Wall clock time and date at job start Tue Mar 31 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46688 * 2 1 4 4 C 1.53000 * 109.46754 * 240.00099 * 2 1 3 5 5 F 1.39904 * 109.46728 * 179.97438 * 4 2 1 6 6 N 1.46496 * 109.46988 * 120.00553 * 2 1 3 7 7 C 1.34785 * 119.99719 * 274.99762 * 6 2 1 8 8 O 1.21588 * 119.99800 * 0.02562 * 7 6 2 9 9 N 1.34772 * 119.99983 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99886 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47235 * 180.02562 * 10 9 7 12 12 C 1.38636 * 119.74593 * 269.73302 * 11 10 9 13 13 C 1.37623 * 120.24521 * 179.71976 * 12 11 10 14 14 C 1.40712 * 119.74377 * 0.57054 * 13 12 11 15 15 C 1.41400 * 120.24363 * 179.68527 * 14 13 12 16 16 H 1.08001 * 120.00225 * 155.30418 * 15 14 13 17 17 C 1.39946 * 119.99839 * 335.30245 * 15 14 13 18 18 N 1.30831 * 120.00014 * 342.23943 * 17 15 14 19 19 Si 1.86794 * 120.00069 * 162.23213 * 17 15 14 20 20 H 1.48508 * 109.46924 * 94.66506 * 19 17 15 21 21 H 1.48501 * 109.47416 * 214.66563 * 19 17 15 22 22 H 1.48502 * 109.47160 * 334.66844 * 19 17 15 23 23 C 1.40718 * 119.51400 * 359.69745 * 14 13 12 24 24 C 1.37614 * 119.74148 * 0.02562 * 23 14 13 25 25 H 1.09007 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47135 * 299.99441 * 1 2 3 27 27 H 1.08998 * 109.47569 * 60.00067 * 1 2 3 28 28 H 1.08998 * 109.47751 * 299.99875 * 4 2 1 29 29 H 1.09000 * 109.47607 * 60.00278 * 4 2 1 30 30 H 0.96994 * 120.00872 * 94.99965 * 6 2 1 31 31 H 0.97001 * 119.99949 * 0.02562 * 9 7 6 32 32 H 1.08993 * 109.47139 * 60.00254 * 10 9 7 33 33 H 1.08999 * 109.46879 * 300.00080 * 10 9 7 34 34 H 1.07994 * 119.87633 * 359.96685 * 12 11 10 35 35 H 1.08001 * 120.12375 * 180.27241 * 13 12 11 36 36 H 0.96995 * 119.99922 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.12524 * 179.97438 * 23 14 13 38 38 H 1.08001 * 119.87435 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 9 3.4390 -0.7207 -1.2496 6 7 2.0183 -0.6907 1.1961 7 6 2.1471 -0.0184 2.3571 8 8 1.8575 1.1613 2.4119 9 7 2.5958 -0.6539 3.4577 10 6 2.7352 0.0768 4.7198 11 6 3.2517 -0.8552 5.7854 12 6 2.3569 -1.5676 6.5689 13 6 2.8175 -2.4259 7.5411 14 6 4.2021 -2.5698 7.7464 15 6 4.6867 -3.4436 8.7468 16 1 5.6780 -3.8641 8.6626 17 6 3.8820 -3.7637 9.8461 18 7 2.8497 -3.0159 10.1408 19 14 4.2815 -5.2586 10.8924 20 1 5.1043 -4.8424 12.0566 21 1 3.0203 -5.8775 11.3736 22 1 5.0377 -6.2444 10.0790 23 6 5.1009 -1.8375 6.9489 24 6 4.6179 -0.9893 5.9788 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6767 -1.7489 -1.2494 29 1 1.6767 -0.2074 -2.1393 30 1 2.2490 -1.6318 1.1526 31 1 2.8264 -1.5951 3.4141 32 1 1.7645 0.4707 5.0206 33 1 3.4364 0.9006 4.5871 34 1 1.2946 -1.4515 6.4131 35 1 2.1187 -2.9831 8.1474 36 1 2.2921 -3.2375 10.9030 37 1 6.1656 -1.9400 7.0983 38 1 5.3059 -0.4266 5.3652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592001505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:32 Heat of formation + Delta-G solvation = -97.914779 kcal Electronic energy + Delta-G solvation = -20801.087997 eV Core-core repulsion = 17363.026057 eV Total energy + Delta-G solvation = -3438.061940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.56870 -41.06529 -39.50568 -37.02085 -36.12831 -35.07152 -32.69447 -31.45959 -31.12469 -28.39752 -27.42075 -25.42273 -22.94156 -22.81766 -21.80473 -21.74843 -19.58978 -19.23876 -17.84973 -17.22394 -16.89782 -16.62388 -16.41352 -16.07174 -15.91817 -15.57270 -15.40310 -15.12458 -14.78652 -14.23787 -13.95442 -13.83209 -13.64545 -13.37226 -13.24320 -12.92035 -12.75753 -12.70100 -12.39638 -12.16174 -12.11828 -11.68949 -11.50516 -11.35216 -11.28044 -11.01817 -10.36607 -9.75096 -9.39912 -9.29214 -8.67125 -6.37107 0.82101 1.13387 1.38863 1.44610 1.53884 1.86812 2.17616 2.20088 2.70227 3.37438 3.46722 3.75401 3.96380 4.00957 4.17406 4.29823 4.32846 4.46398 4.52433 4.66824 4.71032 4.79676 4.85147 4.98334 5.04244 5.14697 5.30833 5.34941 5.42693 5.51822 5.56856 5.68435 5.88143 6.05952 6.08329 6.20559 6.35880 6.67544 6.91536 6.99998 7.12050 7.60155 8.29705 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032714 B = 0.002920 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.709611 B = 9587.467768 C = 9720.758199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.071 0.929 4 C 0.056 3.944 5 F -0.234 7.234 6 N -0.732 5.732 7 C 0.699 3.301 8 O -0.639 6.639 9 N -0.729 5.729 10 C 0.214 3.786 11 C -0.227 4.227 12 C -0.080 4.080 13 C -0.191 4.191 14 C 0.087 3.913 15 C -0.497 4.497 16 H 0.077 0.923 17 C 0.036 3.964 18 N -0.821 5.821 19 Si 0.982 3.018 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.258 1.258 23 C -0.243 4.243 24 C -0.067 4.067 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.409 0.591 31 H 0.405 0.595 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.289 0.711 37 H 0.098 0.902 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 -0.745 -17.504 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.017 3.983 3 H 0.089 0.911 4 C 0.001 3.999 5 F -0.216 7.216 6 N -0.389 5.389 7 C 0.399 3.601 8 O -0.521 6.521 9 N -0.383 5.383 10 C 0.090 3.910 11 C -0.229 4.229 12 C -0.099 4.099 13 C -0.211 4.211 14 C 0.084 3.916 15 C -0.526 4.526 16 H 0.095 0.905 17 C -0.180 4.180 18 N -0.447 5.447 19 Si 0.802 3.198 20 H -0.188 1.188 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.263 4.263 24 C -0.086 4.086 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.245 0.755 31 H 0.241 0.759 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.982 0.379 -17.286 17.994 hybrid contribution 0.441 -1.168 0.976 1.584 sum -4.541 -0.788 -16.310 16.949 Atomic orbital electron populations 1.22069 0.92978 1.03470 1.02933 1.21555 0.95863 0.97281 0.83567 0.91054 1.22584 0.74709 1.04286 0.98285 1.92766 1.32846 1.98176 1.97785 1.45059 1.71485 1.14186 1.08174 1.16175 0.78091 0.84687 0.81135 1.90858 1.59429 1.16347 1.85495 1.45403 1.69988 1.14359 1.08587 1.19540 0.99253 0.92021 0.80177 1.19191 0.93181 1.07246 1.03248 1.20745 0.97910 0.96048 0.95220 1.21256 0.95788 1.03484 1.00527 1.18004 0.92405 0.89968 0.91194 1.19898 1.02133 1.25515 1.05012 0.90480 1.26782 0.93532 0.99100 0.98582 1.69875 1.14663 1.35053 1.25064 0.85198 0.79019 0.77625 0.77924 1.18831 1.19030 1.18131 1.21153 0.98066 1.03690 1.03354 1.20674 0.94528 0.96918 0.96488 0.90518 0.94274 0.88891 0.87501 0.86255 0.75486 0.75931 0.92948 0.92725 0.87748 0.88115 0.90004 0.88382 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 71.98 0.68 -1.61 16 2 C 0.12 2.19 2.94 44.99 0.13 2.33 16 3 H 0.07 1.67 7.58 -2.39 -0.02 1.66 16 4 C 0.06 0.63 7.05 71.98 0.51 1.14 16 5 F -0.23 -4.60 17.28 44.97 0.78 -3.82 16 6 N -0.73 -16.03 5.01 -457.81 -2.29 -18.32 16 7 C 0.70 21.79 8.53 179.05 1.53 23.32 16 8 O -0.64 -25.12 16.01 -3.99 -0.06 -25.19 16 9 N -0.73 -22.32 5.55 -482.30 -2.68 -25.00 16 10 C 0.21 7.62 5.79 85.63 0.50 8.11 16 11 C -0.23 -9.21 5.27 -19.67 -0.10 -9.31 16 12 C -0.08 -3.56 9.67 22.22 0.21 -3.35 16 13 C -0.19 -9.74 8.70 22.73 0.20 -9.54 16 14 C 0.09 4.57 5.57 -21.29 -0.12 4.45 16 15 C -0.50 -26.18 9.05 23.46 0.21 -25.97 16 16 H 0.08 3.92 7.91 -2.91 -0.02 3.89 16 17 C 0.04 1.76 5.14 85.26 0.44 2.19 16 18 N -0.82 -42.18 10.97 21.83 0.24 -41.94 16 19 Si 0.98 37.20 29.59 68.60 2.03 39.23 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 21 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 23 C -0.24 -11.57 9.80 22.73 0.22 -11.35 16 24 C -0.07 -2.83 9.67 22.22 0.21 -2.62 16 25 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.41 6.77 8.62 -92.71 -0.80 5.97 16 31 H 0.41 10.98 8.48 -92.71 -0.79 10.19 16 32 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 33 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 34 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.10 5.40 6.18 -2.91 -0.02 5.38 16 36 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 37 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -65.91 330.47 2.14 -63.77 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -0.50 Total: 33.47 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 4.62 Total: -22.20 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -4.73 Total: -85.26 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.78 Total: -3.82 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -65.91 2.14 -63.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592001505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.141 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds