Wall clock time and date at job start Tue Mar 31 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42898 * 109.47379 * 2 1 4 4 C 1.35722 * 117.00492 * 179.97438 * 3 2 1 5 5 C 1.38637 * 119.62867 * 179.97438 * 4 3 2 6 6 C 1.39143 * 119.04666 * 179.97438 * 5 4 3 7 7 N 1.39342 * 120.83740 * 179.97438 * 6 5 4 8 8 C 1.46502 * 119.99920 * 354.70224 * 7 6 5 9 9 C 1.52994 * 109.47027 * 184.83801 * 8 7 6 10 10 C 1.50699 * 115.55028 * 80.98968 * 9 8 7 11 11 H 1.08008 * 120.00150 * 219.76660 * 10 9 8 12 12 C 1.37878 * 120.00356 * 39.77362 * 10 9 8 13 13 N 1.31519 * 119.99816 * 16.75020 * 12 10 9 14 14 Si 1.86795 * 120.00169 * 196.75625 * 12 10 9 15 15 H 1.48497 * 109.47229 * 59.99772 * 14 12 10 16 16 H 1.48507 * 109.46926 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47365 * 299.99552 * 14 12 10 18 18 C 1.52997 * 117.50035 * 295.32132 * 9 8 7 19 19 C 1.52994 * 60.03462 * 252.49861 * 18 9 8 20 20 C 1.39784 * 118.32524 * 0.25952 * 6 5 4 21 21 F 1.35103 * 120.42182 * 179.72456 * 20 6 5 22 22 C 1.37893 * 119.15983 * 359.51567 * 20 6 5 23 23 N 1.32143 * 120.87549 * 0.49688 * 22 20 6 24 24 H 1.09004 * 109.47524 * 300.00398 * 1 2 3 25 25 H 1.08998 * 109.47108 * 60.00354 * 1 2 3 26 26 H 1.09001 * 109.47142 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47576 * 239.99196 * 2 1 3 28 28 H 1.09007 * 109.46873 * 119.99525 * 2 1 3 29 29 H 1.08002 * 120.47780 * 0.02846 * 5 4 3 30 30 H 0.97001 * 119.99540 * 174.69419 * 7 6 5 31 31 H 1.08994 * 109.47509 * 64.83231 * 8 7 6 32 32 H 1.08999 * 109.46748 * 304.83489 * 8 7 6 33 33 H 0.96994 * 119.99876 * 184.98921 * 13 12 10 34 34 H 1.09006 * 117.49608 * 0.02562 * 18 9 8 35 35 H 1.09004 * 117.50305 * 144.99543 * 18 9 8 36 36 H 1.08998 * 117.49751 * 107.49611 * 19 18 9 37 37 H 1.08997 * 117.50012 * 252.52260 * 19 18 9 38 38 H 1.07998 * 119.56526 * 180.20521 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3518 1.5251 0.0005 5 6 3.8733 2.8097 0.0000 6 6 5.2546 2.9780 0.0011 7 7 5.8188 4.2521 0.0001 8 6 4.9605 5.4332 -0.1192 9 6 5.8303 6.6881 -0.2155 10 6 6.3980 6.9824 -1.5801 11 1 7.4094 7.3487 -1.6768 12 6 5.6261 6.7843 -2.7053 13 7 4.3213 6.6620 -2.5945 14 14 6.4336 6.6894 -4.3870 15 1 7.3979 5.5603 -4.4101 16 1 5.3931 6.4723 -5.4242 17 1 7.1517 7.9594 -4.6638 18 6 6.6884 7.0478 0.9991 19 6 5.4499 7.8815 0.6646 20 6 6.0618 1.8368 -0.0028 21 9 7.4080 1.9511 -0.0076 22 6 5.4668 0.5929 0.0025 23 7 4.1510 0.4706 0.0014 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.2170 3.6674 -0.0003 30 1 6.7800 4.3568 0.0786 31 1 4.3160 5.5042 0.7569 32 1 4.3466 5.3471 -1.0158 33 1 3.7860 6.4507 -3.3752 34 1 6.6335 6.3901 1.8666 35 1 7.6635 7.4973 0.8112 36 1 4.5799 7.7724 1.3121 37 1 5.6102 8.8792 0.2561 38 1 6.0842 -0.2932 0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596216630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:00 Heat of formation + Delta-G solvation = -42.190599 kcal Electronic energy + Delta-G solvation = -21769.678024 eV Core-core repulsion = 18334.032466 eV Total energy + Delta-G solvation = -3435.645558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.71058 -41.50639 -39.44753 -38.61418 -36.24680 -34.26780 -32.89634 -31.46010 -30.49080 -27.94005 -27.14908 -24.58508 -24.23117 -23.10609 -22.60429 -21.11694 -19.63169 -19.03381 -18.39405 -17.91877 -17.32168 -16.75799 -16.53193 -16.22083 -16.15196 -15.71677 -15.40715 -15.19625 -14.72740 -14.51021 -14.31362 -14.07093 -13.59391 -13.51585 -13.15361 -13.08570 -12.86367 -12.83413 -12.43756 -12.39430 -12.12349 -11.78534 -11.59927 -11.35954 -11.08597 -10.72097 -10.65922 -10.08380 -9.47548 -8.74013 -8.18562 -6.23906 0.07716 0.38752 1.37425 1.42082 1.47249 1.95486 2.38092 2.42203 2.69567 2.95647 3.18938 3.37285 3.60693 3.92843 4.06531 4.15166 4.18827 4.23552 4.45678 4.49171 4.53831 4.59682 4.64629 4.73849 4.86871 4.90624 4.97975 5.00137 5.00366 5.18951 5.24467 5.41220 5.51343 5.53752 5.85699 6.15559 6.30730 6.31311 6.63666 6.78312 6.83206 7.37678 8.82864 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015291 B = 0.005114 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.643829 B = 5473.708960 C = 5744.794074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.318 6.318 4 C 0.350 3.650 5 C -0.270 4.270 6 C 0.256 3.744 7 N -0.700 5.700 8 C 0.156 3.844 9 C 0.010 3.990 10 C -0.507 4.507 11 H 0.054 0.946 12 C 0.036 3.964 13 N -0.891 5.891 14 Si 0.936 3.064 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.183 4.183 19 C -0.190 4.190 20 C -0.087 4.087 21 F -0.141 7.141 22 C 0.161 3.839 23 N -0.568 5.568 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.405 0.595 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -12.711 5.838 14.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.225 6.225 4 C 0.172 3.828 5 C -0.297 4.297 6 C 0.138 3.862 7 N -0.323 5.323 8 C 0.033 3.967 9 C 0.009 3.991 10 C -0.544 4.544 11 H 0.072 0.928 12 C -0.165 4.165 13 N -0.529 5.529 14 Si 0.762 3.238 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.220 4.220 19 C -0.228 4.228 20 C -0.115 4.115 21 F -0.120 7.120 22 C 0.005 3.995 23 N -0.295 5.295 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.241 0.759 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.968 -13.070 5.688 14.796 hybrid contribution 1.351 1.144 -0.961 2.014 sum -2.617 -11.926 4.727 13.093 Atomic orbital electron populations 1.21847 0.91187 1.04313 1.03165 1.22850 0.96140 0.79839 1.02624 1.86241 1.16360 1.32495 1.87445 1.19404 0.84332 0.89044 0.89992 1.20247 0.92817 0.96959 1.19697 1.18074 0.91962 0.85860 0.90289 1.44854 1.10086 1.02001 1.75366 1.21088 0.92261 0.82608 1.00740 1.19138 0.97696 0.92040 0.90209 1.20717 0.98523 1.44872 0.90278 0.92824 1.25459 0.94770 0.94628 1.01647 1.69999 1.04744 1.46810 1.31320 0.85952 0.78521 0.78736 0.80562 1.20231 1.21070 1.19621 1.22868 0.94903 1.04403 0.99868 1.22942 0.97907 0.97003 1.04976 1.18157 0.77705 0.94282 1.21316 1.91420 1.28343 1.96743 1.95477 1.22596 0.89696 0.95589 0.91620 1.67483 1.05150 1.31688 1.25220 0.91671 0.92047 0.87796 0.91701 0.91220 0.84725 0.75907 0.94391 0.89254 0.92743 0.89299 0.90027 0.90176 0.90955 0.78176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.06 1.36 6.03 71.98 0.43 1.80 16 3 O -0.32 -9.84 10.11 -90.44 -0.91 -10.75 16 4 C 0.35 11.75 7.48 84.72 0.63 12.39 16 5 C -0.27 -9.96 9.30 22.58 0.21 -9.75 16 6 C 0.26 9.54 6.69 38.54 0.26 9.79 16 7 N -0.70 -27.82 5.68 -338.77 -1.92 -29.74 16 8 C 0.16 6.87 4.65 86.38 0.40 7.27 16 9 C 0.01 0.46 1.71 -52.91 -0.09 0.37 16 10 C -0.51 -26.22 8.98 25.60 0.23 -25.99 16 11 H 0.05 2.79 7.87 -2.91 -0.02 2.77 16 12 C 0.04 1.90 5.12 84.65 0.43 2.33 16 13 N -0.89 -48.15 11.10 21.45 0.24 -47.91 16 14 Si 0.94 42.21 29.57 68.60 2.03 44.24 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C -0.18 -7.15 9.80 30.59 0.30 -6.85 16 19 C -0.19 -8.02 9.89 30.62 0.30 -7.72 16 20 C -0.09 -2.86 7.35 22.56 0.17 -2.69 16 21 F -0.14 -4.62 16.77 44.97 0.75 -3.86 16 22 C 0.16 4.48 11.15 84.56 0.94 5.43 16 23 N -0.57 -17.25 9.21 -309.04 -2.85 -20.10 16 24 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.45 8.10 -2.39 -0.02 1.44 16 28 H 0.07 1.49 8.10 -2.38 -0.02 1.47 16 29 H 0.13 5.22 6.92 -2.91 -0.02 5.20 16 30 H 0.41 15.81 7.99 -92.71 -0.74 15.07 16 31 H 0.04 1.59 7.82 -2.39 -0.02 1.57 16 32 H 0.09 4.51 5.29 -2.39 -0.01 4.49 16 33 H 0.26 13.77 8.32 -92.71 -0.77 12.99 16 34 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 35 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.08 3.14 8.08 -2.39 -0.02 3.12 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -56.53 327.59 2.64 -53.89 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.34 Total: 29.57 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 4.96 Total: -15.35 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -4.53 Total: -97.74 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.91 Total: -10.75 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.75 Total: -3.86 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -56.53 2.64 -53.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596216630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.702 kcal (2) G-P(sol) polarization free energy of solvation -56.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds