Wall clock time and date at job start Tue Mar 31 2020 02:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46940 * 2 1 4 4 C 1.53001 * 109.47004 * 120.00321 * 2 1 3 5 5 N 1.46901 * 109.47123 * 294.87212 * 4 2 1 6 6 C 1.46900 * 110.99365 * 288.34830 * 5 4 2 7 7 C 1.46898 * 111.00030 * 164.39699 * 5 4 2 8 8 C 1.52999 * 109.47058 * 197.31682 * 7 5 4 9 9 C 1.50697 * 115.55180 * 295.23314 * 8 7 5 10 10 H 1.07994 * 120.00246 * 143.50226 * 9 8 7 11 11 C 1.37884 * 119.99862 * 323.50249 * 9 8 7 12 12 N 1.31511 * 119.99798 * 345.11469 * 11 9 8 13 13 Si 1.86796 * 119.99784 * 165.11314 * 11 9 8 14 14 H 1.48505 * 109.46754 * 90.00525 * 13 11 9 15 15 H 1.48501 * 109.46942 * 209.99687 * 13 11 9 16 16 H 1.48496 * 109.47478 * 330.00192 * 13 11 9 17 17 C 1.52998 * 117.49915 * 149.55879 * 8 7 5 18 18 C 1.52998 * 117.49697 * 80.90202 * 8 7 5 19 19 C 1.50699 * 109.47036 * 240.00083 * 2 1 3 20 20 N 1.29026 * 124.92024 * 120.00077 * 19 2 1 21 21 C 1.31779 * 117.12920 * 180.02562 * 20 19 2 22 22 C 1.33641 * 114.50160 * 359.97438 * 21 20 19 23 23 S 1.70984 * 124.91718 * 300.32181 * 19 2 1 24 24 H 1.08998 * 109.47324 * 175.70800 * 1 2 3 25 25 H 1.09000 * 109.47288 * 295.71431 * 1 2 3 26 26 H 1.09000 * 109.47304 * 55.71057 * 1 2 3 27 27 H 1.09001 * 109.46851 * 54.86839 * 4 2 1 28 28 H 1.09001 * 109.47102 * 174.86455 * 4 2 1 29 29 H 1.08998 * 109.47406 * 48.61470 * 6 5 4 30 30 H 1.09000 * 109.46909 * 168.61177 * 6 5 4 31 31 H 1.08998 * 109.47359 * 288.60598 * 6 5 4 32 32 H 1.09002 * 109.46887 * 317.31893 * 7 5 4 33 33 H 1.08997 * 109.47274 * 77.31821 * 7 5 4 34 34 H 0.97000 * 119.99965 * 185.05232 * 12 11 9 35 35 H 1.09004 * 117.50344 * 0.02562 * 17 8 7 36 36 H 1.09000 * 117.49682 * 145.02055 * 17 8 7 37 37 H 1.09000 * 117.49715 * 214.97916 * 18 8 7 38 38 H 1.09001 * 117.50117 * 359.97438 * 18 8 7 39 39 H 1.07999 * 122.75003 * 180.02562 * 21 20 19 40 40 H 1.07997 * 126.03685 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6540 0.0389 2.4455 6 6 2.4364 1.2771 2.5574 7 6 1.7898 -0.7810 3.6568 8 6 0.9952 -0.1415 4.7972 9 6 1.4866 1.2075 5.2552 10 1 0.7796 1.9646 5.5605 11 6 2.8389 1.4751 5.2844 12 7 3.7061 0.4899 5.2008 13 14 3.4391 3.2369 5.4428 14 1 3.5925 3.5802 6.8795 15 1 4.7492 3.3769 4.7578 16 1 2.4528 4.1540 4.8172 17 6 0.4031 -1.0744 5.8555 18 6 -0.5133 -0.3942 4.8355 19 6 2.0323 -0.7104 -1.2305 20 7 2.7772 -0.1769 -2.1389 21 6 3.1278 -0.9411 -3.1537 22 6 2.6525 -2.1889 -3.0979 23 16 1.6912 -2.3378 -1.6288 24 1 -0.3634 -1.0248 -0.0769 25 1 -0.3634 0.4459 0.9259 26 1 -0.3634 0.5790 -0.8491 27 1 1.6035 -1.7190 1.2963 28 1 3.1261 -0.8017 1.2044 29 1 2.4257 1.8013 1.6018 30 1 1.9999 1.9145 3.3263 31 1 3.4642 1.0344 2.8272 32 1 1.4052 -1.7823 3.4628 33 1 2.8412 -0.8436 3.9371 34 1 4.6547 0.6695 5.2948 35 1 0.5801 -2.1437 5.7397 36 1 0.3688 -0.7122 6.8831 37 1 -1.1502 0.4152 5.1924 38 1 -0.9397 -1.0156 4.0481 39 1 3.7490 -0.5882 -3.9636 40 1 2.8237 -2.9672 -3.8268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602804142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:54 Heat of formation + Delta-G solvation = 68.452321 kcal Electronic energy + Delta-G solvation = -20277.441929 eV Core-core repulsion = 17412.807385 eV Total energy + Delta-G solvation = -2864.634545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = -0.17 seconds Orbital eigenvalues (eV) -40.71731 -39.45642 -37.38626 -34.72714 -33.98173 -30.52623 -28.23974 -28.04785 -27.21706 -26.23477 -23.73568 -22.78831 -21.45942 -21.06868 -20.74103 -18.68370 -17.95143 -16.87621 -16.75843 -16.11921 -15.99128 -15.79665 -15.34352 -15.11649 -14.84824 -14.21945 -14.10278 -13.91500 -13.43161 -13.29946 -13.15038 -12.82359 -12.61654 -12.42956 -12.30526 -12.21378 -12.11540 -11.98145 -11.90643 -11.65072 -11.08676 -10.84747 -10.59774 -10.42891 -10.34486 -9.91298 -9.79730 -8.90548 -7.99271 -6.02250 -0.23603 0.44266 0.84865 1.37733 1.44431 1.51209 1.88480 2.41450 2.90600 3.08831 3.51083 3.83472 3.91527 4.10063 4.20136 4.35785 4.39845 4.46048 4.56406 4.61381 4.69414 4.75311 4.80997 4.94127 4.96557 5.03790 5.09188 5.09450 5.17236 5.26017 5.27550 5.43755 5.47344 5.60574 5.62438 5.67934 6.02139 6.47472 6.52447 6.57446 6.81526 6.92208 7.49036 8.94459 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.004971 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.283921 B = 5631.280500 C = 6309.459753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.008 4.008 3 H 0.083 0.917 4 C 0.069 3.931 5 N -0.515 5.515 6 C 0.027 3.973 7 C 0.094 3.906 8 C 0.035 3.965 9 C -0.495 4.495 10 H 0.047 0.953 11 C 0.053 3.947 12 N -0.895 5.895 13 Si 0.918 3.082 14 H -0.281 1.281 15 H -0.284 1.284 16 H -0.263 1.263 17 C -0.206 4.206 18 C -0.178 4.178 19 C 0.044 3.956 20 N -0.511 5.511 21 C 0.017 3.983 22 C -0.256 4.256 23 S 0.145 5.855 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.010 0.990 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.005 0.995 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.259 0.741 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.196 0.804 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -6.172 -15.188 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.031 4.031 3 H 0.101 0.899 4 C -0.061 4.061 5 N -0.238 5.238 6 C -0.121 4.121 7 C -0.033 4.033 8 C 0.035 3.965 9 C -0.533 4.533 10 H 0.066 0.934 11 C -0.148 4.148 12 N -0.533 5.533 13 Si 0.744 3.256 14 H -0.207 1.207 15 H -0.209 1.209 16 H -0.188 1.188 17 C -0.245 4.245 18 C -0.215 4.215 19 C -0.233 4.233 20 N -0.226 5.226 21 C -0.133 4.133 22 C -0.395 4.395 23 S 0.398 5.602 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.213 0.787 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.917 -6.311 -14.794 16.554 hybrid contribution 2.131 1.068 -0.143 2.388 sum -1.786 -5.243 -14.936 15.930 Atomic orbital electron populations 1.21717 0.91297 1.02485 1.03006 1.19733 0.97785 0.98710 0.86822 0.89906 1.22100 0.96614 0.97139 0.90215 1.61832 1.54761 1.05616 1.01613 1.22716 0.95191 0.93515 1.00687 1.21644 1.01190 0.92417 0.88054 1.18937 0.90159 0.94060 0.93384 1.20602 0.91418 0.97518 1.43721 0.93440 1.25310 0.96731 0.98861 0.93919 1.69957 1.02059 1.31615 1.49694 0.86210 0.78185 0.83115 0.78099 1.20703 1.20909 1.18754 1.22933 1.08826 0.97320 0.95409 1.22736 0.94926 1.02458 1.01405 1.27158 0.99650 0.96504 1.00036 1.66307 1.14069 1.38754 1.03510 1.22208 1.02710 0.90342 0.98012 1.27517 1.05897 1.02844 1.03215 1.83881 1.47257 1.11755 1.17297 0.91833 0.90566 0.92203 0.90376 0.97131 0.93477 0.89323 0.97603 0.94035 0.92058 0.93147 0.90753 0.91688 0.91158 0.89541 0.78711 0.77332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.07 71.98 0.65 -2.74 16 2 C -0.01 -0.25 2.83 -11.54 -0.03 -0.28 16 3 H 0.08 2.80 6.41 -2.39 -0.02 2.79 16 4 C 0.07 2.39 4.23 86.30 0.36 2.75 16 5 N -0.52 -21.01 4.05 -922.46 -3.74 -24.75 16 6 C 0.03 1.18 7.67 127.69 0.98 2.16 16 7 C 0.09 4.27 4.70 86.30 0.41 4.67 16 8 C 0.04 1.68 1.96 -52.93 -0.10 1.58 16 9 C -0.50 -25.84 7.02 25.60 0.18 -25.66 16 10 H 0.05 2.53 7.86 -2.91 -0.02 2.51 16 11 C 0.05 2.71 2.95 84.66 0.25 2.96 16 12 N -0.90 -48.03 9.92 21.45 0.21 -47.82 16 13 Si 0.92 41.57 28.51 68.60 1.96 43.53 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 17 C -0.21 -9.11 9.93 30.62 0.30 -8.80 16 18 C -0.18 -7.42 9.96 30.62 0.30 -7.11 16 19 C 0.04 1.25 6.03 88.52 0.53 1.78 16 20 N -0.51 -15.09 10.54 -191.44 -2.02 -17.11 16 21 C 0.02 0.38 11.35 83.66 0.95 1.33 16 22 C -0.26 -4.65 11.37 66.78 0.76 -3.89 16 23 S 0.14 3.15 22.57 -56.49 -1.27 1.88 16 24 H 0.06 1.51 7.77 -2.39 -0.02 1.49 16 25 H 0.08 2.28 7.64 -2.39 -0.02 2.26 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 2.48 7.69 -2.39 -0.02 2.46 16 28 H 0.01 0.40 8.06 -2.39 -0.02 0.38 16 29 H 0.05 1.86 6.28 -2.39 -0.02 1.84 16 30 H 0.09 4.27 3.88 -2.39 -0.01 4.26 16 31 H 0.01 0.26 6.76 -2.39 -0.02 0.25 16 32 H 0.04 1.73 7.66 -2.39 -0.02 1.71 16 33 H 0.06 3.17 5.35 -2.39 -0.01 3.16 16 34 H 0.26 13.51 8.32 -92.71 -0.77 12.74 16 35 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -57.53 326.47 1.70 -55.82 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.02 Total: 19.70 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 5.55 Total: -31.25 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -5.55 Total: -89.68 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.96 Total: 43.53 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.27 Total: 1.88 kcal Total: -57.53 1.70 -55.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602804142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.275 kcal (2) G-P(sol) polarization free energy of solvation -57.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.17 seconds