Wall clock time and date at job start Tue Mar 31 2020 02:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00146 * 2 1 4 4 O 1.21290 * 119.99911 * 184.37148 * 3 2 1 5 5 C 1.50705 * 120.00092 * 4.36381 * 3 2 1 6 6 H 1.09000 * 109.46757 * 40.00743 * 5 3 2 7 7 N 1.46901 * 109.46890 * 159.99888 * 5 3 2 8 8 C 1.52990 * 109.47340 * 280.00226 * 5 3 2 9 9 C 1.52999 * 109.47162 * 174.99699 * 8 5 3 10 10 C 1.50695 * 109.47052 * 180.02562 * 9 8 5 11 11 H 1.07995 * 120.00497 * 0.02562 * 10 9 8 12 12 C 1.37886 * 120.00187 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99645 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00421 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46736 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47225 * 119.99705 * 14 12 10 17 17 H 1.48499 * 109.47243 * 240.00170 * 14 12 10 18 18 C 1.40030 * 119.99836 * 179.97438 * 2 1 3 19 19 C 1.38847 * 120.04621 * 294.80334 * 18 2 1 20 20 C 1.38109 * 119.95914 * 180.27516 * 19 18 2 21 21 C 1.38484 * 120.04244 * 359.49313 * 20 19 18 22 22 F 1.35103 * 119.95591 * 180.22838 * 21 20 19 23 23 C 1.38476 * 120.08755 * 0.51084 * 21 20 19 24 24 C 1.38111 * 120.04436 * 359.74197 * 23 21 20 25 25 H 1.08998 * 109.47444 * 270.00266 * 1 2 3 26 26 H 1.08999 * 109.46836 * 30.00203 * 1 2 3 27 27 H 1.09006 * 109.47304 * 150.00149 * 1 2 3 28 28 H 1.00906 * 111.00102 * 60.00618 * 7 5 3 29 29 H 1.00902 * 111.00085 * 183.95290 * 7 5 3 30 30 H 1.08996 * 109.47540 * 295.00206 * 8 5 3 31 31 H 1.09004 * 109.47468 * 55.00080 * 8 5 3 32 32 H 1.09004 * 109.47471 * 300.00359 * 9 8 5 33 33 H 1.08994 * 109.47056 * 60.00200 * 9 8 5 34 34 H 0.96998 * 120.00238 * 179.97438 * 13 12 10 35 35 H 1.08004 * 120.02427 * 0.02562 * 19 18 2 36 36 H 1.07999 * 119.98721 * 179.72843 * 20 19 18 37 37 H 1.08000 * 119.97600 * 179.72167 * 23 21 20 38 38 H 1.08000 * 120.02348 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3491 1.1686 -0.0801 5 6 1.3887 2.4704 0.0993 6 1 0.5706 2.3653 0.8120 7 7 2.3017 3.5274 0.5544 8 6 0.8245 2.8401 -1.2739 9 6 -0.0406 4.0958 -1.1487 10 6 -0.5967 4.4595 -2.5012 11 1 -0.3575 3.8553 -3.3637 12 6 -1.4111 5.5638 -2.6375 13 7 -1.7029 6.2993 -1.5870 14 14 -2.1011 6.0143 -4.3139 15 1 -1.6282 5.0335 -5.3236 16 1 -3.5850 5.9926 -4.2605 17 1 -1.6392 7.3746 -4.6901 18 6 2.1651 -1.2127 0.0005 19 6 2.0760 -2.0664 1.0919 20 6 2.7718 -3.2594 1.0930 21 6 3.5496 -3.6093 0.0020 22 9 4.2259 -4.7789 0.0029 23 6 3.6399 -2.7593 -1.0875 24 6 2.9498 -1.5630 -1.0902 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 3.0693 3.6444 -0.0900 29 1 1.8086 4.3971 0.6909 30 1 1.6457 3.0320 -1.9644 31 1 0.2176 2.0169 -1.6510 32 1 -0.8618 3.9039 -0.4581 33 1 0.5663 4.9189 -0.7716 34 1 -2.2754 7.0764 -1.6829 35 1 1.4662 -1.7958 1.9413 36 1 2.7063 -3.9217 1.9435 37 1 4.2506 -3.0320 -1.9355 38 1 3.0207 -0.9001 -1.9399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564831141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:35 Heat of formation + Delta-G solvation = -56.469017 kcal Electronic energy + Delta-G solvation = -21364.009421 eV Core-core repulsion = 17927.744705 eV Total energy + Delta-G solvation = -3436.264717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.06463 -40.61416 -38.59206 -35.61991 -35.43630 -32.91278 -31.38671 -30.12004 -29.86039 -26.91427 -26.44502 -24.20791 -23.26234 -22.30438 -20.55262 -19.34762 -17.92651 -17.53843 -16.95990 -16.61001 -16.27332 -15.74574 -14.96436 -14.87812 -14.62427 -14.39988 -14.31156 -13.79104 -13.68475 -13.35124 -13.16855 -12.92834 -12.68212 -12.45317 -12.20720 -12.14504 -11.77510 -11.33922 -11.11390 -10.99387 -10.71189 -10.04033 -10.00229 -9.42523 -9.34030 -9.30642 -9.25127 -8.49896 -8.44262 -8.23691 -6.13673 -4.17072 0.86472 1.01955 2.72636 2.84861 3.22828 3.31279 3.34411 3.34716 4.06057 4.34942 4.53711 4.62917 4.74880 5.00796 5.02289 5.10084 5.15020 5.22724 5.38521 5.41620 5.49249 5.64514 5.66988 5.68693 5.88340 5.95737 6.17529 6.21685 6.38076 6.43548 6.78414 6.83363 7.18811 7.44353 7.48811 7.55532 7.82693 7.84011 8.24247 8.27728 8.89087 9.48361 10.97165 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.003349 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.311628 B = 8358.409946 C = 8665.037784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.581 5.581 3 C 0.529 3.471 4 O -0.522 6.522 5 C 0.078 3.922 6 H 0.100 0.900 7 N -0.831 5.831 8 C -0.142 4.142 9 C 0.025 3.975 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.141 3.859 19 C -0.095 4.095 20 C -0.144 4.144 21 C 0.090 3.910 22 F -0.141 7.141 23 C -0.142 4.142 24 C -0.077 4.077 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.346 0.654 29 H 0.356 0.644 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 -17.132 4.601 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.312 5.312 3 C 0.318 3.682 4 O -0.395 6.395 5 C -0.037 4.037 6 H 0.118 0.882 7 N -0.363 5.363 8 C -0.181 4.181 9 C -0.013 4.013 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.531 5.531 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C 0.050 3.950 19 C -0.114 4.114 20 C -0.163 4.163 21 C 0.071 3.929 22 F -0.120 7.120 23 C -0.162 4.162 24 C -0.097 4.097 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.172 0.828 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.770 -17.412 5.261 19.083 hybrid contribution -0.722 0.585 -1.789 2.016 sum 5.047 -16.827 3.473 17.908 Atomic orbital electron populations 1.22155 0.77678 1.04846 1.02692 1.45497 1.07318 1.03521 1.74897 1.21147 0.87933 0.84878 0.74227 1.90664 1.14274 1.86981 1.47593 1.21488 0.94483 0.88841 0.98930 0.88229 1.58745 1.12973 1.10730 1.53861 1.22494 1.00370 1.01658 0.93601 1.19106 0.93987 0.90550 0.97610 1.21201 1.29717 1.11109 0.94256 0.92640 1.25012 0.96283 0.96263 0.96722 1.69953 1.37018 1.17113 1.29009 0.86532 0.78803 0.78420 0.84242 1.19744 1.20917 1.20936 1.17653 0.96418 0.87201 0.93743 1.21075 0.99449 0.93668 0.97231 1.20970 0.98760 0.98276 0.98320 1.17709 0.95757 0.83157 0.96283 1.91493 1.78211 1.45463 1.96845 1.21025 1.02069 0.94515 0.98541 1.21151 0.95564 0.95217 0.97731 0.92052 0.88590 0.90766 0.84086 0.82833 0.92509 0.92119 0.96240 0.96328 0.92884 0.84666 0.84407 0.84401 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 9.70 59.85 0.58 1.30 16 2 N -0.58 -7.79 2.94 -120.80 -0.35 -8.15 16 3 C 0.53 8.68 6.80 -10.99 -0.07 8.60 16 4 O -0.52 -10.09 15.74 5.55 0.09 -10.00 16 5 C 0.08 1.27 2.38 -68.87 -0.16 1.11 16 6 H 0.10 1.53 7.40 -51.93 -0.38 1.14 16 7 N -0.83 -13.92 8.94 -5.66 -0.05 -13.97 16 8 C -0.14 -2.63 4.46 -26.74 -0.12 -2.75 16 9 C 0.02 0.57 4.74 -27.89 -0.13 0.44 16 10 C -0.52 -13.90 9.11 -34.44 -0.31 -14.22 16 11 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 14 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.14 1.80 4.89 -83.66 -0.41 1.40 16 19 C -0.09 -1.01 9.81 -39.40 -0.39 -1.40 16 20 C -0.14 -1.44 10.02 -39.54 -0.40 -1.83 16 21 C 0.09 1.00 7.30 -39.40 -0.29 0.71 16 22 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 23 C -0.14 -1.57 10.02 -39.54 -0.40 -1.96 16 24 C -0.08 -0.96 9.22 -39.40 -0.36 -1.33 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.10 1.13 4.68 -51.93 -0.24 0.89 16 27 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 28 H 0.35 5.88 8.58 -39.29 -0.34 5.54 16 29 H 0.36 5.93 7.55 -39.29 -0.30 5.63 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.06 6.08 -51.93 -0.32 0.75 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -30.73 324.85 -7.08 -37.81 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.85 Total: 8.28 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.56 Total: -8.43 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.33 Total: -46.75 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.73 -7.08 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564831141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.663 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds