Wall clock time and date at job start Tue Mar 31 2020 01:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47489 * 2 1 4 4 C 1.52995 * 109.47481 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46952 * 60.00051 * 3 2 1 6 6 C 1.46901 * 110.99918 * 60.00101 * 5 3 2 7 7 C 1.52991 * 109.47420 * 173.95967 * 6 5 3 8 8 C 1.50707 * 115.54853 * 39.72091 * 7 6 5 9 9 H 1.08001 * 119.99950 * 264.72077 * 8 7 6 10 10 C 1.37878 * 120.00036 * 84.72043 * 8 7 6 11 11 N 1.31508 * 120.00123 * 353.11589 * 10 8 7 12 12 Si 1.86796 * 119.99835 * 173.10758 * 10 8 7 13 13 H 1.48509 * 109.47132 * 60.00631 * 12 10 8 14 14 H 1.48498 * 109.47034 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47483 * 300.00642 * 12 10 8 16 16 C 1.52998 * 117.50247 * 254.01512 * 7 6 5 17 17 C 1.52998 * 117.50113 * 185.38929 * 7 6 5 18 18 C 1.50696 * 109.47008 * 300.00607 * 3 2 1 19 19 N 1.29032 * 124.92093 * 64.69001 * 18 3 2 20 20 C 1.31781 * 117.12695 * 179.81351 * 19 18 3 21 21 C 1.33639 * 114.49826 * 0.47555 * 20 19 18 22 22 S 1.70980 * 124.91476 * 244.99696 * 18 3 2 23 23 H 1.09002 * 109.47652 * 59.99582 * 1 2 3 24 24 H 1.09000 * 109.47365 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46936 * 300.00027 * 1 2 3 26 26 H 1.09000 * 109.46883 * 240.00457 * 2 1 3 27 27 H 1.09002 * 109.47652 * 120.00418 * 2 1 3 28 28 H 1.09007 * 109.46633 * 300.00107 * 4 3 2 29 29 H 1.08991 * 109.47272 * 60.00000 * 4 3 2 30 30 H 1.09000 * 109.47267 * 180.02562 * 4 3 2 31 31 H 1.00907 * 111.00129 * 296.05515 * 5 3 2 32 32 H 1.09002 * 109.46815 * 53.95736 * 6 5 3 33 33 H 1.09005 * 109.47298 * 293.96350 * 6 5 3 34 34 H 0.96999 * 120.00551 * 185.02432 * 11 10 8 35 35 H 1.09004 * 117.49756 * 359.97438 * 16 7 6 36 36 H 1.09004 * 117.50153 * 145.02040 * 16 7 6 37 37 H 1.09009 * 117.50099 * 214.97861 * 17 7 6 38 38 H 1.09000 * 117.50206 * 359.97438 * 17 7 6 39 39 H 1.08001 * 122.74996 * 180.22852 * 20 19 18 40 40 H 1.08006 * 126.03713 * 179.72002 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 1.5504 2.1350 1.1995 6 6 2.0214 1.4688 2.4211 7 6 1.6202 2.2991 3.6419 8 6 0.2477 2.9188 3.5839 9 1 0.1286 3.9363 3.2419 10 6 -0.8560 2.1868 3.9674 11 7 -0.7307 0.9094 4.2541 12 14 -2.5292 3.0095 4.0801 13 1 -2.9040 3.5533 2.7500 14 1 -3.5425 2.0134 4.5115 15 1 -2.4712 4.1160 5.0688 16 6 2.7220 3.0868 4.3536 17 6 2.1297 1.8374 5.0087 18 6 1.5376 2.1529 -1.2304 19 7 0.2972 2.4004 -1.4857 20 6 0.0302 3.0363 -2.6086 21 6 1.1043 3.3334 -3.3461 22 16 2.5281 2.7412 -2.4938 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9336 0.9285 0.8892 29 1 3.9329 0.9288 -0.8908 30 1 3.9333 2.4701 -0.0002 31 1 0.5438 2.2050 1.1910 32 1 3.1067 1.3732 2.3874 33 1 1.5715 0.4784 2.4914 34 1 -1.5170 0.3775 4.4529 35 1 3.7328 3.0132 3.9523 36 1 2.4542 4.0536 4.7800 37 1 1.4723 1.9822 5.8661 38 1 2.7504 0.9418 5.0383 39 1 -0.9747 3.2925 -2.9101 40 1 1.1002 3.8456 -4.2970 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602793791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:33 Heat of formation + Delta-G solvation = 73.248582 kcal Electronic energy + Delta-G solvation = -20734.534879 eV Core-core repulsion = 17870.108315 eV Total energy + Delta-G solvation = -2864.426563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80109 -37.76417 -35.96007 -31.86328 -30.98382 -30.24637 -29.21551 -25.74329 -25.37476 -24.11079 -22.96745 -20.97579 -20.56019 -19.15722 -18.83592 -17.36649 -15.97498 -15.63545 -15.03086 -14.64611 -14.50675 -14.32103 -13.88975 -13.40743 -13.31619 -12.75237 -12.59780 -12.34903 -12.02053 -11.82130 -11.40382 -11.35276 -11.05438 -10.88865 -10.86505 -10.74423 -10.60777 -10.47021 -10.32137 -10.04901 -9.40616 -9.21425 -9.10991 -8.73833 -8.71601 -8.37966 -8.01269 -7.32500 -5.95913 -3.99681 0.93278 1.56353 1.96786 3.09198 3.36327 3.40308 3.44519 4.32741 4.47002 4.94801 5.08138 5.26240 5.31293 5.33236 5.40321 5.50764 5.65175 5.71239 5.89495 5.95633 6.00401 6.21619 6.23226 6.30684 6.37279 6.43571 6.48052 6.63417 6.72182 6.83689 6.86086 6.95810 7.05540 7.18978 7.48710 7.56313 7.96035 7.99798 8.11781 8.46574 8.60005 9.02347 9.64399 11.11821 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.006480 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.306186 B = 4319.842004 C = 4999.448141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.140 4.140 3 C 0.183 3.817 4 C -0.149 4.149 5 N -0.654 5.654 6 C 0.104 3.896 7 C 0.054 3.946 8 C -0.484 4.484 9 H 0.059 0.941 10 C 0.072 3.928 11 N -0.880 5.880 12 Si 0.883 3.117 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.278 1.278 16 C -0.208 4.208 17 C -0.163 4.163 18 C 0.094 3.906 19 N -0.465 5.465 20 C 0.043 3.957 21 C -0.281 4.281 22 S 0.109 5.891 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.366 0.634 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.170 0.830 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 -0.269 -13.130 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.180 4.180 3 C 0.087 3.913 4 C -0.207 4.207 5 N -0.290 5.290 6 C -0.025 4.025 7 C 0.054 3.946 8 C -0.522 4.522 9 H 0.078 0.922 10 C -0.131 4.131 11 N -0.517 5.517 12 Si 0.711 3.289 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.204 1.204 16 C -0.246 4.246 17 C -0.201 4.201 18 C -0.185 4.185 19 N -0.179 5.179 20 C -0.108 4.108 21 C -0.420 4.420 22 S 0.364 5.636 23 H 0.090 0.910 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.190 0.810 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.187 0.813 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.302 -0.095 -12.843 14.773 hybrid contribution -2.507 -0.118 -0.214 2.519 sum 4.795 -0.213 -13.057 13.911 Atomic orbital electron populations 1.21913 0.94615 1.00914 1.04252 1.22142 0.97921 0.96126 1.01849 1.19509 0.94350 0.90506 0.86936 1.22005 0.93432 1.03074 1.02214 1.60678 1.19387 1.50448 0.98454 1.21500 0.96059 0.95891 0.89086 1.18743 0.92294 0.95671 0.87935 1.20349 0.89317 0.99085 1.43421 0.92245 1.24944 0.98511 0.94894 0.94756 1.69971 1.29218 1.05625 1.46926 0.86797 0.84165 0.79283 0.78649 1.20112 1.21513 1.20408 1.22991 0.97355 0.95796 1.08419 1.22524 1.02791 0.95004 0.99808 1.27213 0.90892 1.00368 1.00049 1.66261 1.18578 1.14927 1.18088 1.21842 1.00314 0.98410 0.90208 1.27006 0.95473 1.12440 1.07057 1.83817 1.12598 1.52470 1.14728 0.91043 0.93864 0.91126 0.92838 0.90634 0.90596 0.92565 0.91258 0.80998 0.93989 0.94637 0.93165 0.91918 0.90846 0.90331 0.92232 0.81260 0.81183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.14 37.15 0.34 -2.52 16 2 C -0.14 -2.28 4.60 -26.73 -0.12 -2.40 16 3 C 0.18 3.05 0.69 -132.76 -0.09 2.96 16 4 C -0.15 -2.11 7.33 37.15 0.27 -1.84 16 5 N -0.65 -13.35 5.71 -101.14 -0.58 -13.92 16 6 C 0.10 2.23 4.98 -3.83 -0.02 2.21 16 7 C 0.05 1.31 1.75 -155.66 -0.27 1.04 16 8 C -0.48 -12.91 7.49 -34.44 -0.26 -13.17 16 9 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 10 C 0.07 1.93 5.39 -17.82 -0.10 1.83 16 11 N -0.88 -24.28 12.96 55.43 0.72 -23.56 16 12 Si 0.88 21.27 29.55 -169.99 -5.02 16.25 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 C -0.21 -4.61 9.88 -26.73 -0.26 -4.87 16 17 C -0.16 -3.82 9.50 -26.73 -0.25 -4.08 16 18 C 0.09 1.51 5.84 -13.46 -0.08 1.43 16 19 N -0.46 -7.89 7.91 -11.86 -0.09 -7.99 16 20 C 0.04 0.61 11.35 -19.19 -0.22 0.39 16 21 C -0.28 -3.37 11.37 29.12 0.33 -3.03 16 22 S 0.11 1.40 21.58 -107.50 -2.32 -0.92 16 23 H 0.07 1.27 5.65 -51.93 -0.29 0.98 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.28 6.54 -51.93 -0.34 0.94 16 28 H 0.08 1.07 6.28 -51.93 -0.33 0.75 16 29 H 0.06 0.67 7.81 -51.93 -0.41 0.26 16 30 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 31 H 0.37 8.45 5.96 -39.29 -0.23 8.22 16 32 H 0.04 0.83 5.80 -51.93 -0.30 0.52 16 33 H 0.04 0.83 6.64 -51.93 -0.35 0.48 16 34 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 35 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 36 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.08 1.98 8.14 -51.92 -0.42 1.55 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.17 1.94 8.06 -52.49 -0.42 1.51 16 40 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -27.93 328.86 -9.01 -36.94 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.94 Total: 10.31 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -0.73 Total: -22.07 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.05 Total: -45.47 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.32 Total: -0.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.93 -9.01 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602793791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.191 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds