Wall clock time and date at job start Tue Mar 31 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46588 * 2 1 4 4 N 1.46891 * 109.47303 * 119.99783 * 2 1 3 5 5 C 1.46903 * 111.00162 * 160.50555 * 4 2 1 6 6 C 1.50700 * 109.46757 * 293.95530 * 5 4 2 7 7 H 1.07995 * 120.00572 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99463 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00259 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99807 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47274 * 90.00052 * 10 8 6 12 12 H 1.48496 * 109.47255 * 210.00391 * 10 8 6 13 13 H 1.48499 * 109.47403 * 330.00362 * 10 8 6 14 14 C 1.46900 * 111.00119 * 284.45876 * 4 2 1 15 15 C 1.50704 * 109.47276 * 77.83724 * 14 4 2 16 16 S 1.76198 * 126.03989 * 251.59381 * 15 14 4 17 17 C 1.70973 * 90.28284 * 179.97438 * 16 15 14 18 18 N 1.29024 * 110.16810 * 359.97438 * 17 16 15 19 19 C 1.31782 * 117.12579 * 359.72136 * 18 17 16 20 20 C 1.50700 * 122.74984 * 180.33229 * 19 18 17 21 21 C 1.52997 * 117.49873 * 8.81879 * 20 19 18 22 22 C 1.52997 * 60.00326 * 252.51366 * 21 20 19 23 23 H 1.09000 * 109.47234 * 51.60749 * 1 2 3 24 24 H 1.09001 * 109.46504 * 171.60111 * 1 2 3 25 25 H 1.08989 * 109.47426 * 291.59591 * 1 2 3 26 26 H 1.08994 * 109.47194 * 240.00355 * 2 1 3 27 27 H 1.09004 * 109.47329 * 59.99837 * 3 2 1 28 28 H 1.08997 * 109.47002 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47387 * 300.00351 * 3 2 1 30 30 H 1.08997 * 109.46594 * 53.95579 * 5 4 2 31 31 H 1.08998 * 109.47297 * 173.95500 * 5 4 2 32 32 H 0.97001 * 119.99652 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47233 * 197.83404 * 14 4 2 34 34 H 1.09003 * 109.47242 * 317.83776 * 14 4 2 35 35 H 1.08000 * 124.91400 * 180.02562 * 17 16 15 36 36 H 1.09001 * 115.54718 * 154.53642 * 20 19 18 37 37 H 1.08999 * 117.50111 * 0.02562 * 21 20 19 38 38 H 1.09003 * 117.49480 * 145.01980 * 21 20 19 39 39 H 1.09005 * 117.49881 * 252.51486 * 22 21 20 40 40 H 1.08993 * 117.51951 * 107.47953 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.4141 -1.1215 1.0272 6 6 3.4865 -2.1738 -0.0491 7 1 2.5869 -2.4918 -0.5549 8 6 4.7016 -2.7299 -0.3887 9 7 5.7973 -2.3424 0.2269 10 14 4.7914 -4.0349 -1.7222 11 1 5.0025 -3.3828 -3.0396 12 1 5.9216 -4.9554 -1.4388 13 1 3.5213 -4.8040 -1.7486 14 6 1.8724 0.1525 2.3920 15 6 0.4356 0.1341 2.8463 16 16 -0.7117 1.4645 2.7103 17 6 -1.9233 0.5056 3.4423 18 7 -1.4543 -0.6618 3.7284 19 6 -0.1955 -0.8965 3.4170 20 6 0.4786 -2.2170 3.6869 21 6 -0.4018 -3.3764 4.1574 22 6 0.5489 -2.6902 5.1402 23 1 -0.3634 0.6382 -0.8055 24 1 -0.3632 -1.0167 -0.1501 25 1 -0.3634 0.3782 0.9554 26 1 1.8934 -0.5137 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 4.0247 -0.2654 0.7401 31 1 3.7856 -1.5346 1.9649 32 1 6.6521 -2.7339 -0.0118 33 1 2.5103 -0.2297 3.1891 34 1 2.1644 1.1747 2.1515 35 1 -2.9350 0.8299 3.6364 36 1 1.3217 -2.4556 3.0386 37 1 -1.4687 -3.1843 4.2712 38 1 -0.1381 -4.3783 3.8183 39 1 1.4381 -3.2406 5.4478 40 1 0.1080 -2.0463 5.9011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517473981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:58 Heat of formation + Delta-G solvation = 84.060924 kcal Electronic energy + Delta-G solvation = -20568.085788 eV Core-core repulsion = 17704.128084 eV Total energy + Delta-G solvation = -2863.957705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01926 -37.77339 -36.13599 -32.89300 -31.67196 -30.39139 -27.33435 -26.72379 -25.53187 -23.41538 -22.43909 -22.10865 -22.02698 -19.27951 -18.29099 -17.59912 -16.37265 -15.96230 -15.31903 -14.66470 -14.52453 -14.33592 -14.05008 -13.83615 -13.46146 -13.00516 -12.47681 -12.25459 -12.06421 -12.02129 -11.54853 -11.41211 -11.22786 -11.00768 -10.88787 -10.74803 -10.60692 -10.52285 -10.44021 -10.10426 -10.01914 -9.80412 -9.46302 -9.26504 -8.51690 -8.44277 -8.29096 -7.26874 -6.05418 -4.06275 0.93832 1.53428 1.91662 2.95093 3.30234 3.37064 3.41550 4.24631 4.41034 4.46677 4.89291 5.06083 5.18697 5.29905 5.33485 5.37032 5.50756 5.57343 5.62653 5.81109 5.90985 5.95752 6.03488 6.11127 6.12008 6.17622 6.28264 6.37149 6.43440 6.46162 6.51303 6.67598 6.82012 6.86940 7.25864 7.34934 7.77820 7.95043 8.05035 8.17283 8.50002 9.01570 9.58011 11.05164 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.006054 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.797803 B = 4623.888069 C = 5502.400360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.082 3.918 3 C -0.182 4.182 4 N -0.519 5.519 5 C 0.193 3.807 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.114 3.886 15 C -0.171 4.171 16 S 0.096 5.904 17 C 0.004 3.996 18 N -0.462 5.462 19 C 0.101 3.899 20 C -0.077 4.077 21 C -0.163 4.163 22 C -0.171 4.171 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.051 0.949 30 H -0.005 1.005 31 H 0.031 0.969 32 H 0.261 0.739 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.193 0.807 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.029 6.796 6.210 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.027 4.027 3 C -0.241 4.241 4 N -0.243 5.243 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.017 4.017 15 C -0.291 4.291 16 S 0.349 5.651 17 C -0.295 4.295 18 N -0.175 5.175 19 C -0.029 4.029 20 C -0.098 4.098 21 C -0.201 4.201 22 C -0.209 4.209 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.012 0.988 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.210 0.790 36 H 0.158 0.842 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.481 6.985 6.180 15.581 hybrid contribution 0.891 -0.653 -0.743 1.331 sum -11.590 6.332 5.437 14.282 Atomic orbital electron populations 1.22368 0.96286 1.01329 1.01768 1.21596 0.94055 0.91686 0.95388 1.22457 1.01918 0.99007 1.00702 1.62264 1.25209 1.36835 1.00026 1.19777 0.80996 0.94809 0.97570 1.21125 0.93235 1.20972 1.19028 0.91840 1.24957 0.95655 0.97081 0.96746 1.69954 0.98448 1.43384 1.41969 0.86540 0.77705 0.81576 0.81877 1.20793 1.21288 1.19771 1.20624 0.87741 0.97826 0.95469 1.25722 1.01842 0.95090 1.06496 1.83920 1.04886 1.19442 1.56820 1.28081 1.04334 0.93094 1.03960 1.66020 1.13073 1.18928 1.19519 1.19190 0.88125 0.95877 0.99752 1.20656 1.01782 0.89380 0.97979 1.22870 0.97698 0.96398 1.03125 1.22924 1.01950 1.03807 0.92203 0.93757 0.92917 0.92002 0.88837 0.93191 0.92218 0.92947 0.98756 0.95138 0.92938 0.89428 0.92980 0.79036 0.84221 0.88327 0.88787 0.88550 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.14 37.16 0.34 -2.31 16 2 C 0.08 1.53 2.72 -67.71 -0.18 1.35 16 3 C -0.18 -3.04 8.28 37.16 0.31 -2.73 16 4 N -0.52 -10.48 3.97 -229.52 -0.91 -11.39 16 5 C 0.19 4.72 4.62 -4.97 -0.02 4.70 16 6 C -0.50 -13.59 8.24 -34.44 -0.28 -13.87 16 7 H 0.06 1.72 7.31 -52.49 -0.38 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 10 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.11 1.99 4.49 -4.97 -0.02 1.96 16 15 C -0.17 -2.71 4.14 -35.92 -0.15 -2.86 16 16 S 0.10 1.22 20.79 -107.50 -2.24 -1.01 16 17 C 0.00 0.05 12.23 51.58 0.63 0.68 16 18 N -0.46 -7.10 9.83 -11.90 -0.12 -7.21 16 19 C 0.10 1.65 6.36 -84.22 -0.54 1.12 16 20 C -0.08 -1.27 5.78 -91.77 -0.53 -1.80 16 21 C -0.16 -2.37 10.08 -26.73 -0.27 -2.64 16 22 C -0.17 -2.40 10.23 -26.73 -0.27 -2.68 16 23 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.97 2.54 -29.18 -0.07 0.90 16 26 H 0.09 2.00 6.58 -51.93 -0.34 1.65 16 27 H 0.05 0.77 5.97 -51.93 -0.31 0.45 16 28 H 0.06 1.09 7.04 -51.93 -0.37 0.73 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H -0.01 -0.14 6.94 -51.93 -0.36 -0.50 16 31 H 0.03 0.80 7.81 -51.93 -0.41 0.39 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 33 H 0.09 1.55 7.70 -51.93 -0.40 1.15 16 34 H 0.05 0.87 5.10 -51.93 -0.26 0.61 16 35 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.14 2.62 7.42 -51.93 -0.39 2.24 16 37 H 0.10 1.44 7.73 -51.93 -0.40 1.04 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -28.72 327.86 -9.48 -38.20 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.79 Total: 2.99 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.09 Total: -17.62 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.29 Total: -43.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.24 Total: -1.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.72 -9.48 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517473981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.261 kcal (2) G-P(sol) polarization free energy of solvation -28.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds