Wall clock time and date at job start Tue Mar 31 2020 02:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46863 * 2 1 4 4 C 1.50693 * 109.47480 * 120.00397 * 2 1 3 5 5 H 1.08003 * 119.99515 * 119.99551 * 4 2 1 6 6 C 1.37874 * 120.00296 * 300.00511 * 4 2 1 7 7 N 1.31512 * 119.99762 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00237 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46905 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47322 * 119.99328 * 8 6 4 11 11 H 1.48496 * 109.46809 * 239.99671 * 8 6 4 12 12 N 1.46498 * 109.46749 * 240.00934 * 2 1 3 13 13 C 1.34778 * 120.00432 * 84.99927 * 12 2 1 14 14 O 1.21593 * 119.99923 * 359.97438 * 13 12 2 15 15 C 1.47524 * 120.00048 * 180.02562 * 13 12 2 16 16 C 1.39768 * 120.06517 * 359.97142 * 15 13 12 17 17 C 1.37648 * 119.97036 * 179.74750 * 16 15 13 18 18 C 1.39143 * 120.09460 * 0.55443 * 17 16 15 19 19 N 1.39199 * 119.93602 * 179.72232 * 18 17 16 20 20 C 1.46901 * 110.99912 * 59.72669 * 19 18 17 21 21 C 1.46898 * 110.99714 * 295.76977 * 19 18 17 22 22 C 1.39378 * 120.12815 * 359.44399 * 18 17 16 23 23 F 1.35102 * 119.98938 * 180.29565 * 22 18 17 24 24 C 1.37800 * 120.02916 * 0.27959 * 22 18 17 25 25 H 1.08994 * 109.47321 * 59.99501 * 1 2 3 26 26 H 1.09007 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46965 * 299.99394 * 1 2 3 28 28 H 0.96998 * 120.00121 * 180.02562 * 7 6 4 29 29 H 0.97004 * 119.99974 * 264.99634 * 12 2 1 30 30 H 1.08003 * 120.01544 * 0.02562 * 16 15 13 31 31 H 1.07999 * 119.95567 * 180.27413 * 17 16 15 32 32 H 1.09002 * 109.47401 * 59.99860 * 20 19 18 33 33 H 1.09001 * 109.46874 * 299.99872 * 20 19 18 34 34 H 1.09004 * 109.46970 * 180.02562 * 20 19 18 35 35 H 1.09006 * 109.46770 * 179.97438 * 21 19 18 36 36 H 1.09001 * 109.47456 * 300.00005 * 21 19 18 37 37 H 1.09000 * 109.46814 * 60.00311 * 21 19 18 38 38 H 1.07995 * 120.04819 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1310 6 6 1.6994 -0.2396 2.4826 7 7 0.9436 0.8299 2.6034 8 14 2.3227 -1.1199 4.0078 9 1 3.1477 -2.2865 3.6034 10 1 3.1475 -0.1862 4.8159 11 1 1.1681 -1.5871 4.8163 12 7 2.0183 -0.6904 -1.1963 13 6 2.1470 -0.0180 -2.3572 14 8 1.8574 1.1617 -2.4118 15 6 2.6381 -0.7134 -3.5620 16 6 2.9709 -2.0695 -3.5009 17 6 3.4240 -2.7178 -4.6274 18 6 3.5623 -2.0222 -5.8246 19 7 4.0263 -2.6797 -6.9604 20 6 3.1423 -3.7964 -7.3203 21 6 5.4083 -3.1412 -6.7737 22 6 3.2316 -0.6698 -5.8901 23 9 3.3612 0.0014 -7.0554 24 6 2.7720 -0.0170 -4.7669 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.7095 1.1614 3.4845 29 1 2.2490 -1.6316 -1.1529 30 1 2.8683 -2.6097 -2.5712 31 1 3.6769 -3.7667 -4.5810 32 1 2.1405 -3.4166 -7.5210 33 1 3.1025 -4.5085 -6.4960 34 1 3.5283 -4.2929 -8.2106 35 1 5.7458 -3.6518 -7.6757 36 1 6.0539 -2.2852 -6.5771 37 1 5.4506 -3.8296 -5.9296 38 1 2.5153 1.0307 -4.8174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522117966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:13 Heat of formation + Delta-G solvation = -66.501945 kcal Electronic energy + Delta-G solvation = -21424.972119 eV Core-core repulsion = 17988.272342 eV Total energy + Delta-G solvation = -3436.699777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.87879 -41.35126 -40.10879 -37.48106 -36.74329 -34.42381 -31.97099 -31.69220 -30.19900 -28.52299 -27.35736 -26.34737 -23.82954 -23.70581 -22.40853 -21.21387 -19.79890 -18.22311 -17.88073 -17.59517 -17.15046 -16.86052 -16.76794 -16.13198 -15.84663 -15.69603 -15.38997 -15.18163 -14.92583 -14.46799 -14.09930 -13.82737 -13.72238 -13.41964 -13.03590 -12.99547 -12.96052 -12.81173 -12.73115 -12.63624 -12.43589 -12.28370 -12.11036 -11.11213 -10.96463 -10.61377 -10.15721 -9.92869 -9.68986 -9.59298 -8.17712 -6.35559 -0.47019 0.05709 1.46065 1.47072 1.59018 1.71456 2.26237 2.48564 2.62931 2.69112 3.13381 3.20303 3.65350 3.73664 3.94546 4.04504 4.18679 4.40620 4.45038 4.60053 4.62713 4.71277 4.84555 4.87391 4.91507 4.97659 4.99832 5.05938 5.07545 5.11892 5.41071 5.46780 5.57257 5.66522 5.84568 5.87815 6.07645 6.17354 6.71151 6.85552 7.28973 7.44660 8.89127 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028517 B = 0.003684 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.626288 B = 7598.127400 C = 8200.919722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.078 0.922 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.257 1.257 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.692 5.692 13 C 0.540 3.460 14 O -0.595 6.595 15 C -0.113 4.113 16 C -0.074 4.074 17 C -0.115 4.115 18 C 0.081 3.919 19 N -0.529 5.529 20 C 0.025 3.975 21 C 0.026 3.974 22 C 0.100 3.900 23 F -0.134 7.134 24 C -0.103 4.103 25 H 0.011 0.989 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.266 0.734 29 H 0.407 0.593 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -14.149 -16.742 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.018 0.982 4 C -0.584 4.584 5 H 0.096 0.904 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.181 1.181 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.341 5.341 13 C 0.328 3.672 14 O -0.478 6.478 15 C -0.116 4.116 16 C -0.093 4.093 17 C -0.134 4.134 18 C -0.015 4.015 19 N -0.251 5.251 20 C -0.121 4.121 21 C -0.120 4.120 22 C 0.080 3.920 23 F -0.113 7.113 24 C -0.124 4.124 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.244 0.756 30 H 0.175 0.825 31 H 0.189 0.811 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.713 -12.887 -17.068 22.415 hybrid contribution 0.048 -0.258 1.347 1.373 sum 6.761 -13.145 -15.721 21.579 Atomic orbital electron populations 1.21916 0.98102 0.99720 0.99658 1.18434 0.91287 0.92084 0.81640 0.98171 1.21560 1.32657 1.13679 0.90527 0.90429 1.25818 0.94822 0.95560 1.02404 1.70062 1.37013 1.23963 1.24616 0.85261 0.78070 0.78536 0.78250 1.18050 1.21151 1.20480 1.46185 1.64298 1.14283 1.09308 1.18655 0.78007 0.86356 0.84202 1.90725 1.53356 1.17858 1.85875 1.19759 1.03908 0.95395 0.92571 1.21509 0.95580 0.91848 1.00355 1.21701 0.99103 1.01853 0.90780 1.19038 0.99310 0.91468 0.91636 1.59384 1.04697 1.29373 1.31655 1.22579 0.96530 0.90971 1.01981 1.22566 0.86292 1.00329 1.02779 1.17446 1.02964 0.90129 0.81480 1.91480 1.93664 1.80122 1.46030 1.21103 0.99051 1.01284 0.90925 0.96996 0.93733 0.91313 0.92526 0.75646 0.82466 0.81129 0.91877 0.93105 0.88800 0.88751 0.92001 0.93203 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 13.84 2.56 44.24 0.11 13.96 16 3 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 4 C -0.55 -28.24 8.73 25.60 0.22 -28.02 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.21 11.32 21.45 0.24 -51.96 16 8 Si 0.97 41.03 29.54 68.60 2.03 43.05 16 9 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 12 N -0.69 -28.45 5.02 -449.29 -2.25 -30.70 16 13 C 0.54 22.38 7.73 86.69 0.67 23.05 16 14 O -0.60 -30.28 16.00 -4.01 -0.06 -30.35 16 15 C -0.11 -3.53 5.88 -20.08 -0.12 -3.65 16 16 C -0.07 -1.64 9.53 22.50 0.21 -1.42 16 17 C -0.11 -2.03 8.53 22.35 0.19 -1.84 16 18 C 0.08 1.74 4.73 38.46 0.18 1.92 16 19 N -0.53 -9.37 4.80 -744.84 -3.58 -12.95 16 20 C 0.03 0.31 9.34 127.69 1.19 1.51 16 21 C 0.03 0.33 9.38 127.69 1.20 1.53 16 22 C 0.10 2.71 7.30 22.44 0.16 2.88 16 23 F -0.13 -3.88 17.07 44.97 0.77 -3.11 16 24 C -0.10 -3.19 9.56 22.55 0.22 -2.97 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.04 2.03 8.14 -2.38 -0.02 2.02 16 27 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 28 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.41 13.45 6.56 -92.70 -0.61 12.84 16 30 H 0.16 2.82 6.39 -2.91 -0.02 2.80 16 31 H 0.17 1.82 6.99 -2.91 -0.02 1.80 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.48 7.08 -2.39 -0.02 0.46 16 34 H 0.09 0.83 8.12 -2.38 -0.02 0.81 16 35 H 0.09 0.86 8.12 -2.38 -0.02 0.84 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.49 7.33 -2.39 -0.02 0.48 16 38 H 0.13 4.49 7.64 -2.91 -0.02 4.47 16 Total: -1.00 -68.83 323.37 2.98 -65.86 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.48 Total: 18.18 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.36 Total: 1.97 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -5.59 Total: -95.61 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.06 Total: -30.35 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.77 Total: -3.11 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -68.83 2.98 -65.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522117966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.647 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds