Wall clock time and date at job start Tue Mar 31 2020 02:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47267 * 2 1 4 4 C 1.50704 * 109.47231 * 239.99976 * 2 1 3 5 5 H 1.07999 * 119.99796 * 245.70417 * 4 2 1 6 6 C 1.37880 * 120.00017 * 65.69947 * 4 2 1 7 7 N 1.31508 * 119.99656 * 197.36762 * 6 4 2 8 8 Si 1.86802 * 119.99708 * 17.64474 * 6 4 2 9 9 H 1.48499 * 109.46581 * 179.72545 * 8 6 4 10 10 H 1.48500 * 109.47043 * 299.72070 * 8 6 4 11 11 H 1.48499 * 109.47262 * 59.72491 * 8 6 4 12 12 N 1.46903 * 109.47111 * 120.00311 * 2 1 3 13 13 C 1.46903 * 110.99456 * 274.99556 * 12 2 1 14 14 C 1.53006 * 109.46924 * 179.97438 * 13 12 2 15 15 C 1.50701 * 109.46935 * 180.02562 * 14 13 12 16 16 O 1.21290 * 120.00096 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99840 * 180.02562 * 15 14 13 18 18 C 1.39918 * 120.00202 * 185.29769 * 17 15 14 19 19 C 1.38905 * 120.06005 * 212.71723 * 18 17 15 20 20 C 1.38100 * 119.97785 * 179.67821 * 19 18 17 21 21 C 1.38270 * 120.09861 * 0.61645 * 20 19 18 22 22 C 1.38491 * 120.11245 * 359.68267 * 21 20 19 23 23 F 1.35092 * 119.99036 * 180.02562 * 22 21 20 24 24 C 1.38360 * 120.01606 * 359.97438 * 22 21 20 25 25 H 1.08994 * 109.46968 * 175.70282 * 1 2 3 26 26 H 1.08998 * 109.46852 * 295.70635 * 1 2 3 27 27 H 1.08997 * 109.46847 * 55.70668 * 1 2 3 28 28 H 0.96993 * 120.00540 * 355.22381 * 7 6 4 29 29 H 1.00900 * 110.99942 * 151.04993 * 12 2 1 30 30 H 1.08993 * 109.47881 * 300.00323 * 13 12 2 31 31 H 1.09000 * 109.46983 * 60.00490 * 13 12 2 32 32 H 1.09002 * 109.47048 * 300.00193 * 14 13 12 33 33 H 1.08994 * 109.46910 * 60.00019 * 14 13 12 34 34 H 0.97001 * 120.00057 * 5.29105 * 17 15 14 35 35 H 1.08001 * 120.00826 * 359.97433 * 19 18 17 36 36 H 1.08001 * 119.95455 * 180.32201 * 20 19 18 37 37 H 1.07994 * 119.94217 * 179.70109 * 21 20 19 38 38 H 1.08001 * 120.04341 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5752 -1.6391 -1.1340 6 6 1.7989 -0.1748 -2.4794 7 7 1.9201 -0.9277 -3.5508 8 14 1.3180 1.6221 -2.6499 9 1 1.1314 1.9503 -4.0861 10 1 0.0496 1.8667 -1.9174 11 1 2.3906 2.4777 -2.0819 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5951 -0.5332 3.5745 15 6 2.6590 0.4055 4.7517 16 8 2.3276 1.5649 4.6215 17 7 3.0853 -0.0432 5.9490 18 6 3.0402 0.7965 7.0673 19 6 4.0057 0.6858 8.0598 20 6 3.9634 1.5199 9.1596 21 6 2.9539 2.4569 9.2809 22 6 1.9857 2.5665 8.2967 23 9 1.0008 3.4831 8.4175 24 6 2.0276 1.7380 7.1894 25 1 -0.3633 -1.0247 -0.0770 26 1 -0.3633 0.4458 0.9260 27 1 -0.3633 0.5790 -0.8490 28 1 2.2405 -1.8396 -3.4691 29 1 2.9173 -1.1205 1.0287 30 1 2.7588 1.0462 2.1182 31 1 1.0871 0.6163 2.5525 32 1 1.9183 -1.3565 3.8030 33 1 3.5903 -0.9273 3.3691 34 1 3.4232 -0.9483 6.0354 35 1 4.7919 -0.0491 7.9690 36 1 4.7173 1.4371 9.9285 37 1 2.9205 3.1047 10.1444 38 1 1.2730 1.8233 6.4214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585116393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:20 Heat of formation + Delta-G solvation = -82.745158 kcal Electronic energy + Delta-G solvation = -20750.162516 eV Core-core repulsion = 17312.758381 eV Total energy + Delta-G solvation = -3437.404135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.96861 -41.66155 -39.50448 -37.96405 -35.86266 -34.96081 -32.98398 -31.64242 -30.87002 -29.25353 -26.86763 -24.94982 -23.85312 -23.03994 -21.62130 -21.41400 -19.69870 -19.27579 -18.28919 -17.48110 -17.18142 -16.91359 -16.72209 -16.63380 -16.35815 -15.86216 -15.39829 -15.22471 -14.80862 -14.52515 -14.37507 -14.12161 -13.82932 -13.51251 -13.36009 -13.12226 -12.86516 -12.57735 -12.48795 -12.38616 -12.22404 -11.82007 -11.57688 -11.52710 -11.02016 -10.98115 -10.42675 -9.86256 -9.28730 -9.25698 -8.75659 -6.38932 0.05231 0.17882 1.43830 1.45986 1.48948 1.68873 1.86483 2.44451 2.62378 3.03708 3.19444 3.45013 3.72047 3.83897 4.02110 4.04364 4.12227 4.22580 4.36328 4.47135 4.53657 4.62015 4.82853 4.89002 4.90677 4.94951 5.01646 5.09051 5.12960 5.19567 5.27182 5.37449 5.56850 5.75352 5.91330 6.01171 6.23172 6.31819 6.61473 6.77562 7.02334 7.37880 8.62610 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033033 B = 0.002942 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.429011 B = 9514.635397 C =10012.994791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.188 3.812 3 H -0.010 1.010 4 C -0.605 4.605 5 H 0.031 0.969 6 C -0.016 4.016 7 N -0.936 5.936 8 Si 1.080 2.920 9 H -0.286 1.286 10 H -0.245 1.245 11 H -0.271 1.271 12 N -0.679 5.679 13 C 0.073 3.927 14 C -0.122 4.122 15 C 0.517 3.483 16 O -0.561 6.561 17 N -0.659 5.659 18 C 0.164 3.836 19 C -0.147 4.147 20 C -0.062 4.062 21 C -0.171 4.171 22 C 0.091 3.909 23 F -0.153 7.153 24 C -0.189 4.189 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.255 0.745 29 H 0.338 0.662 30 H 0.014 0.986 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.435 0.565 35 H 0.168 0.832 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 1.809 29.394 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.078 3.922 3 H 0.008 0.992 4 C -0.643 4.643 5 H 0.050 0.950 6 C -0.215 4.215 7 N -0.571 5.571 8 Si 0.902 3.098 9 H -0.212 1.212 10 H -0.170 1.170 11 H -0.197 1.197 12 N -0.310 5.310 13 C -0.057 4.057 14 C -0.162 4.162 15 C 0.306 3.694 16 O -0.438 6.438 17 N -0.306 5.306 18 C 0.069 3.931 19 C -0.167 4.167 20 C -0.080 4.080 21 C -0.190 4.190 22 C 0.071 3.929 23 F -0.131 7.131 24 C -0.210 4.210 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.156 0.844 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.275 0.725 35 H 0.186 0.814 36 H 0.195 0.805 37 H 0.174 0.826 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.463 3.493 28.295 28.857 hybrid contribution 0.955 -1.048 0.224 1.436 sum 5.419 2.445 28.519 29.132 Atomic orbital electron populations 1.22039 0.97251 1.00549 0.99452 1.19293 0.93000 0.91865 0.88012 0.99205 1.22300 1.39900 1.09034 0.93102 0.95049 1.27007 0.94316 1.08200 0.91968 1.70974 1.44127 1.09534 1.32503 0.83613 0.78699 0.71127 0.76372 1.21183 1.17025 1.19672 1.60514 1.32691 1.32937 1.04850 1.21647 1.00142 0.93469 0.90491 1.21542 1.06110 0.98221 0.90289 1.21245 0.75038 0.88484 0.84595 1.90745 1.48131 1.20271 1.84670 1.43454 1.63856 1.17374 1.05911 1.17663 0.93928 0.92868 0.88602 1.21390 0.98100 1.02924 0.94273 1.21296 0.97023 0.92036 0.97616 1.21466 0.95342 1.02675 0.99533 1.17822 0.88550 0.89960 0.96565 1.91463 1.60824 1.64741 1.96104 1.21069 1.01176 1.00065 0.98683 0.93975 0.93712 0.93500 0.93627 0.84422 0.96766 0.92205 0.85562 0.85881 0.72474 0.81429 0.80535 0.82612 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 9.11 71.98 0.66 -5.41 16 2 C 0.19 8.97 2.19 44.17 0.10 9.07 16 3 H -0.01 -0.47 6.45 -2.39 -0.02 -0.48 16 4 C -0.61 -34.19 8.82 25.60 0.23 -33.96 16 5 H 0.03 1.91 7.92 -2.91 -0.02 1.88 16 6 C -0.02 -0.91 5.34 84.66 0.45 -0.46 16 7 N -0.94 -58.51 13.70 21.45 0.29 -58.21 16 8 Si 1.08 50.98 26.42 68.60 1.81 52.79 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 10 H -0.25 -10.50 5.51 99.48 0.55 -9.95 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.68 -26.83 6.30 -495.43 -3.12 -29.95 16 13 C 0.07 2.42 4.77 86.30 0.41 2.83 16 14 C -0.12 -2.66 5.96 29.85 0.18 -2.48 16 15 C 0.52 12.39 7.57 87.66 0.66 13.05 16 16 O -0.56 -18.98 13.65 -3.06 -0.04 -19.02 16 17 N -0.66 -10.64 5.34 -303.53 -1.62 -12.26 16 18 C 0.16 3.07 6.28 38.15 0.24 3.31 16 19 C -0.15 -1.66 9.96 22.40 0.22 -1.43 16 20 C -0.06 -0.60 10.04 22.24 0.22 -0.38 16 21 C -0.17 -2.52 10.02 22.34 0.22 -2.30 16 22 C 0.09 2.05 7.30 22.36 0.16 2.22 16 23 F -0.15 -3.95 17.27 44.97 0.78 -3.18 16 24 C -0.19 -4.70 8.63 22.44 0.19 -4.51 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.78 7.37 -2.39 -0.02 1.76 16 27 H 0.05 2.12 4.81 -2.39 -0.01 2.11 16 28 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 29 H 0.34 13.01 8.26 -89.69 -0.74 12.27 16 30 H 0.01 0.52 8.01 -2.39 -0.02 0.50 16 31 H 0.06 2.15 7.33 -2.39 -0.02 2.13 16 32 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.43 3.23 8.82 -92.71 -0.82 2.41 16 35 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 36 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.12 3.58 6.39 -2.91 -0.02 3.56 16 Total: -1.00 -75.68 321.08 1.39 -74.29 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.66 Total: 16.00 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 3.95 Total: -20.46 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -4.45 Total: -100.42 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.04 Total: -19.02 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 1.81 Total: 52.79 kcal Total: -75.68 1.39 -74.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585116393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.456 kcal (2) G-P(sol) polarization free energy of solvation -75.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds