Wall clock time and date at job start Tue Mar 31 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39201 * 119.99523 * 2 1 4 4 C 1.39136 * 119.93595 * 0.02562 * 3 2 1 5 5 C 1.37654 * 120.09052 * 179.74169 * 4 3 2 6 6 C 1.39765 * 119.97220 * 0.51412 * 5 4 3 7 7 C 1.47526 * 120.06183 * 179.74039 * 6 5 4 8 8 O 1.21601 * 119.99529 * 200.45023 * 7 6 5 9 9 N 1.34770 * 120.00465 * 20.45567 * 7 6 5 10 10 C 1.46501 * 119.99559 * 6.94076 * 9 7 6 11 11 C 1.46503 * 120.00314 * 186.94610 * 9 7 6 12 12 H 1.08994 * 109.46842 * 359.97438 * 11 9 7 13 13 C 1.53003 * 109.46906 * 239.99529 * 11 9 7 14 14 C 1.50694 * 109.47121 * 119.99585 * 11 9 7 15 15 H 1.08001 * 120.00468 * 0.02562 * 14 11 9 16 16 C 1.37878 * 119.99559 * 179.97438 * 14 11 9 17 17 N 1.31525 * 119.99846 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00450 * 0.02562 * 16 14 11 19 19 H 1.48502 * 109.46745 * 269.99862 * 18 16 14 20 20 H 1.48499 * 109.46777 * 29.99559 * 18 16 14 21 21 H 1.48494 * 109.47237 * 149.99743 * 18 16 14 22 22 C 1.39810 * 119.87416 * 359.46068 * 6 5 4 23 23 C 1.37794 * 119.90168 * 0.28209 * 22 6 5 24 24 F 1.35097 * 119.98461 * 180.02562 * 23 22 6 25 25 H 1.08994 * 109.47780 * 299.99939 * 1 2 3 26 26 H 1.08995 * 109.46909 * 60.00799 * 1 2 3 27 27 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00477 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.95445 * 0.02562 * 4 3 2 30 30 H 1.08009 * 120.00849 * 180.25299 * 5 4 3 31 31 H 1.09000 * 109.47267 * 266.55614 * 10 9 7 32 32 H 1.08994 * 109.47427 * 26.56360 * 10 9 7 33 33 H 1.09007 * 109.46912 * 146.56563 * 10 9 7 34 34 H 1.08993 * 109.46945 * 179.97438 * 13 11 9 35 35 H 1.08995 * 109.47308 * 300.00162 * 13 11 9 36 36 H 1.09006 * 109.47023 * 59.99550 * 13 11 9 37 37 H 0.96999 * 119.99648 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.05050 * 180.25275 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1609 1.2056 0.0000 4 6 1.4637 2.4097 0.0005 5 6 2.1487 3.6037 0.0059 6 6 3.5463 3.6070 0.0000 7 6 4.2824 4.8855 -0.0001 8 8 5.4393 4.9209 -0.3729 9 7 3.6727 6.0141 0.4131 10 6 2.3338 5.9491 1.0041 11 6 4.3488 7.3061 0.2712 12 1 5.3273 7.1559 -0.1848 13 6 4.5221 7.9452 1.6505 14 6 3.5209 8.2130 -0.6022 15 1 2.5845 7.8624 -1.0104 16 6 3.9583 9.4909 -0.8793 17 7 3.2360 10.2823 -1.6420 18 14 5.5776 10.0976 -0.1726 19 1 5.3342 10.7341 1.1468 20 1 6.5054 8.9503 -0.0052 21 1 6.1802 11.0907 -1.0977 22 6 4.2455 2.3963 0.0000 23 6 3.5547 1.2040 0.0000 24 9 4.2286 0.0332 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9500 -0.8400 0.0004 29 1 0.3838 2.4075 0.0014 30 1 1.6062 4.5377 0.0105 31 1 1.5857 6.1099 0.2278 32 1 2.1833 4.9687 1.4561 33 1 2.2360 6.7204 1.7682 34 1 5.0255 8.9061 1.5450 35 1 3.5438 8.0952 2.1070 36 1 5.1209 7.2890 2.2823 37 1 3.5436 11.1814 -1.8366 38 1 5.3256 2.3955 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602092407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:24:44 Heat of formation + Delta-G solvation = -41.457264 kcal Electronic energy + Delta-G solvation = -21868.895311 eV Core-core repulsion = 18433.281553 eV Total energy + Delta-G solvation = -3435.613758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.85440 -41.41380 -39.66030 -37.33594 -36.59294 -34.79360 -32.74742 -31.55493 -30.52225 -27.99021 -27.26899 -27.10182 -24.26240 -23.64882 -22.39535 -20.56535 -19.07463 -18.85575 -18.43540 -17.57106 -17.35064 -16.82629 -16.58856 -16.36600 -16.03835 -15.56854 -15.09276 -14.99974 -14.94640 -14.79305 -14.24009 -14.12918 -14.09222 -13.54821 -13.53390 -13.28849 -12.95626 -12.83242 -12.76907 -12.54486 -12.04383 -11.85656 -11.58020 -11.32211 -11.20085 -10.78249 -10.73806 -9.90217 -9.41962 -8.47656 -8.33565 -6.37666 -0.06392 0.19464 1.27112 1.37294 1.45911 1.86172 2.22586 2.29269 2.37042 2.74740 3.01758 3.20272 3.63750 3.73959 4.07727 4.21938 4.34101 4.41443 4.45559 4.57916 4.59457 4.59841 4.72403 4.73934 4.84752 4.92162 4.97763 5.02603 5.07624 5.14558 5.31051 5.38329 5.50126 5.58867 5.73399 6.15691 6.22783 6.58362 6.63474 6.71595 7.21464 7.35733 8.82046 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031470 B = 0.004206 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.526575 B = 6655.020461 C = 7138.081174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.737 5.737 3 C 0.219 3.781 4 C -0.176 4.176 5 C -0.055 4.055 6 C -0.183 4.183 7 C 0.546 3.454 8 O -0.604 6.604 9 N -0.589 5.589 10 C 0.069 3.931 11 C 0.231 3.769 12 H 0.029 0.971 13 C -0.155 4.155 14 C -0.525 4.525 15 H 0.051 0.949 16 C 0.026 3.974 17 N -0.937 5.937 18 Si 0.937 3.063 19 H -0.252 1.252 20 H -0.266 1.266 21 H -0.296 1.296 22 C -0.057 4.057 23 C -0.008 4.008 24 F -0.146 7.146 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.409 0.591 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.268 0.732 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 -20.264 7.946 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C 0.110 3.890 4 C -0.198 4.198 5 C -0.074 4.074 6 C -0.188 4.188 7 C 0.337 3.663 8 O -0.488 6.488 9 N -0.317 5.317 10 C -0.072 4.072 11 C 0.128 3.872 12 H 0.047 0.953 13 C -0.212 4.212 14 C -0.563 4.563 15 H 0.070 0.930 16 C -0.173 4.173 17 N -0.576 5.576 18 Si 0.764 3.236 19 H -0.177 1.177 20 H -0.191 1.191 21 H -0.223 1.223 22 C -0.078 4.078 23 C -0.031 4.031 24 F -0.125 7.125 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.244 0.756 29 H 0.189 0.811 30 H 0.187 0.813 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.763 -20.100 7.702 23.241 hybrid contribution 1.419 0.310 -0.246 1.473 sum -7.344 -19.791 7.456 22.387 Atomic orbital electron populations 1.21907 0.77205 1.04687 1.02363 1.44559 1.07611 1.04479 1.79690 1.18091 0.88596 0.89237 0.93084 1.20798 1.01507 0.88532 1.09004 1.22321 0.92003 1.00933 0.92118 1.19313 0.94692 0.91234 1.13584 1.18734 0.85860 0.84689 0.76975 1.90677 1.19394 1.87099 1.51612 1.47744 1.18695 1.06066 1.59234 1.22501 0.82280 1.03992 0.98452 1.18999 0.93388 0.80815 0.94019 0.95345 1.22317 1.02132 0.99260 0.97514 1.21344 1.07257 0.97591 1.30120 0.93048 1.25577 0.99874 0.96789 0.95038 1.69990 1.40096 1.08744 1.38798 0.86039 0.80754 0.78282 0.78483 1.17749 1.19061 1.22344 1.20866 1.00582 0.90203 0.96107 1.16895 0.88788 0.81076 1.16369 1.91420 1.80376 1.45477 1.95215 0.91365 0.91842 0.88273 0.75585 0.81112 0.81305 0.91585 0.87653 0.90470 0.93911 0.90615 0.92826 0.92253 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 9.93 127.77 1.27 1.83 16 2 N -0.74 -10.17 5.87 -360.63 -2.12 -12.29 16 3 C 0.22 4.45 6.66 38.46 0.26 4.71 16 4 C -0.18 -3.30 9.28 22.35 0.21 -3.09 16 5 C -0.06 -1.36 7.59 22.50 0.17 -1.18 16 6 C -0.18 -6.02 5.57 -20.08 -0.11 -6.13 16 7 C 0.55 23.39 7.51 86.69 0.65 24.04 16 8 O -0.60 -31.08 15.88 -4.03 -0.06 -31.14 16 9 N -0.59 -24.44 2.75 -830.57 -2.29 -26.72 16 10 C 0.07 2.08 7.91 127.77 1.01 3.09 16 11 C 0.23 11.31 2.22 44.24 0.10 11.41 16 12 H 0.03 1.60 5.98 -2.39 -0.01 1.58 16 13 C -0.15 -6.46 8.64 71.98 0.62 -5.84 16 14 C -0.52 -29.33 8.95 25.60 0.23 -29.10 16 15 H 0.05 3.08 7.79 -2.91 -0.02 3.06 16 16 C 0.03 1.50 5.45 84.65 0.46 1.97 16 17 N -0.94 -57.06 13.96 21.45 0.30 -56.76 16 18 Si 0.94 45.32 24.37 68.60 1.67 47.00 16 19 H -0.25 -11.13 6.87 99.48 0.68 -10.45 16 20 H -0.27 -12.90 6.53 99.48 0.65 -12.25 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 22 C -0.06 -1.79 9.55 22.54 0.22 -1.57 16 23 C -0.01 -0.20 7.30 22.44 0.16 -0.03 16 24 F -0.15 -3.74 16.62 44.97 0.75 -3.00 16 25 H 0.07 0.39 7.93 -2.39 -0.02 0.37 16 26 H 0.06 0.43 7.94 -2.39 -0.02 0.41 16 27 H 0.10 0.26 8.14 -2.38 -0.02 0.25 16 28 H 0.41 5.08 8.29 -92.71 -0.77 4.31 16 29 H 0.17 1.99 6.70 -2.91 -0.02 1.97 16 30 H 0.17 3.83 4.02 -2.91 -0.01 3.81 16 31 H 0.07 1.93 6.87 -2.39 -0.02 1.92 16 32 H 0.11 2.43 5.27 -2.39 -0.01 2.41 16 33 H 0.08 2.23 6.44 -2.38 -0.02 2.22 16 34 H 0.04 1.84 3.27 -2.39 -0.01 1.84 16 35 H 0.07 2.84 6.68 -2.39 -0.02 2.83 16 36 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.13 4.27 7.78 -2.91 -0.02 4.25 16 Total: -1.00 -75.06 306.08 3.76 -71.30 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.26 Total: 11.53 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.24 Total: 0.09 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -4.10 Total: -95.77 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.06 Total: -31.14 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.75 Total: -3.00 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.67 Total: 47.00 kcal Total: -75.06 3.76 -71.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602092407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.840 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds