Wall clock time and date at job start Tue Mar 31 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 5 5 H 1.07998 * 120.00472 * 120.00016 * 4 2 1 6 6 C 1.37879 * 119.99705 * 299.99679 * 4 2 1 7 7 N 1.31516 * 120.00261 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00001 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47348 * 89.99570 * 8 6 4 10 10 H 1.48496 * 109.47246 * 210.00199 * 8 6 4 11 11 H 1.48509 * 109.46943 * 329.99773 * 8 6 4 12 12 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 13 13 C 1.46899 * 111.00029 * 85.00270 * 12 2 1 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 2 15 15 C 1.33635 * 122.74922 * 94.70680 * 14 13 12 16 16 S 1.76201 * 107.92202 * 179.97438 * 15 14 13 17 17 C 1.70970 * 90.28565 * 0.27532 * 16 15 14 18 18 C 1.50697 * 124.92190 * 179.83845 * 17 16 15 19 19 C 1.54269 * 110.02887 * 57.16379 * 18 17 16 20 20 C 1.54886 * 104.19712 * 217.10682 * 19 18 17 21 21 C 1.54891 * 102.74905 * 37.94724 * 20 19 18 22 22 C 1.53878 * 110.03230 * 300.00428 * 18 17 16 23 23 N 1.29032 * 110.16578 * 359.84243 * 17 16 15 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 0.96997 * 119.99862 * 180.02562 * 7 6 4 28 28 H 1.00902 * 111.00190 * 321.03970 * 12 2 1 29 29 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 30 30 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 31 31 H 1.07998 * 126.03845 * 0.04058 * 15 14 13 32 32 H 1.08993 * 110.01868 * 178.60767 * 18 17 16 33 33 H 1.09000 * 110.48916 * 335.78872 * 19 18 17 34 34 H 1.09003 * 110.48229 * 98.43227 * 19 18 17 35 35 H 1.09002 * 110.75968 * 279.62992 * 20 19 18 36 36 H 1.09004 * 110.91603 * 156.33315 * 20 19 18 37 37 H 1.09000 * 110.48704 * 203.38155 * 21 20 19 38 38 H 1.08993 * 110.60333 * 80.78752 * 21 20 19 39 39 H 1.08998 * 110.02899 * 238.56950 * 22 18 17 40 40 H 1.09003 * 110.03040 * 359.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6248 1.2788 2.6542 9 1 -0.8028 0.8725 2.6997 10 1 0.9759 1.9948 3.9069 11 1 0.8471 2.1764 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5214 -3.5558 15 6 1.7725 -1.0721 -4.4596 16 16 2.7691 -1.8347 -5.6964 17 6 4.1838 -1.3442 -4.8711 18 6 5.5914 -1.6363 -5.3231 19 6 5.8155 -1.0816 -6.7451 20 6 6.7215 -2.1371 -7.4261 21 6 6.1659 -3.4728 -6.8727 22 6 5.8142 -3.1567 -5.4043 23 7 3.8718 -0.6878 -3.8049 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.9033 -0.5282 4.4375 28 1 1.4495 -1.4979 -1.4101 29 1 1.0870 0.6165 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 0.6929 -1.0522 -4.4365 32 1 6.3056 -1.1906 -4.6308 33 1 4.8667 -0.9946 -7.2746 34 1 6.3198 -0.1162 -6.7028 35 1 7.7622 -2.0003 -7.1323 36 1 6.6194 -2.0961 -8.5106 37 1 6.9259 -4.2524 -6.9235 38 1 5.2741 -3.7742 -7.4221 39 1 6.6371 -3.4487 -4.7520 40 1 4.9043 -3.6832 -5.1163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:41 Heat of formation + Delta-G solvation = 35.839019 kcal Electronic energy + Delta-G solvation = -19243.243948 eV Core-core repulsion = 16377.195184 eV Total energy + Delta-G solvation = -2866.048764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94981 -38.19579 -36.15364 -32.72554 -31.46382 -29.58900 -28.97749 -28.20980 -25.57208 -24.95859 -23.21341 -21.00124 -20.26443 -20.22475 -19.56794 -17.62918 -16.58567 -16.19669 -15.55946 -15.08999 -14.88067 -14.40379 -14.27270 -13.69715 -13.44161 -13.22495 -12.93654 -12.78359 -12.37768 -12.04187 -11.86763 -11.69407 -11.57145 -11.38282 -11.35577 -11.07492 -10.99104 -10.89740 -10.78973 -10.42862 -10.11266 -9.53573 -9.44687 -9.27647 -9.15012 -8.61419 -8.52946 -7.42033 -6.01471 -3.98731 0.80365 1.44166 1.82812 2.94795 3.26794 3.36863 3.39939 3.97981 4.32107 4.37399 4.42541 4.67019 5.06651 5.16074 5.16641 5.25098 5.27476 5.29729 5.30725 5.39204 5.43747 5.56155 5.62471 5.66258 5.80672 5.86234 5.94267 6.01850 6.06343 6.12453 6.17294 6.29429 6.35316 6.49401 6.73046 7.10845 7.71534 7.89511 7.97729 8.30688 8.72086 9.10679 9.60706 11.12205 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032065 B = 0.003486 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.022039 B = 8029.417750 C = 8452.107089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.184 3.816 3 H 0.036 0.964 4 C -0.497 4.497 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.662 5.662 13 C 0.128 3.872 14 C 0.091 3.909 15 C -0.263 4.263 16 S 0.093 5.907 17 C 0.061 3.939 18 C -0.018 4.018 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.120 4.120 23 N -0.449 5.449 24 H 0.046 0.954 25 H 0.026 0.974 26 H 0.054 0.946 27 H 0.263 0.737 28 H 0.331 0.669 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.173 0.827 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -2.093 -24.307 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.075 3.925 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.292 5.292 13 C -0.004 4.004 14 C -0.041 4.041 15 C -0.402 4.402 16 S 0.348 5.652 17 C -0.218 4.218 18 C -0.040 4.040 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.159 4.159 23 N -0.163 5.163 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.191 0.809 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.882 -2.351 -24.497 25.089 hybrid contribution -2.126 1.353 0.926 2.685 sum 2.756 -0.998 -23.571 23.752 Atomic orbital electron populations 1.22877 1.01486 1.00941 0.98927 1.19668 0.88504 0.95219 0.89105 0.94652 1.20972 1.31115 1.13765 0.87665 0.90032 1.24941 0.96037 0.96614 0.95844 1.69885 1.45927 1.40386 0.97812 0.86891 0.80513 0.83982 0.76924 1.20807 1.22402 1.19447 1.60578 1.58144 1.08442 1.02052 1.20505 0.98171 0.94912 0.86854 1.20380 0.86795 0.99387 0.97506 1.26835 1.04684 1.08763 0.99939 1.83666 0.99683 1.54269 1.27589 1.27107 1.00107 1.00098 0.94522 1.20490 0.88937 0.96872 0.97710 1.22546 1.00421 0.99122 0.93605 1.22497 0.99331 0.94434 0.99838 1.22389 1.00906 0.97548 0.95427 1.22309 1.02611 0.93593 0.97362 1.66112 1.18794 1.15532 1.15814 0.93524 0.95496 0.92675 0.92705 0.85224 0.94521 0.89746 0.80921 0.87828 0.91187 0.90771 0.91091 0.91261 0.91283 0.91481 0.90561 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 8.64 37.16 0.32 -3.63 16 2 C 0.18 4.42 2.17 -68.86 -0.15 4.27 16 3 H 0.04 0.88 6.86 -51.93 -0.36 0.53 16 4 C -0.50 -14.37 9.42 -34.44 -0.32 -14.69 16 5 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 6 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 7 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 8 Si 0.89 22.18 24.37 -169.99 -4.14 18.04 16 9 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 12 N -0.66 -14.12 6.22 -109.22 -0.68 -14.80 16 13 C 0.13 2.30 5.92 -4.98 -0.03 2.27 16 14 C 0.09 1.51 6.25 -84.22 -0.53 0.98 16 15 C -0.26 -3.59 11.12 29.12 0.32 -3.26 16 16 S 0.09 1.09 22.03 -107.50 -2.37 -1.28 16 17 C 0.06 0.83 5.86 -13.46 -0.08 0.75 16 18 C -0.02 -0.19 3.40 -90.65 -0.31 -0.50 16 19 C -0.12 -1.00 6.33 -25.07 -0.16 -1.16 16 20 C -0.12 -0.83 6.91 -24.74 -0.17 -1.00 16 21 C -0.13 -0.90 6.83 -25.07 -0.17 -1.07 16 22 C -0.12 -1.12 6.37 -25.61 -0.16 -1.28 16 23 N -0.45 -7.67 10.53 -8.06 -0.08 -7.76 16 24 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 25 H 0.03 0.49 7.45 -51.92 -0.39 0.10 16 26 H 0.05 1.15 8.13 -51.93 -0.42 0.73 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.33 6.66 8.46 -39.29 -0.33 6.33 16 29 H 0.04 0.59 7.39 -51.93 -0.38 0.21 16 30 H 0.08 1.60 8.06 -51.93 -0.42 1.18 16 31 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 0.60 7.18 -51.93 -0.37 0.23 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.72 7.43 -51.93 -0.39 0.34 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -32.06 327.93 -9.31 -41.37 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.21 Total: 3.30 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.53 Total: -16.48 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.01 Total: -49.89 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.37 Total: -1.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.06 -9.31 -41.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.209 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds