Wall clock time and date at job start Tue Mar 31 2020 01:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47004 * 2 1 4 4 H 1.08997 * 109.47229 * 54.98859 * 3 2 1 5 5 N 1.46903 * 109.47037 * 294.98489 * 3 2 1 6 6 C 1.46910 * 110.99437 * 105.14892 * 5 3 2 7 7 C 1.52995 * 109.46977 * 86.72548 * 6 5 3 8 8 C 1.50698 * 115.55207 * 39.81741 * 7 6 5 9 9 H 1.08005 * 120.00410 * 264.75451 * 8 7 6 10 10 C 1.37883 * 119.99959 * 84.75250 * 8 7 6 11 11 N 1.31512 * 119.99792 * 2.03840 * 10 8 7 12 12 Si 1.86800 * 120.00006 * 182.03260 * 10 8 7 13 13 H 1.48503 * 109.47139 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46997 * 120.00043 * 12 10 8 15 15 H 1.48498 * 109.47337 * 240.00365 * 12 10 8 16 16 C 1.53002 * 117.49645 * 254.11085 * 7 6 5 17 17 C 1.52999 * 60.00016 * 252.50786 * 16 7 6 18 18 C 1.50702 * 109.47022 * 174.98950 * 3 2 1 19 19 N 1.29024 * 124.91492 * 254.72703 * 18 3 2 20 20 C 1.31784 * 117.12551 * 179.97438 * 19 18 3 21 21 C 1.50694 * 122.74992 * 180.02562 * 20 19 18 22 22 C 1.33637 * 114.49870 * 0.02562 * 20 19 18 23 23 S 1.70977 * 124.91447 * 74.42515 * 18 3 2 24 24 H 1.09005 * 109.47051 * 180.61811 * 1 2 3 25 25 H 1.09006 * 109.46968 * 300.61296 * 1 2 3 26 26 H 1.08996 * 109.47314 * 60.61763 * 1 2 3 27 27 H 1.08998 * 109.47121 * 120.00296 * 2 1 3 28 28 H 1.09001 * 109.47039 * 240.00225 * 2 1 3 29 29 H 1.00892 * 111.00017 * 341.19942 * 5 3 2 30 30 H 1.09000 * 109.46490 * 206.72049 * 6 5 3 31 31 H 1.08995 * 109.46988 * 326.72474 * 6 5 3 32 32 H 0.97005 * 119.99793 * 185.01543 * 11 10 8 33 33 H 1.08994 * 117.50037 * 0.02562 * 16 7 6 34 34 H 1.08999 * 117.49712 * 145.02457 * 16 7 6 35 35 H 1.09000 * 117.50627 * 252.51010 * 17 16 7 36 36 H 1.09000 * 117.51786 * 107.47690 * 17 16 7 37 37 H 1.08999 * 109.47598 * 90.00353 * 21 20 19 38 38 H 1.09004 * 109.47425 * 210.00249 * 21 20 19 39 39 H 1.09001 * 109.47460 * 329.99779 * 21 20 19 40 40 H 1.08005 * 126.03946 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8417 5 7 1.6517 2.0991 -1.2554 6 6 0.5413 3.0362 -1.0377 7 6 1.0983 4.3989 -0.6211 8 6 2.3450 4.8400 -1.3436 9 1 3.3157 4.6578 -0.9065 10 6 2.2465 5.4763 -2.5629 11 7 1.0636 5.7341 -3.0764 12 14 3.7934 5.9724 -3.4852 13 1 4.9881 5.5718 -2.6994 14 1 3.8206 5.2950 -4.8064 15 1 3.8012 7.4441 -3.6832 16 6 0.9520 4.8027 0.8474 17 6 0.0930 5.4809 -0.2217 18 6 3.5419 1.4443 0.1241 19 7 4.1942 1.7535 1.1935 20 6 5.5095 1.7025 1.1309 21 6 6.3950 2.0368 2.3035 22 6 5.9937 1.3301 -0.0577 23 16 4.6279 1.0299 -1.1297 24 1 -0.3633 -1.0277 0.0111 25 1 -0.3633 0.5234 0.8845 26 1 -0.3634 0.5042 -0.8954 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.4169 1.4183 -1.9620 30 1 -0.0294 3.1436 -1.9601 31 1 -0.1083 2.6532 -0.2508 32 1 0.9935 6.1153 -3.9656 33 1 0.4594 4.0975 1.5167 34 1 1.7577 5.3876 1.2912 35 1 0.3334 6.5118 -0.4814 36 1 -0.9653 5.2220 -0.2563 37 1 6.5847 1.1343 2.8846 38 1 7.3403 2.4411 1.9414 39 1 5.9007 2.7769 2.9328 40 1 7.0377 1.2264 -0.3144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602804791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:03 Heat of formation + Delta-G solvation = 46.971178 kcal Electronic energy + Delta-G solvation = -20475.418558 eV Core-core repulsion = 17609.852521 eV Total energy + Delta-G solvation = -2865.566037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.74461 -39.17119 -37.26951 -33.83195 -32.89524 -32.50592 -28.97148 -28.24398 -27.43236 -25.37359 -23.95472 -22.90611 -21.85594 -20.91089 -20.35915 -18.49192 -17.82046 -16.79494 -16.56407 -16.34291 -16.04640 -15.53612 -15.39390 -14.85780 -14.55503 -14.32254 -13.95354 -13.60637 -13.50690 -13.29510 -13.15920 -12.99968 -12.84414 -12.65241 -12.50022 -12.37668 -12.10048 -12.07579 -11.88581 -11.79681 -11.34043 -10.82623 -10.47516 -10.27263 -10.17280 -9.81548 -9.43456 -9.06338 -7.96490 -5.98791 -0.06003 0.66638 1.05260 1.37805 1.41593 1.51065 1.95547 2.50632 3.01191 3.34066 3.54443 3.70397 3.98888 4.03349 4.18052 4.34347 4.41717 4.43816 4.50517 4.61170 4.65222 4.76832 4.79386 4.83680 4.85277 4.91665 5.00524 5.04142 5.07439 5.12415 5.20716 5.31339 5.36143 5.45837 5.68141 5.70753 5.91589 6.28775 6.63338 6.77171 6.98460 7.00517 7.63657 9.12601 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.013019 B = 0.007995 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.219077 B = 3501.425648 C = 4443.435630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.167 3.833 4 H 0.079 0.921 5 N -0.665 5.665 6 C 0.124 3.876 7 C 0.032 3.968 8 C -0.441 4.441 9 H 0.026 0.974 10 C 0.030 3.970 11 N -0.912 5.912 12 Si 0.927 3.073 13 H -0.281 1.281 14 H -0.278 1.278 15 H -0.289 1.289 16 C -0.198 4.198 17 C -0.160 4.160 18 C 0.079 3.921 19 N -0.511 5.511 20 C 0.044 3.956 21 C -0.072 4.072 22 C -0.288 4.288 23 S 0.142 5.858 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.343 0.657 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.254 0.746 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 -13.686 5.641 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.097 0.903 5 N -0.296 5.296 6 C -0.005 4.005 7 C 0.031 3.969 8 C -0.480 4.480 9 H 0.044 0.956 10 C -0.168 4.168 11 N -0.553 5.553 12 Si 0.755 3.245 13 H -0.206 1.206 14 H -0.204 1.204 15 H -0.216 1.216 16 C -0.235 4.235 17 C -0.198 4.198 18 C -0.199 4.199 19 N -0.228 5.228 20 C -0.088 4.088 21 C -0.131 4.131 22 C -0.427 4.427 23 S 0.398 5.602 24 H 0.097 0.903 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.162 0.838 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.201 -13.230 4.945 14.736 hybrid contribution 0.645 0.572 0.114 0.870 sum 4.847 -12.658 5.060 14.468 Atomic orbital electron populations 1.21784 0.93832 1.02968 1.01949 1.22106 0.97511 0.94097 1.03417 1.20012 0.85327 0.95434 0.93940 0.90309 1.59766 1.42446 1.20113 1.07313 1.21281 0.89421 0.91285 0.98494 1.19090 0.95283 0.91913 0.90571 1.20150 0.90576 1.33685 1.03568 0.95612 1.25306 0.97160 0.95909 0.98437 1.70068 1.23001 1.46077 1.16116 0.85987 0.81894 0.77342 0.79238 1.20608 1.20420 1.21596 1.22953 1.02378 1.04640 0.93566 1.22385 0.95272 0.98091 1.04041 1.27332 1.01763 0.99452 0.91392 1.66102 1.08123 1.18892 1.29638 1.20763 0.89425 1.01294 0.97307 1.20383 0.96939 1.02586 0.93183 1.27101 1.04762 1.14224 0.96595 1.83688 0.97191 1.61429 1.17879 0.90299 0.92872 0.92800 0.90878 0.90283 0.83756 0.93008 0.94763 0.93705 0.89782 0.92404 0.92817 0.90632 0.89220 0.89195 0.91827 0.78581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.92 71.98 0.64 -2.50 16 2 C -0.13 -3.19 5.21 30.59 0.16 -3.03 16 3 C 0.17 5.50 2.54 44.17 0.11 5.61 16 4 H 0.08 2.92 7.41 -2.39 -0.02 2.90 16 5 N -0.67 -24.44 5.17 -495.44 -2.56 -27.00 16 6 C 0.12 5.06 5.06 86.30 0.44 5.50 16 7 C 0.03 1.57 1.73 -52.93 -0.09 1.48 16 8 C -0.44 -24.37 8.16 25.60 0.21 -24.16 16 9 H 0.03 1.53 7.81 -2.91 -0.02 1.51 16 10 C 0.03 1.66 5.43 84.66 0.46 2.12 16 11 N -0.91 -52.10 12.72 21.45 0.27 -51.82 16 12 Si 0.93 45.42 29.54 68.60 2.03 47.44 16 13 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 16 C -0.20 -8.88 9.86 30.59 0.30 -8.58 16 17 C -0.16 -7.62 9.25 30.59 0.28 -7.33 16 18 C 0.08 2.82 6.31 88.52 0.56 3.38 16 19 N -0.51 -19.06 10.53 -179.41 -1.89 -20.95 16 20 C 0.04 1.42 6.74 41.52 0.28 1.70 16 21 C -0.07 -1.69 10.31 71.23 0.73 -0.96 16 22 C -0.29 -8.39 11.13 66.78 0.74 -7.65 16 23 S 0.14 4.52 22.98 -56.49 -1.30 3.22 16 24 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.05 1.21 6.74 -2.39 -0.02 1.19 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 1.74 8.05 -2.39 -0.02 1.72 16 29 H 0.34 10.99 7.86 -89.70 -0.71 10.28 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.03 1.24 6.48 -2.39 -0.02 1.22 16 32 H 0.25 14.00 8.32 -92.70 -0.77 13.23 16 33 H 0.08 3.31 8.08 -2.39 -0.02 3.30 16 34 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.05 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.20 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -64.45 343.13 1.69 -62.75 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.32 Total: 20.79 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 4.83 Total: -34.44 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -4.18 Total: -99.77 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.30 Total: 3.22 kcal Total: -64.45 1.69 -62.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602804791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.724 kcal (2) G-P(sol) polarization free energy of solvation -64.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds