Wall clock time and date at job start Tue Mar 31 2020 02:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47001 * 2 1 4 4 C 1.50694 * 109.47157 * 240.00114 * 2 1 3 5 5 H 1.07995 * 119.99969 * 240.00286 * 4 2 1 6 6 C 1.37882 * 120.00120 * 59.99513 * 4 2 1 7 7 N 1.31513 * 119.99847 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00167 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46759 * 59.99870 * 8 6 4 10 10 H 1.48496 * 109.47077 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46930 * 300.00153 * 8 6 4 12 12 N 1.46497 * 109.47556 * 119.99771 * 2 1 3 13 13 C 1.34778 * 120.00254 * 275.00435 * 12 2 1 14 14 O 1.21599 * 119.99560 * 359.97438 * 13 12 2 15 15 C 1.47519 * 120.00303 * 179.97438 * 13 12 2 16 16 C 1.39773 * 120.06187 * 0.02562 * 15 13 12 17 17 C 1.37648 * 119.96951 * 179.67914 * 16 15 13 18 18 C 1.39143 * 120.09460 * 0.57596 * 17 16 15 19 19 N 1.39199 * 119.93602 * 179.72232 * 18 17 16 20 20 C 1.46901 * 110.99912 * 59.72669 * 19 18 17 21 21 C 1.46898 * 110.99714 * 295.76977 * 19 18 17 22 22 C 1.39378 * 120.12815 * 359.44399 * 18 17 16 23 23 F 1.35097 * 119.98794 * 180.27336 * 22 18 17 24 24 C 1.37797 * 120.02671 * 0.25391 * 22 18 17 25 25 H 1.09003 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47252 * 299.99782 * 1 2 3 27 27 H 1.08996 * 109.47825 * 60.00133 * 1 2 3 28 28 H 0.96998 * 119.99912 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99743 * 94.99583 * 12 2 1 30 30 H 1.08002 * 120.01713 * 0.02562 * 16 15 13 31 31 H 1.08000 * 119.95688 * 180.31853 * 17 16 15 32 32 H 1.09002 * 109.47401 * 59.99860 * 20 19 18 33 33 H 1.09001 * 109.46874 * 299.99872 * 20 19 18 34 34 H 1.09004 * 109.46970 * 180.02562 * 20 19 18 35 35 H 1.09007 * 109.46909 * 183.95484 * 21 19 18 36 36 H 1.08998 * 109.47110 * 303.95092 * 21 19 18 37 37 H 1.09002 * 109.47061 * 63.95674 * 21 19 18 38 38 H 1.08007 * 120.04560 * 179.97438 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5884 -1.1313 6 6 1.6991 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5202 -4.0076 10 1 1.8257 -0.4206 -5.2204 11 1 3.8062 -1.1208 -4.0082 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8582 1.1617 2.4116 15 6 2.6384 -0.7137 3.5618 16 6 2.9713 -2.0698 3.5005 17 6 3.4358 -2.7152 4.6240 18 6 3.5632 -2.0226 5.8240 19 7 4.0278 -2.6800 6.9596 20 6 5.3751 -3.2224 6.7397 21 6 3.0958 -3.7371 7.3742 22 6 3.2320 -0.6703 5.8899 23 9 3.3619 0.0008 7.0551 24 6 2.7723 -0.0175 4.7667 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7093 1.1618 -3.4844 29 1 2.2490 -1.6317 1.1526 30 1 2.8695 -2.6096 2.5706 31 1 3.6979 -3.7618 4.5751 32 1 6.0602 -2.4086 6.5021 33 1 5.3509 -3.9304 5.9112 34 1 5.7138 -3.7312 7.6422 35 1 3.4471 -4.1876 8.3026 36 1 2.1060 -3.3081 7.5303 37 1 3.0429 -4.5000 6.5974 38 1 2.5152 1.0303 4.8175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522117965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:06 Heat of formation + Delta-G solvation = -66.457201 kcal Electronic energy + Delta-G solvation = -21424.625743 eV Core-core repulsion = 17987.927907 eV Total energy + Delta-G solvation = -3436.697837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.87957 -41.35078 -40.10775 -37.48111 -36.74226 -34.42297 -31.97056 -31.69234 -30.19888 -28.52405 -27.35368 -26.34569 -23.82773 -23.70453 -22.40836 -21.21475 -19.79781 -18.21798 -17.87917 -17.59562 -17.14519 -16.86056 -16.77040 -16.13922 -15.84426 -15.69875 -15.39528 -15.17782 -14.92908 -14.46217 -14.10729 -13.81728 -13.71810 -13.40657 -13.04142 -12.99183 -12.95465 -12.80916 -12.71886 -12.64307 -12.42927 -12.26786 -12.15412 -11.13462 -10.96434 -10.59464 -10.15825 -9.92889 -9.69135 -9.59341 -8.17309 -6.35433 -0.47006 0.05729 1.46816 1.48975 1.56776 1.71458 2.26234 2.48851 2.62959 2.69082 3.13507 3.20345 3.65348 3.73708 3.94623 4.04501 4.18381 4.40471 4.45337 4.59773 4.62928 4.71235 4.84474 4.87452 4.91457 4.97773 4.99692 5.06022 5.07560 5.11880 5.41004 5.46826 5.56937 5.66543 5.84535 5.87896 6.07643 6.17372 6.70783 6.85588 7.28967 7.44709 8.89107 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028553 B = 0.003684 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.381314 B = 7597.982223 C = 8203.565491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.000 1.000 4 C -0.549 4.549 5 H 0.078 0.922 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.262 1.262 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.692 5.692 13 C 0.540 3.460 14 O -0.595 6.595 15 C -0.113 4.113 16 C -0.074 4.074 17 C -0.115 4.115 18 C 0.081 3.919 19 N -0.529 5.529 20 C 0.025 3.975 21 C 0.026 3.974 22 C 0.100 3.900 23 F -0.134 7.134 24 C -0.103 4.103 25 H 0.043 0.957 26 H 0.011 0.989 27 H 0.068 0.932 28 H 0.266 0.734 29 H 0.407 0.593 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -14.165 16.730 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.018 0.982 4 C -0.587 4.587 5 H 0.096 0.904 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.186 1.186 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.341 5.341 13 C 0.328 3.672 14 O -0.478 6.478 15 C -0.116 4.116 16 C -0.093 4.093 17 C -0.134 4.134 18 C -0.015 4.015 19 N -0.251 5.251 20 C -0.121 4.121 21 C -0.119 4.119 22 C 0.080 3.920 23 F -0.113 7.113 24 C -0.124 4.124 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.244 0.756 30 H 0.175 0.825 31 H 0.189 0.811 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.609 -12.889 17.043 22.367 hybrid contribution 0.022 -0.288 -1.321 1.352 sum 6.631 -13.177 15.723 21.559 Atomic orbital electron populations 1.21915 0.98104 0.99710 0.99659 1.18423 0.91279 0.92068 0.81620 0.98188 1.21506 1.32831 1.13767 0.90558 0.90433 1.25819 0.94789 0.95546 1.02395 1.70050 1.36916 1.23926 1.24753 0.85366 0.78647 0.78753 0.77385 1.18622 1.21382 1.19521 1.46182 1.64296 1.14284 1.09308 1.18657 0.78001 0.86362 0.84207 1.90726 1.53368 1.17843 1.85885 1.19756 1.03925 0.95384 0.92569 1.21511 0.95538 0.91861 1.00383 1.21705 0.99018 1.01830 0.90881 1.19038 0.99218 0.91472 0.91724 1.59385 1.04810 1.30539 1.30372 1.22577 0.87171 0.99596 1.02724 1.22560 0.95622 0.91955 1.01786 1.17444 1.03049 0.90049 0.81481 1.91478 1.93663 1.80112 1.46040 1.21101 0.99046 1.01293 0.90925 0.93749 0.96999 0.91303 0.92505 0.75646 0.82463 0.81133 0.91921 0.93103 0.88798 0.88850 0.91985 0.93103 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 13.89 2.56 44.24 0.11 14.00 16 3 H 0.00 0.01 7.58 -2.38 -0.02 -0.01 16 4 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.78 5.30 84.66 0.45 1.22 16 7 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 8 Si 0.97 40.99 29.54 68.60 2.03 43.02 16 9 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 10 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 12 N -0.69 -28.47 5.02 -449.29 -2.25 -30.72 16 13 C 0.54 22.39 7.73 86.69 0.67 23.06 16 14 O -0.60 -30.30 16.00 -4.03 -0.06 -30.37 16 15 C -0.11 -3.53 5.88 -20.08 -0.12 -3.65 16 16 C -0.07 -1.64 9.53 22.50 0.21 -1.42 16 17 C -0.11 -2.03 8.58 22.35 0.19 -1.84 16 18 C 0.08 1.74 4.72 38.46 0.18 1.92 16 19 N -0.53 -9.37 4.80 -744.84 -3.58 -12.94 16 20 C 0.03 0.32 9.34 127.69 1.19 1.51 16 21 C 0.03 0.33 9.32 127.69 1.19 1.52 16 22 C 0.10 2.71 7.30 22.44 0.16 2.88 16 23 F -0.13 -3.88 17.07 44.97 0.77 -3.11 16 24 C -0.10 -3.19 9.56 22.54 0.22 -2.97 16 25 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 28 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.41 13.45 6.56 -92.71 -0.61 12.84 16 30 H 0.16 2.82 6.39 -2.91 -0.02 2.80 16 31 H 0.17 1.81 7.01 -2.91 -0.02 1.79 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.49 7.08 -2.39 -0.02 0.47 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 37 H 0.05 0.48 7.47 -2.39 -0.02 0.47 16 38 H 0.13 4.49 7.64 -2.91 -0.02 4.47 16 Total: -1.00 -68.82 323.53 2.97 -65.85 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.48 Total: 18.40 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.35 Total: 1.91 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -5.59 Total: -95.69 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.37 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.77 Total: -3.11 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -68.82 2.97 -65.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522117965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.610 kcal (2) G-P(sol) polarization free energy of solvation -68.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds