Wall clock time and date at job start Tue Mar 31 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00085 * 2 1 4 4 O 1.21275 * 119.99659 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99694 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.46723 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.47034 * 180.02562 * 6 5 3 8 8 C 1.52993 * 109.47159 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47218 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99959 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00254 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99678 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00156 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47188 * 60.00264 * 13 11 9 15 15 H 1.48503 * 109.47468 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47049 * 300.00428 * 13 11 9 17 17 C 1.39517 * 119.99801 * 179.97438 * 2 1 3 18 18 N 1.32328 * 119.70726 * 178.60242 * 17 2 1 19 19 C 1.31925 * 121.66104 * 179.97438 * 18 17 2 20 20 C 1.38092 * 120.89923 * 359.97438 * 19 18 17 21 21 C 1.38809 * 119.32230 * 0.30003 * 20 19 18 22 22 C 1.38556 * 118.47392 * 359.45523 * 21 20 19 23 23 F 1.35101 * 120.47293 * 180.26233 * 22 21 20 24 24 H 1.08998 * 109.47222 * 240.20315 * 1 2 3 25 25 H 1.08998 * 109.47085 * 0.20260 * 1 2 3 26 26 H 1.09004 * 109.47077 * 120.20542 * 1 2 3 27 27 H 1.08995 * 109.47824 * 299.99989 * 5 3 2 28 28 H 1.08997 * 109.47030 * 60.00792 * 5 3 2 29 29 H 1.09002 * 109.47535 * 300.00122 * 6 5 3 30 30 H 1.08999 * 109.47089 * 60.00430 * 6 5 3 31 31 H 1.08995 * 109.46817 * 300.00684 * 7 6 5 32 32 H 1.08999 * 109.46939 * 60.00207 * 7 6 5 33 33 H 1.09002 * 109.47300 * 300.00530 * 8 7 6 34 34 H 1.08999 * 109.47102 * 60.00214 * 8 7 6 35 35 H 0.97002 * 119.99691 * 180.02562 * 12 11 9 36 36 H 1.08002 * 119.55443 * 180.02562 * 19 18 17 37 37 H 1.07992 * 120.34002 * 180.02562 * 20 19 18 38 38 H 1.07998 * 120.76058 * 179.69881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3797 3.6352 0.0002 7 6 1.6146 4.9602 0.0002 8 6 2.6088 6.1231 0.0004 9 6 1.8554 7.4282 -0.0002 10 1 0.7754 7.4282 -0.0002 11 6 2.5448 8.6223 0.0003 12 7 3.8599 8.6222 0.0008 13 14 1.6108 10.2400 0.0003 14 1 0.7567 10.3184 1.2125 15 1 2.5758 11.3688 0.0003 16 1 0.7575 10.3189 -1.2125 17 6 2.1625 -1.2083 0.0005 18 7 3.4855 -1.2017 -0.0275 19 6 4.1836 -2.3211 -0.0276 20 6 3.5538 -3.5497 0.0023 21 6 2.1670 -3.6022 0.0265 22 6 1.4607 -2.4102 0.0313 23 9 0.1100 -2.4141 0.0599 24 1 -0.3633 -0.5107 0.8918 25 1 -0.3633 1.0276 -0.0036 26 1 -0.3633 -0.5170 -0.8882 27 1 0.7590 2.5299 -0.8907 28 1 0.7585 2.5302 0.8892 29 1 3.0057 3.5774 0.8906 30 1 3.0069 3.5774 -0.8893 31 1 0.9883 5.0181 -0.8899 32 1 0.9876 5.0177 0.8900 33 1 3.2356 6.0653 0.8903 34 1 3.2355 6.0654 -0.8896 35 1 4.3449 9.4623 0.0016 36 1 5.2625 -2.2761 -0.0506 37 1 4.1343 -4.4604 0.0024 38 1 1.6504 -4.5505 0.0452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588949220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:46 Heat of formation + Delta-G solvation = -59.546641 kcal Electronic energy + Delta-G solvation = -20978.574890 eV Core-core repulsion = 17542.176718 eV Total energy + Delta-G solvation = -3436.398172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.10151 -41.87164 -40.25082 -37.01618 -36.59051 -34.66148 -33.36345 -32.03531 -30.88556 -28.04988 -27.59560 -25.46778 -24.36071 -23.57668 -21.80793 -20.69614 -18.76344 -18.65426 -18.37485 -18.18425 -17.65653 -17.10245 -16.74492 -16.51688 -16.15342 -15.80314 -15.07731 -14.87348 -14.59402 -14.51369 -14.25548 -14.22819 -13.63172 -13.62667 -13.60089 -13.26632 -12.79499 -12.69377 -12.36899 -12.17037 -12.15090 -11.48478 -11.41362 -11.38585 -11.29439 -11.05998 -10.77104 -10.54165 -10.16122 -9.16034 -8.18298 -6.30653 -0.16447 0.12214 1.40473 1.44709 1.50865 1.52641 1.56763 2.42262 2.68486 2.91777 3.14373 3.17747 3.63686 3.70136 3.93104 3.98638 4.04739 4.09361 4.31327 4.46877 4.55788 4.60534 4.63982 4.73846 4.79493 4.85052 4.87966 4.99638 5.15626 5.19952 5.32454 5.35361 5.56076 5.67098 5.77867 5.88135 5.95813 6.25328 6.83379 6.87872 7.11114 7.38976 8.93910 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042270 B = 0.002746 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.245432 B =10195.550698 C =10821.235891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.560 5.560 3 C 0.499 3.501 4 O -0.519 6.519 5 C -0.123 4.123 6 C -0.096 4.096 7 C -0.094 4.094 8 C 0.019 3.981 9 C -0.542 4.542 10 H 0.067 0.933 11 C -0.007 4.007 12 N -0.939 5.939 13 Si 0.970 3.030 14 H -0.264 1.264 15 H -0.286 1.286 16 H -0.264 1.264 17 C 0.310 3.690 18 N -0.505 5.505 19 C 0.105 3.895 20 C -0.161 4.161 21 C -0.075 4.075 22 C 0.003 3.997 23 F -0.127 7.127 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.063 0.937 33 H -0.016 1.016 34 H -0.016 1.016 35 H 0.263 0.737 36 H 0.181 0.819 37 H 0.187 0.813 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 -29.182 0.027 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.287 5.287 3 C 0.289 3.711 4 O -0.390 6.390 5 C -0.162 4.162 6 C -0.134 4.134 7 C -0.131 4.131 8 C -0.018 4.018 9 C -0.580 4.580 10 H 0.086 0.914 11 C -0.205 4.205 12 N -0.579 5.579 13 Si 0.794 3.206 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.189 1.189 17 C 0.079 3.921 18 N -0.219 5.219 19 C -0.052 4.052 20 C -0.182 4.182 21 C -0.101 4.101 22 C -0.022 4.022 23 F -0.106 7.106 24 H 0.104 0.896 25 H 0.131 0.869 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.071 0.929 36 H 0.198 0.802 37 H 0.204 0.796 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.953 -28.147 0.008 29.249 hybrid contribution -0.371 0.382 0.020 0.533 sum -8.324 -27.765 0.028 28.986 Atomic orbital electron populations 1.22613 0.74414 1.06434 1.04462 1.45994 1.09369 1.03085 1.70235 1.21729 0.88244 0.85963 0.75170 1.90776 1.15623 1.87045 1.45606 1.21772 0.99065 0.88403 1.06978 1.21267 0.97422 0.93576 1.01116 1.21433 0.97801 0.92382 1.01532 1.19048 0.94693 0.93814 0.94284 1.21733 0.93790 0.92176 1.50319 0.91444 1.26107 0.95778 1.03790 0.94778 1.70132 1.08118 1.27825 1.51848 0.85429 0.78160 0.77641 0.79377 1.18855 1.21125 1.18864 1.19013 0.89311 0.85851 0.97924 1.67742 1.05266 1.33451 1.15478 1.23292 1.01633 0.86914 0.93380 1.22416 0.94079 1.00351 1.01339 1.21950 0.95033 0.97437 0.95681 1.18197 0.78111 0.93852 1.12026 1.91495 1.27477 1.97064 1.94532 0.89627 0.86858 0.89718 0.85785 0.85790 0.93830 0.93826 0.91835 0.91827 0.99773 0.99774 0.92855 0.80230 0.79617 0.79722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 8.86 127.77 1.13 2.06 16 2 N -0.56 -14.13 3.09 -660.46 -2.04 -16.17 16 3 C 0.50 15.58 7.64 87.66 0.67 16.25 16 4 O -0.52 -21.24 14.23 -3.01 -0.04 -21.28 16 5 C -0.12 -3.20 4.01 29.85 0.12 -3.08 16 6 C -0.10 -3.54 4.50 30.60 0.14 -3.41 16 7 C -0.09 -3.86 5.15 30.59 0.16 -3.70 16 8 C 0.02 1.04 4.97 29.84 0.15 1.19 16 9 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 10 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 11 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 12 N -0.94 -59.71 13.29 21.45 0.28 -59.42 16 13 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 C 0.31 8.10 7.34 132.93 0.98 9.07 16 18 N -0.50 -14.83 7.88 -192.82 -1.52 -16.35 16 19 C 0.11 2.04 11.17 84.64 0.95 2.98 16 20 C -0.16 -1.84 10.10 22.37 0.23 -1.61 16 21 C -0.07 -0.91 10.16 22.48 0.23 -0.68 16 22 C 0.00 0.06 7.21 22.58 0.16 0.22 16 23 F -0.13 -2.11 13.40 44.97 0.60 -1.51 16 24 H 0.09 1.13 7.16 -2.39 -0.02 1.11 16 25 H 0.11 1.24 5.77 -2.39 -0.01 1.22 16 26 H 0.08 1.11 7.31 -2.39 -0.02 1.10 16 27 H 0.12 2.52 7.78 -2.39 -0.02 2.50 16 28 H 0.12 2.52 7.79 -2.39 -0.02 2.50 16 29 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 37 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.19 0.87 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -82.67 323.22 5.97 -76.70 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.06 Total: 3.04 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.60 Total: -12.10 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -3.27 Total: -91.94 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.60 Total: -1.51 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -82.67 5.97 -76.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588949220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.156 kcal (2) G-P(sol) polarization free energy of solvation -82.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds