Wall clock time and date at job start Tue Mar 31 2020 02:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46688 * 2 1 4 4 C 1.53000 * 109.46754 * 240.00099 * 2 1 3 5 5 F 1.39904 * 109.46728 * 179.97438 * 4 2 1 6 6 N 1.46496 * 109.46988 * 120.00553 * 2 1 3 7 7 C 1.34785 * 119.99719 * 274.99762 * 6 2 1 8 8 O 1.21588 * 119.99800 * 0.02562 * 7 6 2 9 9 N 1.34772 * 119.99983 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99886 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47235 * 180.02562 * 10 9 7 12 12 C 1.38636 * 119.74593 * 269.73302 * 11 10 9 13 13 C 1.37623 * 120.24521 * 179.71976 * 12 11 10 14 14 C 1.40712 * 119.74377 * 0.57054 * 13 12 11 15 15 C 1.41400 * 120.24363 * 179.68527 * 14 13 12 16 16 H 1.08001 * 120.00225 * 155.30418 * 15 14 13 17 17 C 1.39946 * 119.99839 * 335.30245 * 15 14 13 18 18 N 1.30831 * 120.00014 * 342.23943 * 17 15 14 19 19 Si 1.86794 * 120.00069 * 162.23213 * 17 15 14 20 20 H 1.48508 * 109.46924 * 94.66506 * 19 17 15 21 21 H 1.48501 * 109.47416 * 214.66563 * 19 17 15 22 22 H 1.48502 * 109.47160 * 334.66844 * 19 17 15 23 23 C 1.40718 * 119.51400 * 359.69745 * 14 13 12 24 24 C 1.37614 * 119.74148 * 0.02562 * 23 14 13 25 25 H 1.09007 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47135 * 299.99441 * 1 2 3 27 27 H 1.08998 * 109.47569 * 60.00067 * 1 2 3 28 28 H 1.08998 * 109.47751 * 299.99875 * 4 2 1 29 29 H 1.09000 * 109.47607 * 60.00278 * 4 2 1 30 30 H 0.96994 * 120.00872 * 94.99965 * 6 2 1 31 31 H 0.97001 * 119.99949 * 0.02562 * 9 7 6 32 32 H 1.08993 * 109.47139 * 60.00254 * 10 9 7 33 33 H 1.08999 * 109.46879 * 300.00080 * 10 9 7 34 34 H 1.07994 * 119.87633 * 359.96685 * 12 11 10 35 35 H 1.08001 * 120.12375 * 180.27241 * 13 12 11 36 36 H 0.96995 * 119.99922 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.12524 * 179.97438 * 23 14 13 38 38 H 1.08001 * 119.87435 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 9 3.4390 -0.7207 -1.2496 6 7 2.0183 -0.6907 1.1961 7 6 2.1471 -0.0184 2.3571 8 8 1.8575 1.1613 2.4119 9 7 2.5958 -0.6539 3.4577 10 6 2.7352 0.0768 4.7198 11 6 3.2517 -0.8552 5.7854 12 6 2.3569 -1.5676 6.5689 13 6 2.8175 -2.4259 7.5411 14 6 4.2021 -2.5698 7.7464 15 6 4.6867 -3.4436 8.7468 16 1 5.6780 -3.8641 8.6626 17 6 3.8820 -3.7637 9.8461 18 7 2.8497 -3.0159 10.1408 19 14 4.2815 -5.2586 10.8924 20 1 5.1043 -4.8424 12.0566 21 1 3.0203 -5.8775 11.3736 22 1 5.0377 -6.2444 10.0790 23 6 5.1009 -1.8375 6.9489 24 6 4.6179 -0.9893 5.9788 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6767 -1.7489 -1.2494 29 1 1.6767 -0.2074 -2.1393 30 1 2.2490 -1.6318 1.1526 31 1 2.8264 -1.5951 3.4141 32 1 1.7645 0.4707 5.0206 33 1 3.4364 0.9006 4.5871 34 1 1.2946 -1.4515 6.4131 35 1 2.1187 -2.9831 8.1474 36 1 2.2921 -3.2375 10.9030 37 1 6.1656 -1.9400 7.0983 38 1 5.3059 -0.4266 5.3652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592001505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:33 Heat of formation + Delta-G solvation = -79.506112 kcal Electronic energy + Delta-G solvation = -20800.289737 eV Core-core repulsion = 17363.026057 eV Total energy + Delta-G solvation = -3437.263680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.85416 -39.79722 -37.75678 -35.94717 -34.56428 -33.43041 -31.45963 -29.93801 -29.33471 -26.85245 -26.67798 -23.77558 -21.86329 -21.06766 -20.63891 -20.08145 -18.35606 -17.38741 -16.89665 -16.18764 -15.73976 -15.43348 -15.12759 -14.97260 -14.46988 -14.13653 -13.88247 -13.74801 -13.32767 -13.02056 -12.69300 -12.54887 -12.12581 -12.02733 -11.85327 -11.59294 -11.47682 -11.19228 -11.09426 -10.98332 -10.61593 -10.55177 -9.98718 -9.68883 -9.48504 -9.22403 -9.18219 -8.49053 -7.56606 -7.44923 -6.86691 -4.46157 2.49611 2.89750 2.98916 3.01876 3.06311 3.20193 3.45342 3.85380 4.12772 4.38650 4.55721 4.58605 4.70056 4.85845 5.13000 5.38593 5.45174 5.60334 5.69047 5.83464 5.96423 6.00455 6.26098 6.32232 6.37190 6.49097 6.87167 6.90455 6.98104 7.13214 7.20131 7.27282 7.51812 7.74989 7.95797 8.02502 8.19699 8.29472 8.54060 8.79013 8.85079 8.87102 10.07487 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032714 B = 0.002920 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.709611 B = 9587.467768 C = 9720.758199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 H 0.098 0.902 4 C 0.055 3.945 5 F -0.213 7.213 6 N -0.747 5.747 7 C 0.701 3.299 8 O -0.600 6.600 9 N -0.733 5.733 10 C 0.203 3.797 11 C -0.244 4.244 12 C -0.080 4.080 13 C -0.170 4.170 14 C 0.117 3.883 15 C -0.459 4.459 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.787 5.787 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.230 4.230 24 C -0.069 4.069 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.395 0.605 31 H 0.396 0.604 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.118 0.882 36 H 0.282 0.718 37 H 0.093 0.907 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 0.019 -15.768 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.116 0.884 4 C -0.001 4.001 5 F -0.194 7.194 6 N -0.403 5.403 7 C 0.401 3.599 8 O -0.479 6.479 9 N -0.387 5.387 10 C 0.081 3.919 11 C -0.246 4.246 12 C -0.099 4.099 13 C -0.189 4.189 14 C 0.114 3.886 15 C -0.488 4.488 16 H 0.097 0.903 17 C -0.143 4.143 18 N -0.412 5.412 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.249 4.249 24 C -0.088 4.088 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.229 0.771 31 H 0.230 0.770 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.630 1.172 -15.502 16.221 hybrid contribution 0.374 -1.522 0.594 1.676 sum -4.256 -0.350 -14.908 15.508 Atomic orbital electron populations 1.22139 0.94349 1.02462 1.03241 1.21342 0.94783 0.98290 0.83279 0.88443 1.22366 0.76217 1.02582 0.98919 1.92807 1.30771 1.98035 1.97760 1.45112 1.72674 1.13594 1.08933 1.16065 0.78382 0.85102 0.80327 1.90881 1.57784 1.14495 1.84774 1.45719 1.69724 1.14072 1.09194 1.19799 0.99650 0.92615 0.79881 1.19001 0.93536 1.08455 1.03647 1.20561 0.96710 0.96736 0.95910 1.21304 0.96102 1.02133 0.99394 1.17670 0.91652 0.89008 0.90254 1.19653 1.01472 1.23905 1.03762 0.90295 1.25955 0.93951 0.96641 0.97766 1.69827 1.13646 1.33559 1.24162 0.86298 0.79017 0.81613 0.79834 1.19482 1.19964 1.18353 1.20971 0.97867 1.03249 1.02837 1.20418 0.93769 0.97574 0.97003 0.92236 0.91030 0.91509 0.90288 0.89327 0.77095 0.77039 0.92556 0.92629 0.89405 0.86450 0.90699 0.88906 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.13 1.28 2.94 -67.93 -0.20 1.08 16 3 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 4 C 0.05 0.39 7.05 37.16 0.26 0.66 16 5 F -0.21 -2.32 17.28 2.25 0.04 -2.28 16 6 N -0.75 -8.83 5.01 -58.68 -0.29 -9.13 16 7 C 0.70 11.31 8.53 -86.91 -0.74 10.57 16 8 O -0.60 -11.88 16.01 5.29 0.08 -11.79 16 9 N -0.73 -11.77 5.55 -66.42 -0.37 -12.14 16 10 C 0.20 3.75 5.79 -5.19 -0.03 3.72 16 11 C -0.24 -5.08 5.27 -104.33 -0.55 -5.63 16 12 C -0.08 -1.78 9.67 -39.66 -0.38 -2.17 16 13 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 14 C 0.12 3.00 5.57 -106.82 -0.60 2.41 16 15 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 16 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 17 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 18 N -0.79 -19.77 10.97 55.55 0.61 -19.16 16 19 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.23 -5.43 9.80 -38.87 -0.38 -5.81 16 24 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 25 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.40 3.76 8.62 -40.82 -0.35 3.41 16 31 H 0.40 5.73 8.48 -40.82 -0.35 5.39 16 32 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.12 3.03 6.18 -52.49 -0.32 2.71 16 36 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 37 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -29.61 330.47 -8.58 -38.19 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.19 Total: 11.35 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -3.42 Total: -13.02 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.05 Total: -40.42 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.61 -8.58 -38.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592001505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.315 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds