Wall clock time and date at job start Tue Mar 31 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39201 * 119.99523 * 2 1 4 4 C 1.39136 * 119.93595 * 0.02562 * 3 2 1 5 5 C 1.37654 * 120.09052 * 179.74169 * 4 3 2 6 6 C 1.39765 * 119.97220 * 0.51412 * 5 4 3 7 7 C 1.47526 * 120.06183 * 179.74039 * 6 5 4 8 8 O 1.21601 * 119.99529 * 200.45023 * 7 6 5 9 9 N 1.34770 * 120.00465 * 20.45567 * 7 6 5 10 10 C 1.46501 * 119.99559 * 6.94076 * 9 7 6 11 11 C 1.46503 * 120.00314 * 186.94610 * 9 7 6 12 12 H 1.08994 * 109.46842 * 359.97438 * 11 9 7 13 13 C 1.53003 * 109.46906 * 239.99529 * 11 9 7 14 14 C 1.50694 * 109.47121 * 119.99585 * 11 9 7 15 15 H 1.08001 * 120.00468 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99559 * 179.97438 * 14 11 9 17 17 N 1.31525 * 119.99846 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00450 * 0.02562 * 16 14 11 19 19 H 1.48502 * 109.46745 * 269.99862 * 18 16 14 20 20 H 1.48499 * 109.46777 * 29.99559 * 18 16 14 21 21 H 1.48494 * 109.47237 * 149.99743 * 18 16 14 22 22 C 1.39810 * 119.87416 * 359.46068 * 6 5 4 23 23 C 1.37794 * 119.90168 * 0.28209 * 22 6 5 24 24 F 1.35097 * 119.98461 * 180.02562 * 23 22 6 25 25 H 1.08994 * 109.47780 * 299.99939 * 1 2 3 26 26 H 1.08995 * 109.46909 * 60.00799 * 1 2 3 27 27 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00477 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.95445 * 0.02562 * 4 3 2 30 30 H 1.08009 * 120.00849 * 180.25299 * 5 4 3 31 31 H 1.09000 * 109.47267 * 266.55614 * 10 9 7 32 32 H 1.08994 * 109.47427 * 26.56360 * 10 9 7 33 33 H 1.09007 * 109.46912 * 146.56563 * 10 9 7 34 34 H 1.08993 * 109.46945 * 179.97438 * 13 11 9 35 35 H 1.08995 * 109.47308 * 300.00162 * 13 11 9 36 36 H 1.09006 * 109.47023 * 59.99550 * 13 11 9 37 37 H 0.96999 * 119.99648 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.05050 * 180.25275 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1609 1.2056 0.0000 4 6 1.4637 2.4097 0.0005 5 6 2.1487 3.6037 0.0059 6 6 3.5463 3.6070 0.0000 7 6 4.2824 4.8855 -0.0001 8 8 5.4393 4.9209 -0.3729 9 7 3.6727 6.0141 0.4131 10 6 2.3338 5.9491 1.0041 11 6 4.3488 7.3061 0.2712 12 1 5.3273 7.1559 -0.1848 13 6 4.5221 7.9452 1.6505 14 6 3.5209 8.2130 -0.6022 15 1 2.5845 7.8624 -1.0104 16 6 3.9583 9.4909 -0.8793 17 7 3.2360 10.2823 -1.6420 18 14 5.5776 10.0976 -0.1726 19 1 5.3342 10.7341 1.1468 20 1 6.5054 8.9503 -0.0052 21 1 6.1802 11.0907 -1.0977 22 6 4.2455 2.3963 0.0000 23 6 3.5547 1.2040 0.0000 24 9 4.2286 0.0332 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9500 -0.8400 0.0004 29 1 0.3838 2.4075 0.0014 30 1 1.6062 4.5377 0.0105 31 1 1.5857 6.1099 0.2278 32 1 2.1833 4.9687 1.4561 33 1 2.2360 6.7204 1.7682 34 1 5.0255 8.9061 1.5450 35 1 3.5438 8.0952 2.1070 36 1 5.1209 7.2890 2.2823 37 1 3.5436 11.1814 -1.8366 38 1 5.3256 2.3955 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602092407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:44 Heat of formation + Delta-G solvation = -17.996387 kcal Electronic energy + Delta-G solvation = -21867.877971 eV Core-core repulsion = 18433.281553 eV Total energy + Delta-G solvation = -3434.596418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.80761 -40.07026 -38.44150 -35.70803 -35.53688 -32.88581 -31.09803 -30.42463 -29.37091 -26.60031 -26.41493 -25.12083 -22.97067 -22.59517 -20.97741 -19.05351 -17.92061 -17.50978 -16.68442 -16.44265 -15.75900 -15.70263 -15.18809 -14.84274 -14.69075 -14.42493 -14.35459 -14.12390 -13.35744 -13.15308 -12.89130 -12.72208 -12.42431 -12.25323 -12.23250 -12.09869 -11.75637 -11.44527 -11.16415 -10.96361 -10.54171 -10.23362 -10.11451 -9.64341 -9.35115 -9.10916 -8.84962 -8.63194 -7.78119 -7.53654 -6.14653 -4.15436 1.06773 1.24030 3.10600 3.18608 3.24503 3.38266 3.41526 3.74085 4.00452 4.23655 4.35948 4.72476 4.81254 4.92923 5.12045 5.12494 5.19816 5.29301 5.36511 5.52485 5.60616 5.87864 5.93316 6.04018 6.09333 6.18326 6.26884 6.34765 6.40271 6.49769 6.57872 6.85721 7.00107 7.14631 7.33001 7.35245 7.62393 8.17737 8.46635 8.83962 8.90781 9.46491 10.97942 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031470 B = 0.004206 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.526575 B = 6655.020461 C = 7138.081174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.747 5.747 3 C 0.203 3.797 4 C -0.186 4.186 5 C -0.064 4.064 6 C -0.155 4.155 7 C 0.554 3.446 8 O -0.552 6.552 9 N -0.582 5.582 10 C 0.074 3.926 11 C 0.230 3.770 12 H 0.064 0.936 13 C -0.162 4.162 14 C -0.528 4.528 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.895 5.895 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.262 1.262 21 H -0.294 1.294 22 C -0.049 4.049 23 C 0.004 3.996 24 F -0.145 7.145 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.404 0.596 29 H 0.135 0.865 30 H 0.161 0.839 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.266 0.734 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 -18.434 6.400 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.376 5.376 3 C 0.098 3.902 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.160 4.160 7 C 0.343 3.657 8 O -0.432 6.432 9 N -0.311 5.311 10 C -0.069 4.069 11 C 0.128 3.872 12 H 0.081 0.919 13 C -0.220 4.220 14 C -0.566 4.566 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.532 5.532 18 Si 0.712 3.288 19 H -0.204 1.204 20 H -0.187 1.187 21 H -0.222 1.222 22 C -0.069 4.069 23 C -0.019 4.019 24 F -0.124 7.124 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.238 0.762 29 H 0.152 0.848 30 H 0.178 0.822 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.655 -18.220 6.125 20.341 hybrid contribution 0.929 -0.038 0.295 0.976 sum -5.726 -18.258 6.420 20.183 Atomic orbital electron populations 1.21595 0.79515 1.02602 1.01575 1.44274 1.06111 1.05286 1.81880 1.17968 0.89312 0.87785 0.95171 1.20506 0.99955 0.89879 1.10555 1.22269 0.93544 0.99512 0.92933 1.19680 0.93562 0.93397 1.09400 1.18023 0.86168 0.83330 0.78194 1.90726 1.16992 1.86174 1.49331 1.47710 1.17090 1.07327 1.59012 1.22203 0.84759 1.01688 0.98268 1.19319 0.95300 0.79417 0.93139 0.91856 1.22454 1.00731 0.99691 0.99084 1.21153 1.08133 0.97190 1.30151 0.90291 1.24855 0.96808 0.96425 0.94588 1.69876 1.38190 1.08153 1.37018 0.86923 0.84733 0.78995 0.78113 1.20388 1.18713 1.22152 1.20978 1.01147 0.89451 0.95335 1.16905 0.87866 0.81759 1.15412 1.91426 1.80129 1.45727 1.95138 0.92517 0.92486 0.90721 0.76186 0.84756 0.82186 0.92055 0.91149 0.90996 0.93133 0.92499 0.94684 0.92434 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 9.93 59.85 0.59 1.14 16 2 N -0.75 -6.63 5.87 -65.34 -0.38 -7.01 16 3 C 0.20 2.39 6.66 -83.76 -0.56 1.83 16 4 C -0.19 -2.10 9.28 -39.46 -0.37 -2.47 16 5 C -0.06 -0.86 7.59 -39.22 -0.30 -1.15 16 6 C -0.16 -2.56 5.57 -104.95 -0.58 -3.14 16 7 C 0.55 11.53 7.51 -12.48 -0.09 11.44 16 8 O -0.55 -13.46 15.88 5.28 0.08 -13.38 16 9 N -0.58 -12.00 2.75 -176.50 -0.49 -12.48 16 10 C 0.07 1.16 7.91 59.85 0.47 1.64 16 11 C 0.23 5.55 2.22 -69.08 -0.15 5.40 16 12 H 0.06 1.71 5.98 -51.93 -0.31 1.40 16 13 C -0.16 -3.48 8.64 37.16 0.32 -3.16 16 14 C -0.53 -14.45 8.95 -34.44 -0.31 -14.76 16 15 H 0.08 2.30 7.79 -52.49 -0.41 1.89 16 16 C 0.08 2.15 5.45 -17.81 -0.10 2.06 16 17 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 18 Si 0.88 21.80 24.37 -169.99 -4.14 17.66 16 19 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 20 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 C -0.05 -0.76 9.55 -39.16 -0.37 -1.13 16 23 C 0.00 0.06 7.30 -39.32 -0.29 -0.23 16 24 F -0.15 -1.94 16.62 2.25 0.04 -1.90 16 25 H 0.06 0.31 7.93 -51.93 -0.41 -0.10 16 26 H 0.06 0.33 7.94 -51.93 -0.41 -0.08 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.40 3.22 8.29 -40.82 -0.34 2.88 16 29 H 0.13 1.16 6.70 -52.49 -0.35 0.80 16 30 H 0.16 2.01 4.02 -52.48 -0.21 1.80 16 31 H 0.06 0.94 6.87 -51.93 -0.36 0.58 16 32 H 0.07 0.90 5.27 -51.93 -0.27 0.63 16 33 H 0.07 1.11 6.44 -51.92 -0.33 0.78 16 34 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 35 H 0.06 1.12 6.68 -51.93 -0.35 0.77 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.14 2.26 7.78 -52.48 -0.41 1.85 16 LS Contribution 306.08 15.07 4.61 4.61 Total: -1.00 -33.09 306.08 -5.60 -38.69 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.36 Total: 2.32 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.73 Total: -2.55 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.10 Total: -45.46 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.09 -5.60 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602092407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.692 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds