Wall clock time and date at job start Tue Mar 31 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00085 * 2 1 4 4 O 1.21275 * 119.99659 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99694 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.46723 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.47034 * 180.02562 * 6 5 3 8 8 C 1.52993 * 109.47159 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47218 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99959 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00254 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99678 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00156 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47188 * 60.00264 * 13 11 9 15 15 H 1.48503 * 109.47468 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47049 * 300.00428 * 13 11 9 17 17 C 1.39517 * 119.99801 * 179.97438 * 2 1 3 18 18 N 1.32328 * 119.70726 * 178.60242 * 17 2 1 19 19 C 1.31925 * 121.66104 * 179.97438 * 18 17 2 20 20 C 1.38092 * 120.89923 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.32230 * 0.30003 * 20 19 18 22 22 C 1.38556 * 118.47392 * 359.45523 * 21 20 19 23 23 F 1.35101 * 120.47293 * 180.26233 * 22 21 20 24 24 H 1.08998 * 109.47222 * 240.20315 * 1 2 3 25 25 H 1.08998 * 109.47085 * 0.20260 * 1 2 3 26 26 H 1.09004 * 109.47077 * 120.20542 * 1 2 3 27 27 H 1.08995 * 109.47824 * 299.99989 * 5 3 2 28 28 H 1.08997 * 109.47030 * 60.00792 * 5 3 2 29 29 H 1.09002 * 109.47535 * 300.00122 * 6 5 3 30 30 H 1.08999 * 109.47089 * 60.00430 * 6 5 3 31 31 H 1.08995 * 109.46817 * 300.00684 * 7 6 5 32 32 H 1.08999 * 109.46939 * 60.00207 * 7 6 5 33 33 H 1.09002 * 109.47300 * 300.00530 * 8 7 6 34 34 H 1.08999 * 109.47102 * 60.00214 * 8 7 6 35 35 H 0.97002 * 119.99691 * 180.02562 * 12 11 9 36 36 H 1.08002 * 119.55443 * 180.02562 * 19 18 17 37 37 H 1.07992 * 120.34002 * 180.02562 * 20 19 18 38 38 H 1.07998 * 120.76058 * 179.69881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3797 3.6352 0.0002 7 6 1.6146 4.9602 0.0002 8 6 2.6088 6.1231 0.0004 9 6 1.8554 7.4282 -0.0002 10 1 0.7754 7.4282 -0.0002 11 6 2.5448 8.6223 0.0003 12 7 3.8599 8.6222 0.0008 13 14 1.6108 10.2400 0.0003 14 1 0.7567 10.3184 1.2125 15 1 2.5758 11.3688 0.0003 16 1 0.7575 10.3189 -1.2125 17 6 2.1625 -1.2083 0.0005 18 7 3.4855 -1.2017 -0.0275 19 6 4.1836 -2.3211 -0.0276 20 6 3.5538 -3.5497 0.0023 21 6 2.1670 -3.6022 0.0265 22 6 1.4607 -2.4102 0.0313 23 9 0.1100 -2.4141 0.0599 24 1 -0.3633 -0.5107 0.8918 25 1 -0.3633 1.0276 -0.0036 26 1 -0.3633 -0.5170 -0.8882 27 1 0.7590 2.5299 -0.8907 28 1 0.7585 2.5302 0.8892 29 1 3.0057 3.5774 0.8906 30 1 3.0069 3.5774 -0.8893 31 1 0.9883 5.0181 -0.8899 32 1 0.9876 5.0177 0.8900 33 1 3.2356 6.0653 0.8903 34 1 3.2355 6.0654 -0.8896 35 1 4.3449 9.4623 0.0016 36 1 5.2625 -2.2761 -0.0506 37 1 4.1343 -4.4604 0.0024 38 1 1.6504 -4.5505 0.0452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588949220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:47 Heat of formation + Delta-G solvation = -37.688968 kcal Electronic energy + Delta-G solvation = -20977.627071 eV Core-core repulsion = 17542.176718 eV Total energy + Delta-G solvation = -3435.450352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.38083 -40.97648 -39.31065 -35.97889 -34.93355 -32.82097 -32.47229 -30.90803 -29.48558 -27.20933 -25.99097 -24.33986 -23.42556 -22.15079 -20.08700 -19.65687 -18.01291 -17.68421 -17.44588 -16.78252 -16.22567 -16.05784 -15.69629 -15.44034 -14.54158 -14.45682 -14.33922 -13.83152 -13.64765 -13.54372 -13.23984 -12.99131 -12.58854 -12.19295 -12.08718 -11.63002 -11.57921 -10.97395 -10.71208 -10.54219 -10.53514 -10.41508 -10.34026 -10.00949 -9.60618 -9.37376 -9.15747 -8.97802 -8.34485 -8.29090 -5.93948 -3.96586 0.59048 0.80658 2.34660 2.61764 3.36190 3.40572 3.42738 3.44538 3.64984 3.99294 4.29775 4.49729 4.57681 4.63215 4.66736 4.90268 5.07376 5.21925 5.24480 5.30658 5.37394 5.41293 5.46935 5.59675 5.78059 5.90545 6.11628 6.26300 6.40830 6.54381 6.82971 6.85036 7.02327 7.20771 7.66099 7.74991 7.91127 8.07223 8.10360 8.48870 9.10931 9.66924 11.17383 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042270 B = 0.002746 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.245432 B =10195.550698 C =10821.235891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.558 5.558 3 C 0.502 3.498 4 O -0.462 6.462 5 C -0.135 4.135 6 C -0.105 4.105 7 C -0.109 4.109 8 C 0.020 3.980 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.348 3.652 18 N -0.454 5.454 19 C 0.127 3.873 20 C -0.186 4.186 21 C -0.080 4.080 22 C 0.004 3.996 23 F -0.131 7.131 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.261 0.739 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 -27.435 0.011 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.286 5.286 3 C 0.291 3.709 4 O -0.329 6.329 5 C -0.175 4.175 6 C -0.143 4.143 7 C -0.147 4.147 8 C -0.017 4.017 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.116 3.884 18 N -0.168 5.168 19 C -0.031 4.031 20 C -0.207 4.207 21 C -0.107 4.107 22 C -0.022 4.022 23 F -0.110 7.110 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.227 -26.348 -0.008 26.861 hybrid contribution -1.272 -0.008 0.024 1.273 sum -6.500 -26.356 0.016 27.146 Atomic orbital electron populations 1.22346 0.76753 1.04858 1.03529 1.45981 1.08001 1.03650 1.70930 1.21513 0.88772 0.84720 0.75925 1.90803 1.13411 1.86111 1.42624 1.21888 1.00245 0.91172 1.04171 1.21501 0.97002 0.92592 1.03167 1.21644 0.99095 0.93856 1.00119 1.19087 0.94044 0.91213 0.97351 1.21243 0.92938 0.91206 1.50566 0.92804 1.25041 0.94841 0.99222 0.95453 1.69965 1.06052 1.26630 1.50815 0.86669 0.79573 0.83256 0.78541 1.20285 1.21320 1.20288 1.18750 0.89103 0.84971 0.95560 1.67862 1.03995 1.30884 1.14045 1.22859 1.00781 0.86555 0.92924 1.21996 0.93925 1.00090 1.04731 1.21458 0.94792 0.97021 0.97417 1.18090 0.77860 0.93919 1.12287 1.91489 1.27867 1.97075 1.94573 0.90574 0.88688 0.90693 0.88738 0.88747 0.91632 0.91620 0.93413 0.93411 0.96567 0.96565 0.92978 0.81578 0.83762 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 8.86 59.85 0.53 1.10 16 2 N -0.56 -7.13 3.09 -122.69 -0.38 -7.51 16 3 C 0.50 7.69 7.64 -10.99 -0.08 7.61 16 4 O -0.46 -8.90 14.23 5.56 0.08 -8.82 16 5 C -0.13 -1.83 4.01 -27.88 -0.11 -1.94 16 6 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 7 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 8 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 9 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 10 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 13 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.35 4.56 7.34 -154.55 -1.13 3.42 16 18 N -0.45 -6.46 7.88 -12.30 -0.10 -6.56 16 19 C 0.13 1.26 11.17 -17.56 -0.20 1.06 16 20 C -0.19 -1.33 10.10 -39.42 -0.40 -1.73 16 21 C -0.08 -0.62 10.16 -39.25 -0.40 -1.01 16 22 C 0.00 0.04 7.21 -39.10 -0.28 -0.25 16 23 F -0.13 -1.23 13.40 2.25 0.03 -1.20 16 24 H 0.08 0.58 7.16 -51.93 -0.37 0.21 16 25 H 0.09 0.66 5.77 -51.93 -0.30 0.36 16 26 H 0.07 0.57 7.31 -51.93 -0.38 0.19 16 27 H 0.09 1.08 7.78 -51.93 -0.40 0.68 16 28 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 29 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -35.66 323.22 -7.86 -43.53 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -5.20 Total: -4.74 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.88 Total: -9.58 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.26 Total: -41.01 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.03 Total: -1.20 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.66 -7.86 -43.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588949220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.836 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds