Wall clock time and date at job start Tue Mar 31 2020 01:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46681 * 2 1 4 4 C 1.52998 * 109.47353 * 240.00384 * 2 1 3 5 5 C 1.50693 * 109.47016 * 120.00069 * 2 1 3 6 6 C 1.34388 * 126.52192 * 239.96169 * 5 2 1 7 7 N 1.34362 * 108.34857 * 180.02562 * 6 5 2 8 8 C 1.31267 * 109.30432 * 0.02562 * 7 6 5 9 9 S 1.76201 * 125.80380 * 180.02562 * 8 7 6 10 10 C 1.81000 * 99.99946 * 359.97438 * 9 8 7 11 11 C 1.52998 * 109.47389 * 180.02562 * 10 9 8 12 12 C 1.50700 * 115.54901 * 39.92334 * 11 10 9 13 13 H 1.07998 * 119.99882 * 264.91315 * 12 11 10 14 14 C 1.37881 * 119.99963 * 84.90832 * 12 11 10 15 15 N 1.31513 * 119.99935 * 353.82249 * 14 12 11 16 16 Si 1.86797 * 119.99947 * 173.82507 * 14 12 11 17 17 H 1.48499 * 109.47256 * 60.00138 * 16 14 12 18 18 H 1.48499 * 109.47037 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47205 * 299.99817 * 16 14 12 20 20 C 1.52999 * 117.49796 * 254.21947 * 11 10 9 21 21 C 1.52994 * 117.50119 * 185.59432 * 11 10 9 22 22 N 1.36114 * 108.39607 * 0.02562 * 8 7 6 23 23 H 0.96995 * 126.50451 * 179.74498 * 22 8 7 24 24 H 1.08994 * 109.47393 * 299.99779 * 1 2 3 25 25 H 1.09001 * 109.47089 * 60.00110 * 1 2 3 26 26 H 1.09008 * 109.46657 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46539 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47269 * 299.99780 * 3 2 1 29 29 H 1.09002 * 109.46810 * 59.99741 * 3 2 1 30 30 H 1.08998 * 109.47040 * 299.99680 * 4 2 1 31 31 H 1.09001 * 109.47426 * 59.99712 * 4 2 1 32 32 H 1.08999 * 109.47336 * 179.97438 * 4 2 1 33 33 H 1.08003 * 125.82539 * 359.97438 * 6 5 2 34 34 H 1.09009 * 109.47074 * 300.00381 * 10 9 8 35 35 H 1.08995 * 109.47510 * 59.99802 * 10 9 8 36 36 H 0.97003 * 119.99911 * 174.95573 * 15 14 12 37 37 H 1.08997 * 117.49649 * 359.97438 * 20 11 10 38 38 H 1.08995 * 117.49531 * 145.01944 * 20 11 10 39 39 H 1.08999 * 117.50286 * 214.98000 * 21 11 10 40 40 H 1.09002 * 117.50075 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 2.8086 -0.1877 2.1948 7 7 3.0368 -1.1388 3.1161 8 6 2.4268 -2.2447 2.7583 9 16 2.4370 -3.7630 3.6523 10 6 3.4683 -3.2904 5.0626 11 6 3.6231 -4.4860 6.0047 12 6 3.8083 -5.8226 5.3336 13 1 2.9558 -6.4628 5.1608 14 6 5.0660 -6.2280 4.9400 15 7 6.0842 -5.4014 5.0387 16 14 5.3237 -7.9513 4.2668 17 1 4.4902 -8.1379 3.0520 18 1 6.7553 -8.1378 3.9189 19 1 4.9307 -8.9482 5.2948 20 6 2.8382 -4.4570 7.3177 21 6 4.3545 -4.2527 7.3281 22 7 1.7850 -2.0191 1.5794 23 1 1.2562 -2.6597 1.0785 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6768 -1.7488 -1.2493 31 1 1.6768 -0.2073 -2.1393 32 1 3.1301 -0.7207 -1.2495 33 1 3.1855 0.8241 2.2240 34 1 4.4505 -2.9794 4.7065 35 1 2.9975 -2.4651 5.5967 36 1 6.9804 -5.7091 4.8313 37 1 2.2120 -3.5860 7.5105 38 1 2.4556 -5.4048 7.6963 39 1 4.9693 -5.0659 7.7136 40 1 4.7258 -3.2474 7.5275 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601096768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:14 Heat of formation + Delta-G solvation = 42.171068 kcal Electronic energy + Delta-G solvation = -19479.293187 eV Core-core repulsion = 16613.519001 eV Total energy + Delta-G solvation = -2865.774185 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.85822 -38.43561 -37.65859 -33.99603 -33.42221 -30.13393 -29.26362 -28.17312 -28.07435 -27.34984 -23.57276 -22.92127 -22.35381 -21.20797 -20.72853 -18.92867 -17.93995 -16.75653 -16.55014 -16.21816 -15.68613 -15.55502 -15.25830 -14.96581 -14.86716 -14.55743 -14.47896 -13.92758 -13.37418 -13.17384 -12.99339 -12.96207 -12.77497 -12.59742 -12.40024 -12.32983 -12.01217 -11.93864 -11.83403 -11.68367 -11.38567 -11.02025 -10.94330 -10.72775 -10.46104 -10.10588 -9.87639 -8.15602 -8.07265 -6.21201 0.51321 0.96952 1.44803 1.45302 1.52150 1.57764 2.07332 2.37200 2.45491 3.20997 3.46436 3.65083 3.84777 4.03644 4.15588 4.24764 4.36988 4.40633 4.48610 4.68075 4.70579 4.71360 4.71626 4.86016 4.95608 4.99908 5.00412 5.02345 5.09596 5.15839 5.23802 5.23869 5.38483 5.47880 5.50586 5.63204 5.72755 5.77832 6.29719 6.35450 6.83397 6.98452 7.47710 8.98726 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.004372 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.257858 B = 6402.333933 C = 6948.921036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.011 3.989 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.008 3.992 6 C -0.046 4.046 7 N -0.526 5.526 8 C 0.170 3.830 9 S -0.002 6.002 10 C -0.020 4.020 11 C 0.020 3.980 12 C -0.501 4.501 13 H 0.057 0.943 14 C 0.037 3.963 15 N -0.901 5.901 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.288 1.288 19 H -0.270 1.270 20 C -0.181 4.181 21 C -0.152 4.152 22 N -0.546 5.546 23 H 0.428 0.572 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.182 0.818 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.260 0.740 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.594 10.723 -11.540 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 C -0.194 4.194 4 C -0.198 4.198 5 C -0.111 4.111 6 C -0.195 4.195 7 N -0.250 5.250 8 C -0.202 4.202 9 S 0.231 5.769 10 C -0.169 4.169 11 C 0.018 3.982 12 C -0.540 4.540 13 H 0.075 0.925 14 C -0.165 4.165 15 N -0.537 5.537 16 Si 0.767 3.233 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.195 1.195 20 C -0.218 4.218 21 C -0.192 4.192 22 N -0.153 5.153 23 H 0.268 0.732 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.199 0.801 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.443 9.854 -11.162 18.187 hybrid contribution 0.717 -0.173 -0.573 0.934 sum -9.726 9.681 -11.735 18.056 Atomic orbital electron populations 1.21902 0.92576 1.02058 1.03082 1.19193 0.96185 0.95254 0.88383 1.21856 1.01413 0.92800 1.03360 1.21918 1.01001 1.00072 0.96839 1.21773 1.04402 0.84254 1.00655 1.22463 1.03880 1.00072 0.93083 1.70769 1.24074 0.99811 1.30361 1.25809 1.01003 1.01510 0.91832 1.85602 1.64046 1.02867 1.24412 1.22813 0.99144 0.99662 0.95293 1.18660 1.00979 0.92826 0.85725 1.20495 0.93422 1.01204 1.38908 0.92453 1.25566 0.96035 0.99906 0.94945 1.70122 0.99493 1.35403 1.48726 0.85873 0.76897 0.81303 0.79242 1.19520 1.21338 1.19515 1.23100 0.93571 1.01651 1.03471 1.22463 0.93615 0.99638 1.03440 1.43177 1.41570 1.11940 1.18614 0.73241 0.92843 0.89577 0.93149 0.92419 0.89607 0.92037 0.93215 0.89473 0.93301 0.80071 0.92684 0.91645 0.93142 0.89165 0.89627 0.91535 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.46 71.98 0.61 -1.43 16 2 C 0.01 0.20 0.99 -52.93 -0.05 0.15 16 3 C -0.14 -1.97 7.39 71.98 0.53 -1.44 16 4 C -0.14 -2.24 8.46 71.98 0.61 -1.63 16 5 C 0.01 0.21 5.67 40.76 0.23 0.44 16 6 C -0.05 -1.49 10.82 83.43 0.90 -0.59 16 7 N -0.53 -21.57 10.60 -196.46 -2.08 -23.65 16 8 C 0.17 6.61 8.26 179.69 1.48 8.09 16 9 S 0.00 -0.08 21.16 -56.49 -1.20 -1.27 16 10 C -0.02 -0.93 5.31 71.98 0.38 -0.55 16 11 C 0.02 0.98 1.64 -52.93 -0.09 0.89 16 12 C -0.50 -26.63 7.54 25.60 0.19 -26.44 16 13 H 0.06 3.04 7.82 -2.91 -0.02 3.02 16 14 C 0.04 2.01 5.39 84.66 0.46 2.47 16 15 N -0.90 -51.45 12.93 21.45 0.28 -51.18 16 16 Si 0.94 42.97 29.55 68.60 2.03 44.99 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 C -0.18 -7.64 9.88 30.59 0.30 -7.34 16 21 C -0.15 -7.12 9.47 30.59 0.29 -6.83 16 22 N -0.55 -16.38 6.24 -182.32 -1.14 -17.52 16 23 H 0.43 10.42 8.96 -92.71 -0.83 9.59 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.90 7.95 -2.39 -0.02 0.88 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.91 7.95 -2.39 -0.02 0.89 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.18 4.90 7.30 -2.91 -0.02 4.88 16 34 H 0.05 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.06 2.95 7.95 -2.40 -0.02 2.94 16 36 H 0.26 14.31 8.32 -92.71 -0.77 13.54 16 37 H 0.09 3.39 8.08 -2.39 -0.02 3.37 16 38 H 0.09 3.50 8.14 -2.39 -0.02 3.49 16 39 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -63.79 344.95 3.92 -59.87 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.18 Total: 22.95 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 5.85 Total: -34.20 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -2.94 Total: -92.34 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -1.20 Total: -1.27 kcal Total: -63.79 3.92 -59.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601096768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.038 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds