Wall clock time and date at job start Tue Mar 31 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47017 * 2 1 4 4 N 1.46498 * 109.46765 * 119.99784 * 2 1 3 5 5 C 1.34946 * 126.03784 * 274.97144 * 4 2 1 6 6 C 1.35324 * 107.74405 * 179.75103 * 5 4 2 7 7 C 1.39868 * 107.92010 * 0.40059 * 6 5 4 8 8 C 1.50698 * 125.89602 * 179.86390 * 7 6 5 9 9 S 1.81410 * 109.47069 * 269.71315 * 8 7 6 10 10 C 1.81391 * 103.00008 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.46931 * 175.09961 * 10 9 8 12 12 C 1.50697 * 115.54569 * 65.25161 * 11 10 9 13 13 H 1.07997 * 120.00508 * 268.61358 * 12 11 10 14 14 C 1.37886 * 119.99885 * 88.61496 * 12 11 10 15 15 N 1.31515 * 119.99764 * 174.71576 * 14 12 11 16 16 Si 1.86796 * 119.99861 * 354.71988 * 14 12 11 17 17 H 1.48503 * 109.46960 * 92.47995 * 16 14 12 18 18 H 1.48508 * 109.46764 * 212.47563 * 16 14 12 19 19 H 1.48500 * 109.47463 * 332.47513 * 16 14 12 20 20 C 1.52996 * 117.50056 * 279.57884 * 11 10 9 21 21 C 1.53000 * 117.49895 * 210.91806 * 11 10 9 22 22 N 1.30830 * 108.20329 * 359.59762 * 7 6 5 23 23 H 1.09001 * 109.46478 * 60.00873 * 1 2 3 24 24 H 1.09004 * 109.46663 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47164 * 300.00325 * 1 2 3 26 26 H 1.09000 * 109.47003 * 239.99942 * 2 1 3 27 27 H 1.09001 * 109.46899 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47093 * 299.99848 * 3 2 1 29 29 H 1.09000 * 109.47281 * 60.00113 * 3 2 1 30 30 H 1.07998 * 126.13050 * 0.02562 * 5 4 2 31 31 H 1.08005 * 126.03736 * 180.27475 * 6 5 4 32 32 H 1.09001 * 109.47353 * 149.71777 * 8 7 6 33 33 H 1.08998 * 109.47601 * 29.71348 * 8 7 6 34 34 H 1.08990 * 109.47277 * 295.10034 * 10 9 8 35 35 H 1.09003 * 109.47176 * 55.10827 * 10 9 8 36 36 H 0.97000 * 119.99664 * 180.02562 * 15 14 12 37 37 H 1.09005 * 117.49980 * 0.02562 * 20 11 10 38 38 H 1.09000 * 117.49716 * 145.01702 * 20 11 10 39 39 H 1.08999 * 117.49817 * 214.98260 * 21 11 10 40 40 H 1.09000 * 117.49973 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1937 -0.1391 2.4153 6 6 2.6514 -1.1064 3.2436 7 6 2.7680 -2.2873 2.5031 8 6 3.2454 -3.6164 3.0290 9 16 5.0437 -3.7377 2.8228 10 6 5.4225 -5.3769 3.5009 11 6 6.9058 -5.6863 3.2884 12 6 7.8682 -4.8003 4.0365 13 1 8.2499 -3.9035 3.5712 14 6 8.2615 -5.1345 5.3151 15 7 9.1792 -4.4198 5.9287 16 14 7.4909 -6.6025 6.1755 17 1 8.3178 -7.8111 5.9287 18 1 7.4214 -6.3400 7.6356 19 1 6.1210 -6.8234 5.6466 20 6 7.3326 -6.1844 1.9061 21 6 7.3008 -7.1514 3.0923 22 7 2.3857 -2.0401 1.2766 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.9992 0.8889 2.6831 31 1 2.8870 -0.9871 4.2908 32 1 2.7613 -4.4212 2.4757 33 1 2.9945 -3.7002 4.0863 34 1 5.1979 -5.3897 4.5673 35 1 4.8183 -6.1286 2.9931 36 1 9.4562 -4.6551 6.8281 37 1 6.5567 -6.2913 1.1480 38 1 8.3097 -5.8715 1.5380 39 1 8.2570 -7.4743 3.5041 40 1 6.5041 -7.8949 3.1152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596337891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:34 Heat of formation + Delta-G solvation = 96.587768 kcal Electronic energy + Delta-G solvation = -19001.461612 eV Core-core repulsion = 16138.047112 eV Total energy + Delta-G solvation = -2863.414500 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.18511 -36.90329 -36.09599 -32.02064 -31.71841 -29.90977 -28.14548 -27.70718 -27.27787 -25.28193 -22.76337 -21.57356 -20.25352 -19.84228 -18.91961 -17.19661 -16.39469 -15.53113 -15.28994 -14.90034 -14.57103 -14.38779 -13.82045 -13.69137 -13.65325 -13.16833 -12.98556 -12.96430 -12.65465 -12.51207 -12.46346 -12.03669 -11.83003 -11.64464 -11.42327 -11.03332 -10.70946 -10.50823 -10.42342 -10.10458 -9.62788 -9.54920 -8.99879 -8.94337 -8.53687 -8.43514 -8.30380 -6.80857 -6.04253 -4.05847 1.73836 2.23533 2.44633 3.20478 3.31688 3.40770 3.41345 3.48714 4.21114 4.46679 4.53428 4.70000 4.74204 4.77378 5.03321 5.08216 5.10537 5.22611 5.28265 5.31740 5.43350 5.59633 5.69500 5.70645 5.75250 5.83408 5.93165 5.99592 6.12207 6.14541 6.20178 6.44246 6.52562 6.71420 6.78070 7.07711 7.09517 7.17902 7.78090 7.81945 8.56965 9.01984 9.58796 11.07899 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.003625 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.391775 B = 7722.943223 C = 7939.861521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.164 4.164 4 N -0.369 5.369 5 C 0.050 3.950 6 C -0.254 4.254 7 C 0.099 3.901 8 C -0.030 4.030 9 S -0.199 6.199 10 C -0.048 4.048 11 C 0.015 3.985 12 C -0.478 4.478 13 H 0.081 0.919 14 C 0.079 3.921 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.279 1.279 18 H -0.294 1.294 19 H -0.260 1.260 20 C -0.173 4.173 21 C -0.195 4.195 22 N -0.284 5.284 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.170 0.830 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.264 0.736 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.764 8.164 -8.886 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.053 3.947 3 C -0.223 4.223 4 N -0.152 5.152 5 C -0.096 4.096 6 C -0.284 4.284 7 C -0.068 4.068 8 C -0.179 4.179 9 S 0.028 5.972 10 C -0.197 4.197 11 C 0.013 3.987 12 C -0.515 4.515 13 H 0.099 0.901 14 C -0.123 4.123 15 N -0.534 5.534 16 Si 0.705 3.295 17 H -0.205 1.205 18 H -0.220 1.220 19 H -0.184 1.184 20 C -0.210 4.210 21 C -0.234 4.234 22 N -0.107 5.107 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.187 0.813 31 H 0.167 0.833 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.229 8.558 -10.427 21.881 hybrid contribution -1.049 -1.326 2.005 2.623 sum -18.278 7.232 -8.421 21.385 Atomic orbital electron populations 1.22236 0.93852 1.03238 1.02851 1.21214 0.94561 0.92732 0.86158 1.22194 1.02648 0.93985 1.03435 1.48769 1.50928 1.07198 1.08352 1.22361 1.01888 0.99692 0.85612 1.21404 1.13021 0.92233 1.01754 1.21407 0.98599 0.95456 0.91309 1.21622 0.98925 0.94168 1.03206 1.87373 1.01135 1.26441 1.82206 1.23346 1.00517 0.93520 1.02268 1.19000 0.90184 0.92823 0.96742 1.20216 1.23743 1.08659 0.98911 0.90128 1.24949 0.94113 0.96284 0.96991 1.69902 1.29656 1.40078 1.13751 0.86894 0.81020 0.83320 0.78282 1.20511 1.22045 1.18442 1.22826 1.01914 1.04905 0.91383 1.23041 1.02038 0.93553 1.04782 1.77322 1.20997 0.93038 1.19345 0.90623 0.91660 0.91976 0.88045 0.91242 0.90088 0.91570 0.81312 0.83348 0.89664 0.88799 0.90457 0.92661 0.92652 0.90693 0.89405 0.89188 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.52 37.16 0.35 -0.79 16 2 C 0.16 1.37 3.93 -67.93 -0.27 1.10 16 3 C -0.16 -1.06 8.83 37.15 0.33 -0.73 16 4 N -0.37 -4.71 3.53 -54.86 -0.19 -4.90 16 5 C 0.05 0.59 10.59 -17.22 -0.18 0.41 16 6 C -0.25 -3.62 10.74 -40.01 -0.43 -4.05 16 7 C 0.10 1.61 6.48 -82.41 -0.53 1.08 16 8 C -0.03 -0.49 6.50 36.00 0.23 -0.25 16 9 S -0.20 -4.09 21.41 -107.50 -2.30 -6.39 16 10 C -0.05 -1.01 5.42 37.16 0.20 -0.81 16 11 C 0.01 0.34 0.79 -155.66 -0.12 0.22 16 12 C -0.48 -13.43 9.07 -34.44 -0.31 -13.74 16 13 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 14 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 15 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 16 Si 0.88 21.55 24.95 -169.99 -4.24 17.31 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.26 -5.98 5.69 56.52 0.32 -5.66 16 20 C -0.17 -3.65 9.96 -26.70 -0.27 -3.91 16 21 C -0.19 -4.17 7.67 -26.69 -0.20 -4.38 16 22 N -0.28 -4.63 12.58 33.67 0.42 -4.21 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.37 7.16 -51.93 -0.37 0.00 16 30 H 0.17 1.36 7.26 -52.49 -0.38 0.98 16 31 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16 32 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.68 6.54 -51.93 -0.34 1.34 16 35 H 0.05 1.04 8.09 -51.92 -0.42 0.62 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 39 H 0.09 2.02 7.33 -51.93 -0.38 1.64 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -32.65 341.66 -8.29 -40.94 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.60 Total: 2.42 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -1.30 Total: -23.70 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 1.00 Total: -35.73 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.24 Total: 17.31 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -2.30 Total: -6.39 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.65 -8.29 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596337891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.528 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds