1.2421 4.0784 7.2396 22 7 2.1147 1.0886 5.3929 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7087 1.1613 -3.4844 30 1 3.1300 -0.7210 1.2494 31 1 1.6767 -1.7490 1.2491 32 1 0.5438 0.0412 2.4401 33 1 3.1117 -0.6941 3.6868 34 1 1.6587 -1.7223 3.6872 35 1 -0.2625 -1.1399 5.2535 36 1 3.2025 2.9843 7.0689 37 1 0.6350 2.6052 8.8300 38 1 2.1092 3.6236 9.2670 39 1 1.7357 5.0495 7.2027 40 1 0.2618 4.0309 6.7653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459728800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:04 Heat of formation + Delta-G solvation = 48.908567 kcal Electronic energy + Delta-G solvation = -19290.129020 eV Core-core repulsion = 16424.646995 eV Total energy + Delta-G solvation = -2865.482025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97147 -38.70200 -38.03992 -35.57665 -33.10765 -31.17781 -27.69782 -27.52782 -27.24751 -26.39732 -24.61125 -23.33626 -22.06853 -20.75020 -20.34470 -18.76298 -17.87173 -17.10599 -16.91042 -16.21595 -16.03302 -15.77111 -15.25633 -14.91852 -14.63693 -14.23616 -14.06713 -13.92238 -13.60125 -13.19469 -13.03715 -12.93291 -12.59013 -12.52080 -12.44558 -12.15861 -12.11350 -12.04074 -11.77289 -11.49022 -11.33305 -10.99728 -10.62277 -10.55345 -10.35070 -10.30116 -9.64249 -9.18194 -7.96972 -6.14251 -0.28481 0.39945 0.73044 1.42360 1.44359 1.53143 1.71958 2.46614 2.79820 3.06608 3.25099 3.54441 3.78239 3.85674 4.02378 4.17664 4.26354 4.41802 4.49891 4.53972 4.63682 4.72993 4.79468 4.85430 4.93644 5.01073 5.05619 5.14577 5.15962 5.18490 5.26728 5.40622 5.51470 5.69360 5.74684 6.11408 6.20783 6.31424 6.46498 6.58781 6.87858 6.94925 7.53395 9.01519 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.003262 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.528729 B = 8580.483126 C = 8860.983960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.061 3.939 3 C -0.103 4.103 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.905 5.905 8 Si 0.947 3.053 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.091 3.909 13 N -0.684 5.684 14 C 0.134 3.866 15 C 0.064 3.936 16 C -0.265 4.265 17 S 0.162 5.838 18 C 0.066 3.934 19 C -0.112 4.112 20 C -0.147 4.147 21 C -0.157 4.157 22 N -0.495 5.495 23 H 0.029 0.971 24 H 0.056 0.944 25 H 0.021 0.979 26 H 0.008 0.992 27 H 0.049 0.951 28 H 0.027 0.973 29 H 0.257 0.743 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.339 0.661 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.196 0.804 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.720 1.978 23.168 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.060 3.940 3 C -0.161 4.161 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.038 4.038 13 N -0.316 5.316 14 C 0.002 3.998 15 C -0.067 4.067 16 C -0.405 4.405 17 S 0.418 5.582 18 C -0.211 4.211 19 C -0.134 4.134 20 C -0.185 4.185 21 C -0.196 4.196 22 N -0.209 5.209 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.213 0.787 36 H 0.147 0.853 37 H 0.121 0.879 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.551 2.855 23.597 23.906 hybrid contribution 0.247 -1.714 -2.141 2.754 sum -2.304 1.141 21.456 21.609 Atomic orbital electron populations 1.21650 0.98044 0.98244 0.99824 1.18133 0.92505 0.92626 0.90727 1.21454 0.96945 0.98698 0.99041 1.21438 1.31317 1.11970 0.91847 0.93465 1.25563 0.95322 0.95624 1.01263 1.69976 1.37463 1.23621 1.23309 0.85735 0.78742 0.78399 0.79777 1.20321 1.21155 1.19766 1.21850 0.98370 0.94197 0.89376 1.60433 1.16303 1.54188 1.00716 1.20387 1.00238 0.93877 0.85271 1.20161 0.93661 0.94109 0.98812 1.27191 1.03296 1.08112 1.01860 1.83387 1.24612 1.22155 1.28071 1.26625 0.96924 1.01490 0.96102 1.20549 0.99863 0.91775 1.01233 1.23264 1.02675 1.02062 0.90464 1.23239 1.00449 0.94776 1.01160 1.65948 1.34539 1.10219 1.10235 0.95185 0.92530 0.95993 0.97284 0.93213 0.95423 0.93310 0.93343 0.96354 0.84219 0.90872 0.92269 0.78694 0.85343 0.87935 0.85083 0.86002 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 7.92 71.98 0.57 -5.17 16 2 C 0.06 3.01 0.57 -52.93 -0.03 2.98 16 3 C -0.10 -5.32 8.09 71.98 0.58 -4.74 16 4 C -0.53 -28.94 8.01 25.60 0.21 -28.74 16 5 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 6 C 0.02 1.17 5.15 84.65 0.44 1.60 16 7 N -0.90 -51.35 9.35 21.45 0.20 -51.15 16 8 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.09 3.87 4.59 86.31 0.40 4.27 16 13 N -0.68 -25.63 5.70 -517.92 -2.95 -28.59 16 14 C 0.13 4.23 6.12 85.56 0.52 4.76 16 15 C 0.06 1.92 6.25 41.52 0.26 2.18 16 16 C -0.26 -6.26 11.12 66.78 0.74 -5.52 16 17 S 0.16 3.18 21.94 -56.49 -1.24 1.94 16 18 C 0.07 1.64 7.04 88.52 0.62 2.27 16 19 C -0.11 -2.11 6.33 -11.54 -0.07 -2.18 16 20 C -0.15 -1.69 10.01 30.60 0.31 -1.38 16 21 C -0.16 -2.25 10.23 30.60 0.31 -1.94 16 22 N -0.49 -15.77 10.53 -179.40 -1.89 -17.66 16 23 H 0.03 1.27 6.57 -2.39 -0.02 1.26 16 24 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 27 H 0.05 2.78 6.07 -2.39 -0.01 2.77 16 28 H 0.03 1.33 7.60 -2.39 -0.02 1.31 16 29 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 30 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.34 12.37 6.76 -89.70 -0.61 11.76 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 35 H 0.20 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.10 1.08 7.22 -2.39 -0.02 1.07 16 38 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -63.54 335.61 1.42 -62.12 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.42 Total: 19.08 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 4.85 Total: -31.61 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -4.64 Total: -97.39 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.24 Total: 1.94 kcal Total: -63.54 1.42 -62.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459728800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.027 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds