Wall clock time and date at job start Tue Mar 31 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42898 * 109.47379 * 2 1 4 4 C 1.35722 * 117.00492 * 179.97438 * 3 2 1 5 5 C 1.38637 * 119.62867 * 179.97438 * 4 3 2 6 6 C 1.39143 * 119.04666 * 179.97438 * 5 4 3 7 7 N 1.39342 * 120.83740 * 179.97438 * 6 5 4 8 8 C 1.46502 * 119.99920 * 354.70224 * 7 6 5 9 9 C 1.52994 * 109.47027 * 184.83801 * 8 7 6 10 10 C 1.50699 * 115.55028 * 80.98968 * 9 8 7 11 11 H 1.08008 * 120.00150 * 219.76660 * 10 9 8 12 12 C 1.37878 * 120.00356 * 39.77362 * 10 9 8 13 13 N 1.31519 * 119.99816 * 16.75020 * 12 10 9 14 14 Si 1.86795 * 120.00169 * 196.75625 * 12 10 9 15 15 H 1.48497 * 109.47229 * 59.99772 * 14 12 10 16 16 H 1.48507 * 109.46926 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47365 * 299.99552 * 14 12 10 18 18 C 1.52997 * 117.50035 * 295.32132 * 9 8 7 19 19 C 1.52994 * 60.03462 * 252.49861 * 18 9 8 20 20 C 1.39784 * 118.32524 * 0.25952 * 6 5 4 21 21 F 1.35103 * 120.42182 * 179.72456 * 20 6 5 22 22 C 1.37893 * 119.15983 * 359.51567 * 20 6 5 23 23 N 1.32143 * 120.87549 * 0.49688 * 22 20 6 24 24 H 1.09004 * 109.47524 * 300.00398 * 1 2 3 25 25 H 1.08998 * 109.47108 * 60.00354 * 1 2 3 26 26 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47576 * 239.99196 * 2 1 3 28 28 H 1.09007 * 109.46873 * 119.99525 * 2 1 3 29 29 H 1.08002 * 120.47780 * 0.02846 * 5 4 3 30 30 H 0.97001 * 119.99540 * 174.69419 * 7 6 5 31 31 H 1.08994 * 109.47509 * 64.83231 * 8 7 6 32 32 H 1.08999 * 109.46748 * 304.83489 * 8 7 6 33 33 H 0.96994 * 119.99876 * 184.98921 * 13 12 10 34 34 H 1.09006 * 117.49608 * 0.02562 * 18 9 8 35 35 H 1.09004 * 117.50305 * 144.99543 * 18 9 8 36 36 H 1.08998 * 117.49751 * 107.49611 * 19 18 9 37 37 H 1.08997 * 117.50012 * 252.52260 * 19 18 9 38 38 H 1.07998 * 119.56526 * 180.20521 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8733 2.8097 0.0000 6 6 5.2546 2.9780 0.0011 7 7 5.8188 4.2521 0.0001 8 6 4.9605 5.4332 -0.1192 9 6 5.8303 6.6881 -0.2155 10 6 6.3980 6.9824 -1.5801 11 1 7.4094 7.3487 -1.6768 12 6 5.6261 6.7843 -2.7053 13 7 4.3213 6.6620 -2.5945 14 14 6.4336 6.6894 -4.3870 15 1 7.3979 5.5603 -4.4101 16 1 5.3931 6.4723 -5.4242 17 1 7.1517 7.9594 -4.6638 18 6 6.6884 7.0478 0.9991 19 6 5.4499 7.8815 0.6646 20 6 6.0618 1.8368 -0.0028 21 9 7.4080 1.9511 -0.0076 22 6 5.4668 0.5929 0.0025 23 7 4.1510 0.4706 0.0014 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.2170 3.6674 -0.0003 30 1 6.7800 4.3568 0.0786 31 1 4.3160 5.5042 0.7569 32 1 4.3466 5.3471 -1.0158 33 1 3.7860 6.4507 -3.3752 34 1 6.6335 6.3901 1.8666 35 1 7.6635 7.4973 0.8112 36 1 4.5799 7.7724 1.3121 37 1 5.6102 8.8792 0.2561 38 1 6.0842 -0.2932 0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596216630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:01 Heat of formation + Delta-G solvation = -26.557021 kcal Electronic energy + Delta-G solvation = -21769.000101 eV Core-core repulsion = 18334.032466 eV Total energy + Delta-G solvation = -3434.967635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.37359 -40.20292 -38.04014 -37.10738 -34.75369 -32.32857 -31.91225 -30.03343 -29.25007 -26.19423 -25.40141 -23.49374 -22.86867 -21.66407 -21.15298 -19.35819 -18.28745 -17.59997 -17.04488 -16.20839 -16.14790 -15.26854 -14.89230 -14.84876 -14.70642 -14.19652 -13.88452 -13.67833 -13.50176 -13.19640 -12.96103 -12.68267 -12.44011 -11.93657 -11.83690 -11.74015 -11.50317 -11.08757 -10.97691 -10.62779 -10.59021 -10.43127 -10.15131 -9.59583 -9.40055 -9.24751 -8.89303 -8.23740 -8.15508 -7.23775 -6.24621 -4.24889 1.39411 1.77199 3.15660 3.21984 3.29069 3.32386 3.88501 4.03635 4.28363 4.48550 4.62845 4.84472 5.01649 5.06775 5.24762 5.29847 5.38488 5.42901 5.67164 5.82151 5.83678 5.87237 5.95747 6.01296 6.16148 6.33214 6.34421 6.49588 6.52490 6.54764 6.79545 6.90198 7.19240 7.39185 7.50459 7.74040 7.76272 8.13336 8.16623 8.23182 8.71366 9.35832 10.79696 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015291 B = 0.005114 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.643829 B = 5473.708960 C = 5744.794074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.068 3.932 3 O -0.305 6.305 4 C 0.350 3.650 5 C -0.255 4.255 6 C 0.270 3.730 7 N -0.694 5.694 8 C 0.140 3.860 9 C 0.039 3.961 10 C -0.493 4.493 11 H 0.062 0.938 12 C 0.074 3.926 13 N -0.871 5.871 14 Si 0.887 3.113 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.209 4.209 19 C -0.188 4.188 20 C -0.078 4.078 21 F -0.140 7.140 22 C 0.146 3.854 23 N -0.573 5.573 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.147 0.853 30 H 0.406 0.594 31 H 0.034 0.966 32 H 0.119 0.881 33 H 0.265 0.735 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 -11.026 5.353 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.213 6.213 4 C 0.173 3.827 5 C -0.282 4.282 6 C 0.150 3.850 7 N -0.316 5.316 8 C 0.018 3.982 9 C 0.038 3.962 10 C -0.530 4.530 11 H 0.081 0.919 12 C -0.129 4.129 13 N -0.507 5.507 14 Si 0.714 3.286 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.247 4.247 19 C -0.227 4.227 20 C -0.106 4.106 21 F -0.119 7.119 22 C -0.009 4.009 23 N -0.301 5.301 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.165 0.835 30 H 0.241 0.759 31 H 0.052 0.948 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.138 -11.370 5.198 13.169 hybrid contribution 1.446 0.703 -0.843 1.815 sum -2.692 -10.668 4.355 11.833 Atomic orbital electron populations 1.21818 0.93413 1.02519 1.03333 1.22527 0.94379 0.81538 1.02332 1.86235 1.17105 1.30084 1.87870 1.19327 0.83536 0.89243 0.90602 1.20247 0.92853 0.96573 1.18550 1.17864 0.91528 0.85807 0.89775 1.45054 1.10451 1.02018 1.74059 1.21487 0.92515 0.82214 1.01993 1.19080 0.95822 0.90979 0.90343 1.20476 0.98886 1.44993 0.88609 0.91950 1.24906 0.94391 0.94478 0.99153 1.69898 1.04012 1.45850 1.30933 0.86726 0.79429 0.78900 0.83535 1.20027 1.21076 1.20053 1.22885 0.95429 1.05498 1.00841 1.22952 0.96553 0.97943 1.05222 1.18025 0.77758 0.94130 1.20658 1.91423 1.28394 1.96715 1.95395 1.21980 0.89831 0.95012 0.94126 1.67341 1.04806 1.32378 1.25539 0.91743 0.91644 0.90612 0.91775 0.91828 0.83501 0.75870 0.94824 0.86352 0.92460 0.91257 0.90362 0.91459 0.89993 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.15 0.38 -1.05 16 2 C 0.07 0.82 6.03 37.15 0.22 1.05 16 3 O -0.31 -4.84 10.11 -18.87 -0.19 -5.03 16 4 C 0.35 6.02 7.48 -17.19 -0.13 5.89 16 5 C -0.25 -4.67 9.30 -39.10 -0.36 -5.03 16 6 C 0.27 5.05 6.69 -83.53 -0.56 4.49 16 7 N -0.69 -13.75 5.68 -58.43 -0.33 -14.08 16 8 C 0.14 3.04 4.65 -4.04 -0.02 3.02 16 9 C 0.04 0.88 1.71 -155.63 -0.27 0.62 16 10 C -0.49 -12.65 8.98 -34.44 -0.31 -12.95 16 11 H 0.06 1.61 7.87 -52.48 -0.41 1.20 16 12 C 0.07 1.92 5.12 -17.82 -0.09 1.83 16 13 N -0.87 -23.08 11.10 55.43 0.62 -22.46 16 14 Si 0.89 20.43 29.57 -169.99 -5.03 15.40 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C -0.21 -4.21 9.80 -26.74 -0.26 -4.47 16 19 C -0.19 -4.02 9.89 -26.69 -0.26 -4.29 16 20 C -0.08 -1.33 7.35 -39.13 -0.29 -1.62 16 21 F -0.14 -2.40 16.77 2.25 0.04 -2.37 16 22 C 0.15 2.22 11.15 -17.54 -0.20 2.03 16 23 N -0.57 -9.28 9.21 -13.37 -0.12 -9.40 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 28 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.15 2.74 6.92 -52.49 -0.36 2.38 16 30 H 0.41 7.93 7.99 -40.82 -0.33 7.61 16 31 H 0.03 0.70 7.82 -51.93 -0.41 0.29 16 32 H 0.12 2.90 5.29 -51.93 -0.27 2.62 16 33 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.07 1.34 8.08 -51.93 -0.42 0.93 16 37 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -26.67 327.59 -7.36 -34.03 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.14 Total: 9.46 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.14 Total: -10.48 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.16 Total: -45.95 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.19 Total: -5.03 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.67 -7.36 -34.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596216630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.470 kcal (2) G-P(sol) polarization free energy of solvation -26.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds