Wall clock time and date at job start Tue Mar 31 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46966 * 2 1 4 4 C 1.50700 * 109.47144 * 240.00624 * 2 1 3 5 5 H 1.07997 * 119.99662 * 241.36302 * 4 2 1 6 6 C 1.37872 * 120.00267 * 61.35357 * 4 2 1 7 7 N 1.31512 * 120.00425 * 193.96213 * 6 4 2 8 8 Si 1.86806 * 119.99969 * 13.96638 * 6 4 2 9 9 H 1.48498 * 109.46777 * 84.55374 * 8 6 4 10 10 H 1.48504 * 109.47220 * 204.55260 * 8 6 4 11 11 H 1.48499 * 109.46972 * 324.55590 * 8 6 4 12 12 C 1.52996 * 109.47320 * 119.99964 * 2 1 3 13 13 N 1.46897 * 109.47382 * 300.00347 * 12 2 1 14 14 C 1.46900 * 110.99993 * 180.02562 * 13 12 2 15 15 C 1.50699 * 109.47185 * 179.97438 * 14 13 12 16 16 N 1.28344 * 124.90107 * 89.69625 * 15 14 13 17 17 C 1.33482 * 117.83383 * 179.85985 * 16 15 14 18 18 C 1.33867 * 113.18515 * 0.39247 * 17 16 15 19 19 S 1.70739 * 124.90601 * 270.00036 * 15 14 13 20 20 C 1.51714 * 110.89433 * 179.82709 * 18 17 16 21 21 C 1.54303 * 104.80433 * 17.23147 * 20 18 17 22 22 C 1.52619 * 137.15262 * 180.02562 * 17 16 15 23 23 H 1.09000 * 109.47134 * 309.31185 * 1 2 3 24 24 H 1.09005 * 109.47129 * 69.31456 * 1 2 3 25 25 H 1.09004 * 109.46652 * 189.31239 * 1 2 3 26 26 H 1.08998 * 109.47217 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46914 * 300.00627 * 3 2 1 28 28 H 1.09002 * 109.46525 * 59.99926 * 3 2 1 29 29 H 0.97003 * 120.00743 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46988 * 180.02562 * 12 2 1 31 31 H 1.09006 * 109.47036 * 60.00472 * 12 2 1 32 32 H 1.00904 * 110.99878 * 303.95357 * 13 12 2 33 33 H 1.09002 * 109.46917 * 299.99791 * 14 13 12 34 34 H 1.09003 * 109.47234 * 60.00047 * 14 13 12 35 35 H 1.08998 * 110.37132 * 136.06439 * 20 18 17 36 36 H 1.09003 * 110.36991 * 258.28924 * 20 18 17 37 37 H 1.09001 * 110.97199 * 91.92490 * 21 20 18 38 38 H 1.09002 * 110.97129 * 215.64695 * 21 20 18 39 39 H 1.08998 * 110.32026 * 44.03844 * 22 17 16 40 40 H 1.09004 * 110.31468 * 281.84998 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6350 -1.6010 -1.1316 6 6 1.7225 -0.2231 -2.4825 7 7 1.9162 -0.9720 -3.5461 8 14 1.0277 1.5010 -2.6683 9 1 2.1418 2.4820 -2.7080 10 1 0.2471 1.5870 -3.9287 11 1 0.1418 1.8044 -1.5157 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0288 2.4487 14 6 2.0220 -0.6946 3.6702 15 6 1.5014 0.0426 4.8771 16 7 0.3857 -0.2023 5.4624 17 6 0.0639 0.5381 6.5254 18 6 0.9860 1.4618 6.8230 19 16 2.3071 1.3290 5.6588 20 6 0.5668 2.2743 8.0337 21 6 -0.5387 1.4353 8.7081 22 6 -1.0937 0.6305 7.5156 23 1 -0.3633 0.6511 0.7951 24 1 -0.3633 0.3630 -0.9615 25 1 -0.3633 -1.0142 0.1663 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6986 -0.6291 -4.4270 30 1 3.1301 -0.7208 1.2494 31 1 1.6768 -1.7490 1.2492 32 1 1.8198 0.9436 2.4402 33 1 1.6589 -1.7223 3.6872 34 1 3.1119 -0.6940 3.6868 35 1 1.4097 2.4069 8.7120 36 1 0.1745 3.2428 7.7234 37 1 -0.1187 0.7725 9.4646 38 1 -1.3078 2.0769 9.1382 39 1 -1.3957 -0.3656 7.8390 40 1 -1.9365 1.1545 7.0646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970543.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:08 Heat of formation + Delta-G solvation = 40.978045 kcal Electronic energy + Delta-G solvation = -19457.398800 eV Core-core repulsion = 16591.572882 eV Total energy + Delta-G solvation = -2865.825919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25961 -39.07732 -37.30035 -35.48435 -33.62365 -30.13886 -29.36283 -27.99339 -27.50872 -27.05734 -25.23557 -23.45669 -21.90750 -20.71892 -19.90371 -18.92474 -18.07753 -17.47667 -16.82330 -16.46673 -15.94938 -15.47990 -15.03830 -14.84627 -14.63737 -14.55313 -14.44047 -14.07556 -13.82293 -13.71994 -13.66443 -13.27785 -12.75191 -12.58763 -12.30848 -12.15009 -12.09872 -11.97957 -11.89832 -11.82741 -11.62012 -10.97858 -10.57395 -10.50424 -10.34700 -10.18631 -9.58558 -9.30875 -8.29214 -6.28342 -0.27489 0.24510 0.79079 1.34570 1.39151 1.49091 1.73147 2.35741 2.74237 3.07585 3.36543 3.59411 3.71323 4.08121 4.14742 4.15916 4.28849 4.40833 4.50530 4.53723 4.61225 4.68091 4.76300 4.78818 4.86281 4.88638 4.97535 5.01121 5.09774 5.11786 5.13031 5.27105 5.28754 5.30504 5.57692 5.72287 5.83987 6.02225 6.31526 6.44865 6.77670 6.80056 7.37097 8.87881 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.003553 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.544606 B = 7878.848065 C = 7949.665881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.036 3.964 3 C -0.148 4.148 4 C -0.512 4.512 5 H 0.033 0.967 6 C 0.018 3.982 7 N -0.947 5.947 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.316 1.316 11 H -0.217 1.217 12 C 0.099 3.901 13 N -0.683 5.683 14 C 0.136 3.864 15 C 0.050 3.950 16 N -0.485 5.485 17 C 0.012 3.988 18 C -0.254 4.254 19 S 0.153 5.847 20 C -0.038 4.038 21 C -0.104 4.104 22 C -0.043 4.043 23 H 0.051 0.949 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.056 0.944 32 H 0.342 0.658 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 9.163 27.260 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.035 3.965 3 C -0.205 4.205 4 C -0.551 4.551 5 H 0.052 0.948 6 C -0.179 4.179 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.207 1.207 10 H -0.246 1.246 11 H -0.142 1.142 12 C -0.030 4.030 13 N -0.316 5.316 14 C 0.004 3.996 15 C -0.230 4.230 16 N -0.200 5.200 17 C -0.118 4.118 18 C -0.376 4.376 19 S 0.410 5.590 20 C -0.078 4.078 21 C -0.143 4.143 22 C -0.083 4.083 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.114 8.885 26.670 28.191 hybrid contribution 0.154 0.178 -0.847 0.879 sum -1.960 9.063 25.824 27.438 Atomic orbital electron populations 1.21992 0.96999 0.99811 0.99118 1.18461 0.93157 0.92610 0.92261 1.22295 1.00807 0.97622 0.99765 1.21185 1.32312 1.10963 0.90613 0.94823 1.25779 0.95477 1.01181 0.95494 1.70103 1.51208 1.38108 0.99307 0.86382 0.79341 0.80771 0.76393 1.20725 1.24561 1.14155 1.21685 0.96158 0.97260 0.87913 1.60454 1.64238 1.06494 1.00440 1.20463 0.97471 0.97682 0.83983 1.26697 0.93882 1.00436 1.01962 1.65341 1.16436 1.29208 1.09013 1.22318 1.00311 0.94170 0.95023 1.27623 0.98321 1.05702 1.05912 1.83545 1.21176 1.31909 1.22357 1.20861 0.99365 0.97465 0.90089 1.22388 0.97859 0.98260 0.95748 1.21036 0.92990 1.02340 0.91896 0.92984 0.94961 0.94812 0.92967 0.95212 0.91597 0.92811 0.95396 0.92515 0.83800 0.88895 0.91280 0.88897 0.88538 0.89624 0.86840 0.90022 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 7.55 71.98 0.54 -4.81 16 2 C 0.04 1.62 0.57 -52.93 -0.03 1.59 16 3 C -0.15 -5.91 7.37 71.98 0.53 -5.38 16 4 C -0.51 -28.73 8.62 25.60 0.22 -28.51 16 5 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 6 C 0.02 1.04 5.32 84.65 0.45 1.49 16 7 N -0.95 -59.84 13.96 21.44 0.30 -59.54 16 8 Si 0.94 45.25 22.79 68.60 1.56 46.82 16 9 H -0.28 -13.01 7.10 99.48 0.71 -12.30 16 10 H -0.32 -15.58 7.11 99.48 0.71 -14.87 16 11 H -0.22 -9.41 4.65 99.48 0.46 -8.95 16 12 C 0.10 3.78 4.57 86.30 0.39 4.17 16 13 N -0.68 -22.09 5.89 -517.94 -3.05 -25.14 16 14 C 0.14 3.81 6.26 85.56 0.54 4.34 16 15 C 0.05 1.38 6.88 88.62 0.61 1.99 16 16 N -0.49 -14.93 10.54 -176.80 -1.86 -16.79 16 17 C 0.01 0.29 7.70 41.93 0.32 0.62 16 18 C -0.25 -5.30 7.42 25.02 0.19 -5.12 16 19 S 0.15 3.36 23.18 -56.49 -1.31 2.05 16 20 C -0.04 -0.46 6.80 30.61 0.21 -0.25 16 21 C -0.10 -0.95 7.12 31.44 0.22 -0.73 16 22 C -0.04 -0.70 6.81 30.87 0.21 -0.49 16 23 H 0.05 2.06 7.88 -2.39 -0.02 2.04 16 24 H 0.03 1.47 4.30 -2.38 -0.01 1.46 16 25 H 0.03 1.49 8.12 -2.39 -0.02 1.47 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.03 1.26 2.25 -2.39 -0.01 1.25 16 28 H 0.07 2.20 6.57 -2.39 -0.02 2.18 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.93 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.34 10.33 6.76 -89.69 -0.61 9.73 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.80 319.94 0.24 -69.57 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.19 Total: 14.12 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 4.41 Total: -31.09 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -4.61 Total: -101.46 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.56 Total: 46.82 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -69.80 0.24 -69.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970543.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.543 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds