Wall clock time and date at job start Tue Mar 31 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47017 * 2 1 4 4 N 1.46498 * 109.46765 * 119.99784 * 2 1 3 5 5 C 1.34946 * 126.03784 * 274.97144 * 4 2 1 6 6 C 1.35324 * 107.74405 * 179.75103 * 5 4 2 7 7 C 1.39868 * 107.92010 * 0.40059 * 6 5 4 8 8 C 1.50698 * 125.89602 * 179.86390 * 7 6 5 9 9 S 1.81410 * 109.47069 * 269.71315 * 8 7 6 10 10 C 1.81391 * 103.00008 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.46931 * 175.09961 * 10 9 8 12 12 C 1.50697 * 115.54569 * 65.25161 * 11 10 9 13 13 H 1.07997 * 120.00508 * 268.61358 * 12 11 10 14 14 C 1.37886 * 119.99885 * 88.61496 * 12 11 10 15 15 N 1.31515 * 119.99764 * 174.71576 * 14 12 11 16 16 Si 1.86796 * 119.99861 * 354.71988 * 14 12 11 17 17 H 1.48503 * 109.46960 * 92.47995 * 16 14 12 18 18 H 1.48508 * 109.46764 * 212.47563 * 16 14 12 19 19 H 1.48500 * 109.47463 * 332.47513 * 16 14 12 20 20 C 1.52996 * 117.50056 * 279.57884 * 11 10 9 21 21 C 1.53000 * 117.49895 * 210.91806 * 11 10 9 22 22 N 1.30830 * 108.20329 * 359.59762 * 7 6 5 23 23 H 1.09001 * 109.46478 * 60.00873 * 1 2 3 24 24 H 1.09004 * 109.46663 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47164 * 300.00325 * 1 2 3 26 26 H 1.09000 * 109.47003 * 239.99942 * 2 1 3 27 27 H 1.09001 * 109.46899 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47093 * 299.99848 * 3 2 1 29 29 H 1.09000 * 109.47281 * 60.00113 * 3 2 1 30 30 H 1.07998 * 126.13050 * 0.02562 * 5 4 2 31 31 H 1.08005 * 126.03736 * 180.27475 * 6 5 4 32 32 H 1.09001 * 109.47353 * 149.71777 * 8 7 6 33 33 H 1.08998 * 109.47601 * 29.71348 * 8 7 6 34 34 H 1.08990 * 109.47277 * 295.10034 * 10 9 8 35 35 H 1.09003 * 109.47176 * 55.10827 * 10 9 8 36 36 H 0.97000 * 119.99664 * 180.02562 * 15 14 12 37 37 H 1.09005 * 117.49980 * 0.02562 * 20 11 10 38 38 H 1.09000 * 117.49716 * 145.01702 * 20 11 10 39 39 H 1.08999 * 117.49817 * 214.98260 * 21 11 10 40 40 H 1.09000 * 117.49973 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1937 -0.1391 2.4153 6 6 2.6514 -1.1064 3.2436 7 6 2.7680 -2.2873 2.5031 8 6 3.2454 -3.6164 3.0290 9 16 5.0437 -3.7377 2.8228 10 6 5.4225 -5.3769 3.5009 11 6 6.9058 -5.6863 3.2884 12 6 7.8682 -4.8003 4.0365 13 1 8.2499 -3.9035 3.5712 14 6 8.2615 -5.1345 5.3151 15 7 9.1792 -4.4198 5.9287 16 14 7.4909 -6.6025 6.1755 17 1 8.3178 -7.8111 5.9287 18 1 7.4214 -6.3400 7.6356 19 1 6.1210 -6.8234 5.6466 20 6 7.3326 -6.1844 1.9061 21 6 7.3008 -7.1514 3.0923 22 7 2.3857 -2.0401 1.2766 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.9992 0.8889 2.6831 31 1 2.8870 -0.9871 4.2908 32 1 2.7613 -4.4212 2.4757 33 1 2.9945 -3.7002 4.0863 34 1 5.1979 -5.3897 4.5673 35 1 4.8183 -6.1286 2.9931 36 1 9.4562 -4.6551 6.8281 37 1 6.5567 -6.2913 1.1480 38 1 8.3097 -5.8715 1.5380 39 1 8.2570 -7.4743 3.5041 40 1 6.5041 -7.8949 3.1152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596337891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:33 Heat of formation + Delta-G solvation = 77.255762 kcal Electronic energy + Delta-G solvation = -19002.299911 eV Core-core repulsion = 16138.047112 eV Total energy + Delta-G solvation = -2864.252799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.20314 -38.69656 -36.86705 -34.19872 -32.75593 -30.94323 -29.74541 -28.56062 -28.16627 -27.36881 -23.61859 -23.28093 -21.40099 -20.93187 -20.60635 -18.43144 -18.00254 -16.99362 -16.80166 -16.32120 -15.50940 -15.49568 -15.38445 -15.01141 -14.80317 -14.70937 -14.43366 -14.36994 -13.73356 -13.51051 -13.32162 -13.10752 -13.00552 -12.90960 -12.60293 -12.34019 -12.12079 -12.06828 -11.91399 -11.65275 -11.56584 -11.07186 -10.83687 -10.65364 -10.11949 -10.10199 -9.48292 -8.42334 -8.24150 -6.30927 0.43675 1.13125 1.38569 1.40495 1.52563 1.55532 1.82698 2.14510 2.41016 3.09253 3.28315 3.42651 3.75348 3.87274 3.94269 4.02766 4.10123 4.12783 4.29466 4.41705 4.44326 4.47218 4.55137 4.64636 4.74571 4.78410 4.80721 4.82929 4.86446 4.92493 5.08102 5.08938 5.17618 5.22555 5.34435 5.48278 5.62565 5.72811 6.19485 6.35156 6.73859 6.75966 7.37319 8.92058 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.003625 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.391775 B = 7722.943223 C = 7939.861521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 C -0.158 4.158 4 N -0.365 5.365 5 C 0.065 3.935 6 C -0.281 4.281 7 C 0.075 3.925 8 C -0.008 4.008 9 S -0.262 6.262 10 C -0.035 4.035 11 C -0.013 4.013 12 C -0.476 4.476 13 H 0.024 0.976 14 C 0.020 3.980 15 N -0.951 5.951 16 Si 0.940 3.060 17 H -0.268 1.268 18 H -0.298 1.298 19 H -0.229 1.229 20 C -0.163 4.163 21 C -0.181 4.181 22 N -0.320 5.320 23 H 0.102 0.898 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.211 0.789 31 H 0.154 0.846 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.265 0.735 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.724 7.709 -9.539 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 C -0.216 4.216 4 N -0.148 5.148 5 C -0.082 4.082 6 C -0.311 4.311 7 C -0.090 4.090 8 C -0.157 4.157 9 S -0.035 6.035 10 C -0.184 4.184 11 C -0.015 4.015 12 C -0.514 4.514 13 H 0.043 0.957 14 C -0.177 4.177 15 N -0.591 5.591 16 Si 0.764 3.236 17 H -0.194 1.194 18 H -0.225 1.225 19 H -0.152 1.152 20 C -0.200 4.200 21 C -0.220 4.220 22 N -0.144 5.144 23 H 0.121 0.879 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.228 0.772 31 H 0.172 0.828 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.201 8.087 -11.120 24.437 hybrid contribution -0.139 -0.982 2.060 2.286 sum -20.340 7.105 -9.060 23.373 Atomic orbital electron populations 1.22188 0.92104 1.02497 1.04550 1.21631 0.95920 0.93679 0.84493 1.22194 1.01569 0.92371 1.05476 1.49172 1.49704 1.06224 1.09727 1.22945 0.99613 1.00915 0.84686 1.21651 1.14490 0.92401 1.02560 1.21489 0.99681 0.95963 0.91882 1.21548 0.94792 0.95088 1.04301 1.87582 1.06146 1.27386 1.82362 1.23141 0.98940 0.94128 1.02148 1.18897 0.90684 0.93719 0.98175 1.20282 1.24328 1.07542 0.99259 0.95727 1.25840 0.94491 0.99623 0.97736 1.70066 1.31933 1.42731 1.14335 0.85878 0.81685 0.79452 0.76605 1.19369 1.22471 1.15180 1.22832 1.01953 1.03966 0.91256 1.23101 1.02454 0.92784 1.03647 1.77216 1.22161 0.95413 1.19623 0.87900 0.93586 0.91268 0.88921 0.92871 0.87500 0.90112 0.77241 0.82811 0.88607 0.87422 0.91185 0.89478 0.92649 0.87985 0.90848 0.90488 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.52 71.98 0.69 -1.11 16 2 C 0.14 2.26 3.93 44.99 0.18 2.44 16 3 C -0.16 -1.59 8.83 71.98 0.64 -0.95 16 4 N -0.36 -8.83 3.53 -327.49 -1.15 -9.98 16 5 C 0.06 1.42 10.59 83.54 0.88 2.30 16 6 C -0.28 -7.79 10.74 21.99 0.24 -7.55 16 7 C 0.08 2.42 6.48 43.10 0.28 2.69 16 8 C -0.01 -0.25 6.50 71.24 0.46 0.21 16 9 S -0.26 -10.81 21.41 -56.49 -1.21 -12.02 16 10 C -0.04 -1.43 5.42 71.98 0.39 -1.04 16 11 C -0.01 -0.59 0.79 -52.93 -0.04 -0.64 16 12 C -0.48 -27.67 9.07 25.60 0.23 -27.44 16 13 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 14 C 0.02 1.18 5.47 84.66 0.46 1.64 16 15 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 16 Si 0.94 44.05 24.95 68.60 1.71 45.76 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 19 H -0.23 -9.52 5.69 99.48 0.57 -8.96 16 20 C -0.16 -6.63 9.96 30.62 0.30 -6.33 16 21 C -0.18 -7.23 7.67 30.62 0.23 -7.00 16 22 N -0.32 -10.30 12.58 -47.39 -0.60 -10.90 16 23 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.59 7.16 -2.39 -0.02 0.57 16 30 H 0.21 2.63 7.26 -2.91 -0.02 2.61 16 31 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.07 2.90 6.54 -2.40 -0.02 2.88 16 35 H 0.09 2.95 8.09 -2.39 -0.02 2.93 16 36 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 37 H 0.10 3.61 8.14 -2.38 -0.02 3.59 16 38 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.08 3.29 7.33 -2.39 -0.02 3.27 16 40 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -74.86 341.66 4.85 -70.01 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.86 Total: 20.10 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 4.94 Total: -42.77 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.45 Total: -81.08 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.71 Total: 45.76 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.21 Total: -12.02 kcal Total: -74.86 4.85 -70.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596337891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.267 kcal (2) G-P(sol) polarization free energy of solvation -74.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds