Wall clock time and date at job start Tue Mar 31 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47216 * 2 1 4 4 C 1.50702 * 109.47105 * 120.00108 * 2 1 3 5 5 H 1.07998 * 120.00257 * 119.99625 * 4 2 1 6 6 C 1.37884 * 119.99964 * 300.00234 * 4 2 1 7 7 N 1.31502 * 120.00159 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99656 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47336 * 90.00428 * 8 6 4 10 10 H 1.48506 * 109.46980 * 209.99831 * 8 6 4 11 11 H 1.48501 * 109.47478 * 329.99965 * 8 6 4 12 12 N 1.46904 * 109.47423 * 239.99914 * 2 1 3 13 13 C 1.46902 * 110.99620 * 85.00311 * 12 2 1 14 14 H 1.08999 * 109.46994 * 324.99816 * 13 12 2 15 15 C 1.52995 * 109.47461 * 85.00142 * 13 12 2 16 16 C 1.50703 * 109.46780 * 205.00319 * 13 12 2 17 17 O 1.21283 * 119.99961 * 359.97438 * 16 13 12 18 18 N 1.34779 * 119.99786 * 180.02562 * 16 13 12 19 19 C 1.39917 * 119.99700 * 174.89885 * 18 16 13 20 20 C 1.38913 * 120.05773 * 146.32862 * 19 18 16 21 21 C 1.38100 * 119.97891 * 179.72554 * 20 19 18 22 22 C 1.38268 * 120.09659 * 0.57122 * 21 20 19 23 23 C 1.38486 * 120.11337 * 359.70067 * 22 21 20 24 24 F 1.35100 * 119.99340 * 180.02562 * 23 22 21 25 25 C 1.38355 * 120.02081 * 0.02562 * 23 22 21 26 26 H 1.08993 * 109.47124 * 300.00010 * 1 2 3 27 27 H 1.09005 * 109.46358 * 60.00210 * 1 2 3 28 28 H 1.09000 * 109.46738 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00394 * 179.97438 * 7 6 4 30 30 H 1.00889 * 110.99768 * 321.04946 * 12 2 1 31 31 H 1.09005 * 109.47039 * 59.99184 * 15 13 12 32 32 H 1.09000 * 109.47506 * 179.97438 * 15 13 12 33 33 H 1.09004 * 109.47271 * 299.99863 * 15 13 12 34 34 H 0.96996 * 119.99690 * 354.61645 * 18 16 13 35 35 H 1.07999 * 120.00465 * 359.97438 * 20 19 18 36 36 H 1.08000 * 119.95412 * 180.29210 * 21 20 19 37 37 H 1.07998 * 119.94779 * 179.72902 * 22 21 20 38 38 H 1.08001 * 120.04484 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 2.1371 -0.8596 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8022 0.8744 2.6993 10 1 0.9770 1.9953 3.9071 11 1 0.8491 2.1773 1.4923 12 7 2.0198 -0.6925 -1.1994 13 6 2.0826 0.2227 -2.3468 14 1 1.2578 0.9329 -2.2906 15 6 3.4112 0.9809 -2.3223 16 6 1.9788 -0.5676 -3.6259 17 8 1.8642 -1.7743 -3.5855 18 7 2.0142 0.0667 -4.8146 19 6 2.0255 -0.6732 -6.0021 20 6 1.3905 -0.1802 -7.1350 21 6 1.4074 -0.9091 -8.3078 22 6 2.0456 -2.1349 -8.3532 23 6 2.6751 -2.6327 -7.2245 24 9 3.2983 -3.8304 -7.2717 25 6 2.6659 -1.9038 -6.0486 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9031 -0.5280 4.4376 30 1 1.4497 -1.4978 -1.4100 31 1 4.2361 0.2706 -2.3784 32 1 3.4581 1.6597 -3.1739 33 1 3.4863 1.5525 -1.3972 34 1 2.0278 1.0360 -4.8468 35 1 0.8872 0.7747 -7.0996 36 1 0.9176 -0.5233 -9.1897 37 1 2.0536 -2.7050 -9.2704 38 1 3.1570 -2.2915 -5.1683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:25:46 Heat of formation + Delta-G solvation = -42.762224 kcal Electronic energy + Delta-G solvation = -21444.395941 eV Core-core repulsion = 18008.725596 eV Total energy + Delta-G solvation = -3435.670345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.00708 -40.74166 -38.68027 -36.36810 -34.90183 -33.01189 -31.26949 -30.80655 -29.61782 -27.65129 -25.22067 -24.46634 -23.14859 -22.32720 -20.47015 -19.79984 -18.51575 -17.42810 -16.71351 -16.47442 -16.25307 -15.86158 -15.67777 -15.32073 -14.90544 -14.64071 -14.05247 -13.81633 -13.47751 -13.07142 -12.92021 -12.66467 -12.42451 -12.19679 -12.14751 -12.00018 -11.77490 -11.69916 -11.37662 -10.97228 -10.59675 -10.56276 -10.13869 -9.76850 -9.53347 -9.17634 -9.01567 -8.59510 -8.43808 -7.57586 -6.05592 -4.03413 0.86427 0.98980 2.51033 2.79365 3.23119 3.30414 3.35671 3.41263 4.07579 4.37650 4.48723 4.69931 4.76659 4.81220 4.83592 5.11999 5.22863 5.24423 5.32101 5.42084 5.72070 5.79722 5.85649 5.99917 6.01792 6.06210 6.11894 6.19093 6.23497 6.44383 6.46676 6.63569 6.72788 7.04607 7.15271 7.64689 7.81410 8.00439 8.25485 8.66098 9.07383 9.55898 11.07965 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034739 B = 0.003545 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.807462 B = 7895.886644 C = 8263.003680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.183 3.817 3 H 0.037 0.963 4 C -0.498 4.498 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.654 5.654 13 C 0.067 3.933 14 H 0.065 0.935 15 C -0.135 4.135 16 C 0.514 3.486 17 O -0.503 6.503 18 N -0.677 5.677 19 C 0.185 3.815 20 C -0.162 4.162 21 C -0.072 4.072 22 C -0.177 4.177 23 C 0.120 3.880 24 F -0.137 7.137 25 C -0.160 4.160 26 H 0.047 0.953 27 H 0.024 0.976 28 H 0.056 0.944 29 H 0.264 0.736 30 H 0.347 0.653 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.414 0.586 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 5.546 -23.821 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.075 3.925 3 H 0.054 0.946 4 C -0.536 4.536 5 H 0.101 0.899 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.288 5.288 13 C -0.046 4.046 14 H 0.083 0.917 15 C -0.193 4.193 16 C 0.302 3.698 17 O -0.375 6.375 18 N -0.323 5.323 19 C 0.090 3.910 20 C -0.183 4.183 21 C -0.090 4.090 22 C -0.196 4.196 23 C 0.100 3.900 24 F -0.115 7.115 25 C -0.181 4.181 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.879 4.699 -23.314 23.799 hybrid contribution -1.587 1.189 0.051 1.984 sum -2.466 5.888 -23.262 24.122 Atomic orbital electron populations 1.22901 1.01516 1.01178 0.98802 1.19741 0.88505 0.95176 0.89110 0.94564 1.20933 1.31310 1.13862 0.87511 0.89860 1.24935 0.95971 0.96618 0.95844 1.69874 1.45792 1.40259 0.97846 0.86904 0.80658 0.83911 0.76877 1.20774 1.22380 1.19528 1.60704 1.59105 1.08063 1.00931 1.21536 0.99499 0.95132 0.88479 0.91739 1.21768 0.95957 0.99467 1.02088 1.21368 0.74446 0.88896 0.85046 1.90721 1.45678 1.14391 1.86685 1.43699 1.74146 1.10497 1.04007 1.17469 0.95042 0.92266 0.86251 1.20969 1.02186 1.02338 0.92766 1.20753 0.97406 0.93280 0.97588 1.21101 1.02283 0.98194 0.98054 1.17487 0.95880 0.82116 0.94486 1.91515 1.80225 1.42765 1.97018 1.21167 1.02642 0.95879 0.98442 0.93432 0.95714 0.92493 0.92637 0.83187 0.91371 0.93123 0.90605 0.74954 0.85026 0.84682 0.84773 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.92 8.63 37.16 0.32 -3.60 16 2 C 0.18 4.19 1.98 -68.86 -0.14 4.06 16 3 H 0.04 0.83 6.17 -51.93 -0.32 0.51 16 4 C -0.50 -13.94 9.42 -34.44 -0.32 -14.27 16 5 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 8 Si 0.89 21.47 24.37 -169.99 -4.14 17.33 16 9 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 12 N -0.65 -13.31 5.92 -102.16 -0.60 -13.92 16 13 C 0.07 1.04 2.83 -68.86 -0.20 0.85 16 14 H 0.07 0.92 7.11 -51.93 -0.37 0.55 16 15 C -0.13 -1.83 9.30 37.16 0.35 -1.48 16 16 C 0.51 7.60 6.92 -10.98 -0.08 7.52 16 17 O -0.50 -9.25 13.33 5.55 0.07 -9.17 16 18 N -0.68 -7.33 5.19 -9.87 -0.05 -7.39 16 19 C 0.19 2.10 6.28 -83.71 -0.53 1.57 16 20 C -0.16 -1.38 9.96 -39.38 -0.39 -1.78 16 21 C -0.07 -0.56 10.04 -39.62 -0.40 -0.95 16 22 C -0.18 -1.64 10.02 -39.48 -0.40 -2.04 16 23 C 0.12 1.46 7.30 -39.45 -0.29 1.17 16 24 F -0.14 -1.80 17.27 2.25 0.04 -1.77 16 25 C -0.16 -2.13 8.63 -39.33 -0.34 -2.47 16 26 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 27 H 0.02 0.44 7.43 -51.93 -0.39 0.05 16 28 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.35 7.31 7.19 -39.30 -0.28 7.03 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.49 7.69 -51.93 -0.40 0.09 16 33 H 0.07 1.13 7.43 -51.93 -0.39 0.75 16 34 H 0.41 3.03 8.41 -40.82 -0.34 2.69 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 2.31 6.41 -52.49 -0.34 1.97 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -32.58 315.22 -6.37 -38.95 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.71 Total: 7.51 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.50 Total: -9.58 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.12 Total: -48.02 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.58 -6.37 -38.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.812 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds